Diversidad genética de aislamientos de Bacillus subtilis con potencial para el control biológico de Colletotrichum acutatum y Guignardia citricarpa

O setor citrícola enfrenta sérios problemas representados por doenças de flores e frutos jovens que, além de diminuir a produtividade, depreciam os frutos pelo aspecto que conferem aos mesmos. Tais doenças são representadas, principalmente, pela mancha preta dos frutos cítricos (MPC) e pela queda prematura dos frutos cítricos (QPFC), onde a medida predominante de controle é a pulverização com produtos químicos. Entretanto, os custos financeiros e ambientais de aplicações com tais produtos, aliado às crescentes restrições à presença de resíduos, estão a exigir o estudo de novas alternativas. Entre estas, o controle biológico surge como alternativa importante. Sabendo-se que, o conhecimento da biodiversidade dos seres vivos é importante para determinação de suas funções potenciais, o presente trabalho teve por objetivo estudar a diversidade genética, através de marcadores moleculares AFLP, de 32 isolados de B. subtilis com a finalidade de se encontrar, dentre os mesmos, um (ou mais isolados) que apresentasse maior similaridade com o isolado ACB-69, o qual apresenta potencial para o controle da doença. Diante disso, os resultados obtidos neste trabalho, permitiram concluir que: a) os isolados de B. subtilis estudados agruparam-se no filograma de distância genética, independente da procedência ou do hospedeiro; b) os isolados ACB-69 e ACB-83, com potenciais para o controle da queda prematura dos frutos cítricos, compartilham da mesma ancestralidade, o que pode ser inferido pela metodologia aplicada; c) em termos biológicos; o isolado ACB-83 merece mais estudos quanto à viabilidade de controle de doenças de citros, como a queda prematura dos frutos cítricos e a manha preta dos frutos cítricos, sob condições de campo.

Control of Guignardia citricarpa by Bacillus subtilis and Trichoderma spp.

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Características da fermentação e estabilidade aeróbia de silagens de milho inoculadas com Bacillus subtilis

Objetivou-se avaliar os efeitos da inoculação de Bacillus subtilis sobre as características e perdas ocorridas na fermentação, no desenvolvimento de leveduras e fungos filamentosos e na estabilidade aeróbia de silagens de milho. Estudou-se o milho híbrido 2B655, no qual avaliaram-se os seguintes tratamentos: silagem sem inoculação de B. subtilis e silagens inoculadas com B. subtilis nas concentrações de 5x10(4); 1x10(5) e 5x10(5)UFC/g de forragem. O delineamento experimental utilizado foi o inteiramente casualizado, em esquema de parcelas subdivididas, em que as silagens constituíram as parcelas e os tempos de exposição aeróbia as subparcelas, com quatro repetições. Os dados obtidos foram submetidos à análise de variância por meio do software SISVAR®, bem como aplicou-se a análise de regressão a 5% de significância. A aplicação de B. subtilis não alterou as características químicas e as perdas no processo de fermentação da silagem de milho. A contagem de leveduras na abertura dos silos foi reduzida, assim como a população de fungos filamentosos diminuiu durante a exposição aeróbia, o que implicou em menores valores de pH e resultou em maior estabilidade aeróbia, devido à utilização da maior dose de B. subtilis. A inoculação de Bacillus subtilis na concentração de 5x10(5)UFC/g de forragem controla o crescimento dos micro-organismos deterioradores e melhora a estabilidade aeróbia da silagem de milho, a manter os valores de pH mais estáveis na fase de pós-abertura dos silos.

Efeito do probiótico Bacillus subtilis no crescimento, sobrevivência e fisiologia de rãs-touro (Rana catesbeiana)

The probiotics are live microorganisms, in latency state, that benefices the development of the animals. The objective of this work was to evaluate the effect of the Bacillus subtilis in different doses about the growing, survival and immunological and hematological analyses in the Bullfrog (Rana catesbeiana) froglets. The test was developed in Experimental Frog farm of Agriculture Department, Pindamonhangaba, SP. Three doses of probiotics were tested (T1 - 2.5 g/Kg, T2 - 5 g/Kg and T3 - 10 g/Kg of food). The test was carried out with three simultaneous replicates, plus control group. The products were added to froglet's diet and mixed to the meal. The animals were previously feed with this diet for a period of 14 days and accompanied for about 42 days after metamorphose. Biometrics were performed every 7 days. It was evaluated the final weight, the survival, phagocytic capacity, phagocytic index and hematological analyses as hematocrit, hemoglobin level, erythrocyte number, absolute indices hematimetrycs (MCV and MCHC), differential counting of leucocytes and total counting of leucocytes and trombocytes. The results had shown that the doses of the probiotics had produced none effect on the final weight and survival. The immunological analyses had shown that the probiotics have presented immunostimulator effect, but haven't influenced the hematological parameters of the animals.

