Herpesviruses including novel gammaherpesviruses are widespread among phocid seal species in Canada.

Little is known about herpesviruses in Canadian pinnipeds. We measured prevalence of antibodies to herpesviruses in the sera from Canadian phocid seals by an indirect enzyme-linked immunosorbent assay. Wild harbor seals (Phoca vitulina) and captive harbor seals were positive for antibodies to Phocid herpesvirus 1 (PhoHV-1) at prevalences of 91% and 100%, respectively. Sera from wild hooded seals (Cystophora cristata), harp seals (Pagophilus groenlandica), and grey seals (Halichoerus grypus) were positive for antibodies to PhoHV-1 antigenically related herpesvirus antigens at 73%, 79%, and 96%, respectively. We isolated new herpesviruses in cell culture from two hunter-harvested ringed seals (Pusa hispida) in poor body condition from Ulukhaktok, Northwest Territories, Canada; one lethargic hooded seal from the St. Lawrence Estuary, Québec, Canada; and one captive, asymptomatic harp seal from the Magdalen Islands, Québec. Partial sequencing of the herpesvirus DNA polymerase gene revealed that all four virus isolates were closely related to PhoHV-2, a member of the Gammaherpesvirinae subfamily, with nucleotide similarity ranging between 92.8% and 95.3%. The new seal herpesviruses were genetically related to other known pinniped herpesviruses, such as PhoHV-1, Otariid herpesvirus 3, Hawaiian monk (Monachus schauinslandi) seal herpesvirus, and Phocid herpesvirus 5 with 47–48%, 55%, 77%, and 70–77% nucleotide similarities, respectively. The harp seal herpesvirus and both ringed seal herpesviruses were almost identical to each other, whereas the hooded seal herpesvirus was genetically different from the three others (92.8% nucleotide similarity), indicating detection of at least two novel seal herpesviruses. These findings are the first isolation, partial genome sequencing, and identification of seal gammaherpesviruses in three species of Canadian phocid seals; two species of which were suspected of exposure to one or more antigenically related herpesviruses based on serologic analyses.

Data collection of Calanus finmarchicus reproduction life history traits in the North Atlantic Ocean

Observations of egg production rates (EPR) for female Calanus finmarchicus were compared from different regions of the North Atlantic. The regions were diverse in size and sampling frequency, ranging from a fixed time series station in the Lower St Lawrence Estuary, off Rimouski, where nearly 200 experiments were carried out between May and December from 1994 to 2006, to a large-scale survey in the Northern Norwegian Sea, where about 50 experiments were carried out between April and June from 2002 to 2004. For this analysis the stations were grouped mostly along geographic lines, with only limited attention being paid to oceanographic features. There is some overlap between regions, however, where stations were sometimes kept together when they were sampled on the same cruise. As well some stations other than off Rimouski were occupied more than once during different years and/or in different seasons.

The Welland Canals Foundation, Honourable William Hamilton Merritt and the St. Catharines Historical Society and Museum, 1971-1990, n.d.