Predição de promotores de Bacillus subtilis usando técnicas de aprendizado de máquina

One of the most important goals of bioinformatics is the ability to identify genes in uncharacterized DNA sequences on world wide database. Gene expression on prokaryotes initiates when the RNA-polymerase enzyme interacts with DNA regions called promoters. In these regions are located the main regulatory elements of the transcription process. Despite the improvement of in vitro techniques for molecular biology analysis, characterizing and identifying a great number of promoters on a genome is a complex task. Nevertheless, the main drawback is the absence of a large set of promoters to identify conserved patterns among the species. Hence, a in silico method to predict them on any species is a challenge. Improved promoter prediction methods can be one step towards developing more reliable ab initio gene prediction methods. In this work, we present an empirical comparison of Machine Learning (ML) techniques such as Na¨ýve Bayes, Decision Trees, Support Vector Machines and Neural Networks, Voted Perceptron, PART, k-NN and and ensemble approaches (Bagging and Boosting) to the task of predicting Bacillus subtilis. In order to do so, we first built two data set of promoter and nonpromoter sequences for B. subtilis and a hybrid one. In order to evaluate of ML methods a cross-validation procedure is applied. Good results were obtained with methods of ML like SVM and Naïve Bayes using B. subtilis. However, we have not reached good results on hybrid database

Distribuição diária das atividades comportamentais dos camarões marinhos Farfantepenaeus subtilis (Pérez Farfante, 1967) e Litopenaeus schmitti (Burkenroad, 1938) em condições laboratoriais

Marine aquaculture has developed in the last decades all over the world, especially related to shrimp management. In Brazil, the introduction of the species Litopenaeus vannamei has contributed to the success of the activity, even if there are problems associated with the management of a exotic species, such as new diseases and ecological pressure on native species. It has been emphasized the need of research for developing new methodology that will allow native species management, being the most important Farfantepenaeus subtilis and Litopenaeus schmitti. Most knowledge obtained from research with those species has generally used a technical approach and mainly focused feeding process. There are no specific behavioral data on their activity pattern which should be of great importance for the use of native species on commercial culture farms. So, it was our objective to study and compare the daily distribution of behavioral activities of the marine shrimp species Litopenaeus schmitti and Farfantepenaeus subtilis. Forty animals of each species, 5 individuals per aquarium, were maintained in aquaria containing 200L of sea water under continuous aeration and filtration. They were marked individually and were observed by the instantaneous focal time sampling, along 10 continuous days, in 6 daily 15 min observation windows, every two hour. In each window, behaviors and location position of the animals in the aquarium were registered at 1 min intervals. Food was offered 3 times a day, representing 10% of each aquarium biomass. Aquaria were maintained in artificial photoperiod, 12hour light/l2 hour dark, 4 aquaria in light cycle equivalent to the environmental one (light from 06:00 to 17:59 h and dark from 18:00 to 05:59 h) and the other 4 in the reverse light cycle (light from 18:00 to 05:59 h and dark from 06:00 to 17:59 h) to allow sequential behavioral observation in both phases of the 24 hour cycle. There was a clear distinction between the distribution of behavioral activities of F. subtilis and L. schmitti in the two phases. The activity pattern of Farfantepenaeus subtilis demonstrates that species has prominently night habits and a burying pattern during the light cycle. Exploration, inactivity and swimming were the most common activities. The behavioral pattern of Litopenaeus schmitti indicates that species is active along both phases of the light cycle, and the most evident behaviors were exploration, inactivity and swimming

Comportamento alimentar do camarão marinho farfantenaeus subtilis em condições laboratoriais

Shrimp culture represents an important activity to brazilian economy. The northeastern region has presented high levels of production because of its climatic conditions. An important factor for the activity´s major development is related to the introduction of the species Litopenaeus vannamei. The use of an exotic species can disturb the ecosystem. In the last decades, L. vannamei has been the only species cultivated in Brazilian farms, there not being an alternative species for shrimp culture. So, there is an urgent need to developing new studies with the native species, which might represent an alternative concerning shrimp production, with emphasis on Farfantepenaeus subtilis. Another important aspect related to the activity is feeding management, once it is quite usual that feed offer on the pond does not take into account either the species´ physiology and behavior or the influence of environmental variables, such as light cycle and substrate. That knowledge may optimize management and so reduce the impact of effluents in the environment. This study´s objective was characterizing feeding behavior of F. subtilis in laboratory. For that, an ethogram was developed, using 20 wild animals which were observed through ad libitum and all occurrences methods. Two experiments were developed in order to register feeding behavior on different substrates, along 15 days, each. In the first experiment, 40 animals were distributed in eight aquaria, half being observed during the light phase of the 24 hour cycle and the other half in the dark phase, both in halimeda substrate. In the second experiment, 20 animals were distributed in four aquaria, under similar conditions as the previous ones, but in sand substrate. In both experiments, animals were observed respectively one, four, seven and ten hours after the beginning of the phase, for light phase, for the dark phase, in ten minute observation windows, before and immediately after feed offer. The following behaviors were registered: feed ingestion, ingestion of other items, inactivity, exploration, vertical exploration, swimming, crawling, digging, burrowing, and moving by the animals. Observation windows after feed offer also included latency to reach the tray and to ingest feed. Nineteen behaviors were described for the species. F. subtilis presented more behavioral activities in halimeda substrate even in the light phase, while burrowing was predominant in sand substrate. In both substrates, moving, crawling and exploration were more frequent after feed offer, but inactivity and burrowing were more frequent before that. Feed ingestion was more frequent in halimeda, both in light and dark phases. Weight gain was also more prominent in that substrate. In sand substrtate, ingestion was more frequent in the dark phase, which suggests that higher granulometry facilitates feed ingestion in F. subtilis juveniles. Our results demonstrate the importance of studies for the better knowledge of the species, specially its response to environmental stimuli, in order to improve animal management