‘The Father of Canadian Transportation’ is a term commonly associated with William Hamilton Merritt. Although he is most known for being one of the driving forces behind the building of the first Welland Canal, he was many things throughout his life; a soldier, merchant, promoter, entrepreneur and politician to name a few. Born on July 3, 1793 at Bedford, Westchester County, N.Y. to Thomas Merritt and Mary Hamilton, Merritt’s family relocated to Canada shortly after in 1796. The move came after Merritt’s father petitioned John Graves Simcoe for land in Upper Canada after serving under him in the Queen’s Rangers during the American Revolution. The family quickly settled into their life at Twelve Mile Creek in St. Catharines. Merritt’s father became sheriff of Lincoln County in 1803 while Merritt began his education in mathematics and surveying. After some brief travel and further education Merritt returned to Lincoln County, in 1809 to help farm his father’s land and open a general store. While a farmer and merchant, Merritt turned his attention to military endeavours. A short time after being commissioned as a Lieutenant in the Lincoln militia, the War of 1812 broke out. Fulfilling his duty, Merritt fought in the Battle of Queenston Heights in October of 1812, and numerous small battles until the Battle of Lundy’s Lane in July 1814. It was here that Merritt was captured and held in Cheshire, Massachusetts until the war ended. Arriving back in the St. Catharines area upon his release, Merritt returned to being a merchant, as well as becoming a surveyor and mill owner. Some historians hypothesize that the need to draw water to his mill was how the idea of the Welland Canals was born. Beginning with a plan to connect the Welland River with the Twelve mile creek quickly developed into a connection between the Lakes Erie and Ontario. Its main purpose was to improve the St. Lawrence transportation system and provide a convenient way to transport goods without having to go through the Niagara Falls portage. The plan was set in motion in 1818, but most living in Queenston and Niagara were not happy with it as it would drive business away from them. Along with the opposition came financial and political restraints. Despite these factors Merritt pushed on and the Welland Canal Company was chartered by the Upper Canadian Assembly on January 19, 1824. The first sod was turned on November 30, 1824 almost a year after the initial chartering. Many difficulties arose during the building of the canal including financial, physical, and geographic restrictions. Despite the difficulties two schooners passed through the canal on November 30, 1829. Throughout the next four years continual work was done on the canal as it expended and was modified to better accommodate large ships. After his canal was underway Merritt took a more active role in the political arena, where he served in various positions throughout Upper Canada. In 1851, Merritt withdrew from the Executive Council for numerous reasons, one of which being that pubic interest had diverted from the canals to railways. Merritt tried his hand at other public works outside transportation and trade. He looked into building a lunatic asylum, worked on behalf of War of 1812 veterans, aided in building Brock’s monument, established schools, aided refugee slaves from the U.S. and tried to establish a National Archives among many other feats. He was described by some as having “policy too liberal – conceptions too vast – views too comprehensive to be comprehensible by all”, but he still made a great difference in the society in which he lived. After his great contributions, Merritt died aboard a ship in the Cornwall canal on July 5, 1862. Dictionary of Canadian Biography Online http://www.biographi.ca/EN/ShowBio.asp?BioId=38719 retrieved October 2006 Today numerous groups carry on the legacy of Merritt and the canals both in the past and present. One such group is the Welland Canals Foundation. They describe themselves as: “. . . a volunteer organization which strives to promote the importance of the present and past Welland Canals, and to preserve their history and heritage. The Foundation began in 1980 and carries on events like William Hamilton Merritt Day. The group has strongly supported the Welland Canals Parkway initiative and numerous other activities”. The Welland Canals Foundation does not work alone. They have help from other local groups such as the St. Catharines Historical Society. The Society’s main objective is to increase knowledge and appreciation of the historical aspects of St. Catharines and vicinity, such as the Welland Canals. http://www.niagara.com/~dmdorey/hssc/dec2000.html - retrieved Oct. 2006 http://www.niagara.com/~dmdorey/hssc/feb2000.html - retrieved Oct. 2006

L’occupation amérindienne tardive du site Rioux (DaEi-19), île Verte : iroquoienne ou algonquienne?

Ce projet de recherche a comme objectif général de déterminer l’identité culturelle des occupants amérindiens qui se sont établis sur le site Rioux (DaEi-19), île Verte, au cours du Sylvicole supérieur tardif. Plusieurs groupes culturels sont reconnus pour avoir transité dans la région de l’estuaire du Saint-Laurent pendant cette période, dont les Iroquoiens du Saint-Laurent, les Malécites, les Mi’kmaq et les Innus (Montagnais). Il est depuis longtemps accepté que les Stadaconiens se rendaient régulièrement dans l’estuaire et le golfe pour y exploiter les ressources marines et y faire la guerre. L’influence de ce groupe sur les Algonquiens de la région, et vice versa, fait encore l’objet de débats. L’identité culturelle des Amérindiens qui ont occupé les sites à caractère iroquoïde dans l’estuaire est toujours une question délicate, puisque les nombreux échanges ont pu, de part et d’autre, transformer la culture matérielle des différents groupes. La méthodologie préconisée pour répondre à la question de l’identité culturelle est une approche holistique dans laquelle nous avons mis à contribution une foule d’informations provenant de diverses sources archéologiques et ethnohistoriques. Ce projet nous a permis de proposer que de petits groupes iroquoiens du Saint-Laurent se soient arrêtés au site Rioux pour y exploiter intensivement les ressources de la mer au cours du Sylvicole supérieur tardif. Bien que la recherche n’ait pas permis d’établir la présence d’un groupe algonquien sur place, l’influence algonquienne se fait toutefois sentir dans les matières premières utilisées sur le site. Ceci laisse croire que les Iroquoiens du site Rioux, et de la Côte-Sud en général, n’étaient pas intrusifs à la région et qu’ils participaient à un important réseau d’échange avec les Algonquiens des provinces maritimes. Notre projet de recherche nous a aussi permis de constater les limites de notre méthodologie et de critiquer l’approche archéologique classique basée essentiellement sur l’identification stylistique, la typologie et l’identification macroscopique.