Effects of the electrolytic treatment on Bacillus subtilis

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Correlation of temperature induced conformation change with optimum catalytic activity in the recombinant G/11 xylanase A from Bacillus subtilis strain 168 (1A1)

The 1.7 angstrom resolution crystal structure of recombinant family G/11 beta-1,4-xylanase (rXynA) from Bacillus subtilis 1A1 shows a jellyroll fold in which two curved P-sheets form the active-site and substrate-binding cleft. The onset of thermal denaturation of rXynA occurs at 328 K, in excellent agreement with the optimum catalytic temperature. Molecular dynamics simulations at temperatures of 298-328 K demonstrate that below the optimum temperature the thumb loop and palm domain adopt a closed conformation. However, at 328 K these two domains separate facilitating substrate access to the active-site pocket, thereby accounting for the optimum catalytic temperature of the rXynA. (c) 2005 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

Evaluation of efficacy of preservatives associated with Achillea millefolium L. extract against Bacillus subtilis

A eficácia antimicrobiana de conservantes empregados em formulações cosméticas foi avaliada usando Phenova® e Imidazolinidil uréia que inibiram o crescimento de Bacillus subtilis no extrato de Achillea millefolium L. e Nipagin®/ Nipasol® 0,2% em propilenoglicol não apresentaram efeito microbicida.

Controle biológico da podridão radicular (Pythium aphanidermatum) e promoção de crescimento por Pseudomonas chlororaphis 63-28 e Bacillus subtilis GB03 em alface hidropônica

Podridões radiculares causadas por espécies de Pythium são um importante problema em cultivos hidropônicos. Sintomas de subdesenvolvimento são observados nas plantas parasitadas pelo patógeno, sendo muitas vezes não diagnosticados pelo produtor. O objetivo do trabalho foi avaliar o controle biológico da podridão radicular causada por Pythium aphanidermatum e a promoção de crescimento por Pseudomonas chlororaphis 63-28 e Bacillus subtilis GB03, reconhecidos agentes de controle biológico de doenças de plantas. A inoculação das plantas com P. aphanidermatum ocasionou o subdesenvolvimento, sendo essa diminuição de 20%. A adição dos agentes de biocontrole na solução nutritiva teve um efeito positivo no aumento da massa (6% a 13%), no número de folhas (4% a 7%) e no teor de clorofila (3%) das plantas de alface. Entretanto, maiores estudos devem ser realizados para melhorar a capacidade de controle da doença e de promoção de crescimento pelos agentes de biocontrole estudados no cultivo de alface hidropônica.

INFLUÊNCIA DE BACILLUS SUBTILIS NA ECLOSÃO, ORIENTAÇÃO E INFECÇÃO DE HETERODERA GLYCINES em SOJA

A utilização de microrganismos para fins de controle biológico de doenças em plantas tem sido muito estudada no mundo. No caso do nematóide de cisto da soja (Heterodera glycines), uma das principais doenças da soja, o controle biológico é de grande importância devido à ausência de controle químico eficiente. Para se estudar o efeito de Bacilllus subtilis sobre H. glycines, foram conduzidos alguns experimentos de casa de vegetação e laboratório. Nos trabalhos de laboratório, verificou-se, em câmara de eclosão, que a presença de B. subtilis reduz a eclosão de ovos de H. glycines estimulados com exsudatos de sementes de soja. Foi observado também que o tratamento de raiz de soja com a bactéria inibiu a migração de larvas juvenis de H. glycines para a planta em comparação à raiz não tratada com a bactéria. Nos ensaios de casa de vegetação, utilizando-se vasos com solo infestados com ovos de H. glycines, observou-se uma redução de fêmeas na raiz de soja quando o solo ou sementes foram tratadas previamente com formulação pó-molhável ou calda contendo B. subtilis, respectivamente. Com base nesses resultados e sabendo-se que H. glycines apresenta dependência de estímulo de exsudatos vegetais para eclosão e orientação das larvas, pode-se afirmar que B. subtilis interfere nesse estímulo prejudicando o desenvolvimento do ciclo do nematóide.

TRATAMENTO DE SEMENTES DE ARROZ, TRIGO, FEIJÃO E SOJA COM UM PRODUTO FORMULADO À BASE DE CÉLULAS E DE METABÓLITOS DE Bacillus subtilis

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)