L’exploitation du phoque dans le secteur de l’embouchure du Saguenay (Québec, Canada) par les Iroquoiens au Sylvicole supérieur(1000-1534 de notre ère)

Au cours du Sylvicole supérieur (1000-1500 AD), le secteur de l’embouchure du Saguenay aurait été exploité par des groupes Iroquoiens du Saint-Laurent en quête de ressources marines, et plus particulièrement du phoque. Ces groupes provenaient vraisemblablement de la région de Québec où se trouvaient leurs camps de base et auraient ainsi développé une forme d’adaptation aux ressources marines de l’estuaire, faisant d’eux les groupes iroquoiens les plus mobiles de toute la vallée du Saint-Laurent. Dans cette étude, nous proposons que l’exploitation des mammifères marins fût pratiquée en deux temps, d’abord au printemps, lors de courtes périodes par des contignents de chasseurs masculins attirés par le phoque du Groenland et puis en été, par des familles entières profitant de la présence de phoques gris et commun. Les pinnipèdes étaient probablement traqués sur la batture ou sur les glaces et abattus à la hache ou à l’arc et à la flèche. Puisque les résidus alimentaires retrouvés dans les vases de cuisson étaient surtout composés de poissons et de mammifères terrestres, il est supposé que des sous-produits de la chasse au phoque aient été rapportés dans la région de Québec et utilisés comme réserve de nourriture, comme matière première ou comme monnaie d’échange. Nous défendons également l’hypothèse que ces excursions dans l’estuaire n’étaient pas nécessairement liées à la précarité de l’agriculture dans la région de Québec puisque cette pratique aurait été adoptée tardivement, soit après 1300 AD et peut être même à partir de 1400 AD. Les données sont issues de six sites ayant fait l’objet de fouilles répartis sur une bande littorale de 40 km de longueur. Il s’agit des sites Ouellet (DaEk-6), Anse-aux-Pilotes IV (DbEj-7), Cap-de-Bon-Désir (109G), Site archéologique des Basques-de-l’Anse-à-la-Cave (DbEi-5), Pointe-à-Crapaud (DbEi-2) et Escoumins I (DcEi-1).

Patrons de distribution des crustacés planctoniques dans le fleuve Saint-Laurent

La recherche porte sur les patrons de distribution longitudinale (amont-aval) et transversale (rive nord - rive sud) des communautés de crustacés planctoniques qui ont été analysés le long du fleuve Saint-Laurent entre le lac Saint-François et la zone de transition estuarienne, à deux hydropériodes en mai (crue) et en août (étiage). Les données zooplanctoniques et environnementales ont été récoltées à 52 stations réparties sur 16 transects transversaux en 2006. Au chapitre 1, nous présentons les principaux modèles écosyst��miques en rivière, une synthèse des facteurs influençant le zooplancton en rivières et les objectifs et hypothèses de recherche. Au chapitre 2, nous décrivons la structure des communautés de zooplancton dans trois zones biogéographiques du fleuve et 6 habitats longitudinaux, ainsi que les relations entre la structure du zooplancton et la distribution spatiale des masses d’eau et les variables environnementales. Au chapitre 3, nous réalisons une partition de la variation des variables spatiales AEM (basées sur la distribution des masses d’eau) et des variables environnementales pour évaluer quelle part de la variation du zooplancton est expliquée par les processus hydrologiques (variables AEM) et les conditions locales (facteurs environnementaux). Le gradient salinité-conductivité relié à la discontinuité fleuve-estuaire a déterminé la distribution à grande échelle du zooplancton. Dans les zones fluviales, la distribution du zooplancton est davantage influencée par la distribution des masses d’eau que par les facteurs environnementaux locaux. La distribution des masses d’eau explique une plus grande partie de la variation dans la distribution du zooplancton en août qu’en mai.

Formation and circulation of the cold intermediate layer in the Gulf of Saint Lawrence

[ 1] The local heat content and formation rate of the cold intermediate layer (CIL) in the Gulf of Saint Lawrence are examined using a combination of new in situ wintertime observations and a three-dimensional numerical model. The field observations consist of five moorings located throughout the gulf over the period of November 2002 to June 2003. The observations demonstrate a substantially deeper surface mixed layer in the central and northeast gulf than in regions downstream of the buoyant surface outflow from the Saint Lawrence Estuary. The mixed-layer depth in the estuary remains shallow (< 60 m) throughout winter, with the arrival of a layer of near-freezing waters between 40 and 100 m depth in April. An eddy-permitting ice-ocean model with realistic forcing is used to hindcast the period of observation. The model simulates well the seasonal evolution of mixed-layer depth and CIL heat content. Although the greatest heat losses occur in the northeast, the most significant change in CIL heat content over winter occurs in the Anticosti Trough. The observed renewal of CIL in the estuary in spring is captured by the model. The simulation highlights the role of the northwest gulf, and in particular, the separation of the Gaspe Current, in controlling the exchange of CIL between the estuary and the gulf. In order to isolate the effects of inflow through the Strait of Belle Isle on the CIL heat content, we examine a sensitivity experiment in which the strait is closed. This simulation shows that the inflow has a less important effect on the CIL than was suggested by previous studies.

Reconstruction of sea-surface conditions at middle to high latitudes of the Northern Hemisphere

A new calibration database of census counts of organic-walled dinoflagellate cyst (dinocyst) assemblages has been developed from the analyses of surface sediment samples collected at middle to high latitudes of the Northern Hemisphere after standardisation of taxonomy and laboratory procedures. The database comprises 940 reference data points from the North Atlantic, Arctic and North Pacific oceans and their adjacent seas, including the Mediterranean Sea, as well as epicontinental environments such as the Estuary and Gulf of St. Lawrence, the Bering Sea and the Hudson Bay. The relative abundance of taxa was analysed to describe the distribution of assemblages. The best analogue technique was used for the reconstruction of Last Glacial Maximum (LGM) sea-surface temperature and salinity during summer and winter, in addition to sea-ice cover extent, at sites from the North Atlantic (n=63), Mediterranean Sea (n=1) and eastern North Pacific (n=1). Three of the North Atlantic cores, from the continental margin of eastern Canada, revealed a barren LGM interval, probably because of quasi-permanent sea ice. Six other cores from the Greenland and Norwegian seas were excluded from the compilation because of too sparse assemblages and poor analogue situation. At the remaining sites (n= 54), relatively close modern analogues were found for most LGM samples, which allowed reconstructions. The new LGM results are consistent with previous reconstructions based on dinocyst data, which show much cooler conditions than at present along the continental margins of Canada and Europe, but sharp gradients of increasing temperature offshore. The results also suggest low salinity and larger than present contrasts in seasonal temperatures with colder winters and more extensive sea-ice cover, whereas relatively warm conditions may have prevailed offshore in summer. From these data, we hypothesise low thermal inertia in a shallow and low-density surface water layer.

Discarge compilation from The Global River Discharge (RivDIS) Project

The Global River Discharge (RivDIS) data set contains monthly discharge measurements for 1018 stations located throughout the world. The period of record varies widely from station to station, with a mean of 21.5 years. These data were digitized from published UNESCO archives by Charles Voromarty, Balaze Fekete, and B.A. Tucker of the Complex Systems Research Center (CSRC) at the University of New Hampshire. River discharge is typically measured through the use of a rating curve that relates local water level height to discharge. This rating curve is used to estimate discharge from the observed water level. The rating curves are periodically rechecked and recalibrated through on-site measurement of discharge and river stage.

Annual report - Saint Lawrence Seaway Development Corporation.

Report year ends June 30.

Location and ages of terrestrial peatlands located on continental shelves and in coastal sediments

This synthesis dataset contains records of freshwater peat and lake sediments from continental shelves and coastal areas. Information included is site location (when available), thickness and description of terrestrial sediments as well as underlying and overlying sediments, dates (when available), and references.

Pleistocene climate fluctuations influence phylogeographical patterns in Melomys cervinipes across the mesic forests of eastern Australia

Aim Our aim was to clarify the lineage-level relationships for Melomys cervinipes and its close relatives and investigate whether the patterns of divergence observed for these wet-forest-restricted mammals may be associated with recognized biogeographical barriers. Location Mesic closed forest along the east coast of Australia, from north Queensland to mid-eastern New South Wales. Methods To enable rigorous phylogenetic reconstruction, divergence-date estimation and phylogeographical inference, we analysed DNA sequence and microsatellite data from 307 specimens across the complete distribution of M. cervinipes (45 localities). Results Three divergent genetic lineages were found within M. cervinipes, corresponding to geographically delineated northern, central and southern clades. Additionally, a fourth lineage, comprising M. rubicola and M. capensis, was identified and was most closely related to the northern M. cervinipes lineage. Secondary contact of the northern and central lineages was identified at one locality to the north of the Burdekin Gap. Main conclusions Contemporary processes of repeated habitat fragmentation and contraction, local extinction events and subsequent re-expansion across both small and large areas, coupled with the historical influence of the Brisbane Valley Barrier, the St Lawrence Gap and the Burdekin Gap, have contributed to the present phylogeographical structure within M. cervinipes. Our study highlights the need to sample close to the periphery of putative biogeographical barriers or risk missing vital phylogeographical information that may significantly alter the interpretation of biogeographical hypotheses.