Spectral assignments based on the 13C NMR spectra of mixed liquid crystals of opposite diamagnetic anisotropies

The proton-decoupled 13C NMR spectra of mixtures of liquid crystals with opposite diamagnetic anisotropies have been studied in the natural abundance of 13C. A new method to assign the spectral lines to specific carbons in the liquid crystalline phase has been developed. For this purpose, the assignments of lines in the isotropic media are required, and they were obtained from two-dimensional hetero-COSY experiments. From the spectra in the �critical� mixtures where both the orientations of the liquid crystal directors, with the alignments along and perpendicular to the direction of the magnetic field, �coexist,� the 13C chemical-shift anisotropies have been determined, assuming uniaxial symmetry.

Spin-Selective Correlation Experiment for Measurement of Long-Range J Couplings and for Assignment of (R/S) Enantiomers from the Residual Dipolar Couplings and DFT

We report the C-HETSERF experiment for determination of long- and short-range homo- and heteronuclear scalar couplings ((n)J(HH) and (n)J(XH), n >= 1) of organic molecules with a low sensitivity dilute heteronucleus in natural abundance. The method finds significant advantage in measurement of relative signs of long-range heteronuclear total couplings in chiral organic liquid crystal. The advantage of the method is demonstrated for the measurement of residual dipolar couplings (RDCs) in enantiomers oriented in the chiral liquid crystal with a focus to unambiguously assign R/S designation in a 2D spectrum. The alignment tensor calculated from the experimental RDCs and with the computed structures of enantiomers obtained by DFT calculations provides the size of the back-calculated RDCs. Smaller root-mean-square deviations (rmsd) between experimental and calculated RDCs indicate better agreement with the input structure and its correct designation of the stereogenic center.

13C-1H HSQC Experiment of Probe Molecules Aligned in Thermotropic Liquid Crystals: Sensitivity and Resolution Enhancement in the Indirect Dimension

The spectra of molecules oriented in liquid crystalline media are dominated by partially averaged dipolar couplings. In the 13C–1H HSQC, due to the inefficient hetero-nuclear dipolar decoupling in the indirect dimension, normally carried out by using a π pulse, there is a considerable loss of resolution. Furthermore, in such strongly orienting media the 1H–1H and 13C–1H dipolar couplings leads to fast dephasing of transverse magnetization causing inefficient polarization transfer and hence the loss of sensitivity in the indirect dimension. In this study we have carried out 13C–1H HSQC experiment with efficient polarization transfer from 1H to 13C for molecules aligned in liquid crystalline media. The homonuclear dipolar decoupling using FFLG during the INEPT transfer delays and also during evolution period combined with the π pulse heteronuclear decoupling in the t1 period has been applied. The studies showed a significant reduction in partially averaged dipolar couplings and thereby enhancement in the resolution and sensitivity in the indirect dimension. This has been demonstrated on pyridazine and pyrimidine oriented in the liquid crystal. The two closely resonating carbons in pyrimidine are better resolved in the present study compared to the earlier work [H.S. Vinay Deepak, Anu Joy, N. Suryaprakash, Determination of natural abundance 15N–1H and 13C–1H dipolar couplings of molecules in a strongly orienting media using two-dimensional inverse experiments, Magn. Reson. Chem. 44 (2006) 553–565].

Phase Characterization and Study of Molecular Order of a Three-Ring Mesogen by (13)C NMR in Smectic C and Nematic Phases

Molecules exhibiting a thermotropic liquid-crystalline property have acquired significant importance due to their sensitivity to external stimuli such as temperature, mechanical forces, and electric and magnetic fields. As a result, several novel mesogens have been synthesized by the introduction of various functional groups in the vicinity of the aromatic core as well as in the side chains and their properties have been studied. In the present study, we report three-ring mesogens with hydroxyl groups at one terminal. These mesogens were synthesized by a multistep route, and structural characterization was accomplished by spectral techniques. The mesophase properties were studied by hot-stage optical polarizing microscopy, differential scanning calorimetry, and small-angle X-ray scattering. An enantiotropic nematic phase was noticed for lower homologues, while an additional smectic C phase was found for higher homologues. Solid-state high-resolution natural abundance (13)C NMR studies of a typical mesogen in the solid phase and in the mesophases have been carried out. The (13)C NMR spectrum of the mesogen in the smectic C and nematic phases indicated spontaneous alignment of the molecule in the magnetic field. By utilizing the two-dimensional separated local field (SLF) NMR experiment known as SAMPI4, (13)C-(1)H dipolar couplings have been obtained, which were utilized to determine the orientational order parameters of the mesogen.

NMRof peptides

Developments and applications of NMR spectroscopy especially with biomolecules has taken big strides over the decades. This review gives a brief overview of peptide analysis by NMR as carried out in the author’s laboratory. A brief introduction to peptide biomolecules and NMR useful parameters are discussed in the beginning. This is followed by diagnostics features observed in NMR for identification of secondary structures. It further goes on to show how a three dimensional structure could be obtained by all-important NOE and hydrogen bond information. Use of heteronuclear experiments, which could be done at natural abundance is also highlighted in getting more details of peptide structures.Applications using Solid state NMR at natural abundance in connecting peptide solution and x-ray structures is demonstrated with couple of examples.

Intra-molecular hydrogen bonding with organic fluorine in the solution state: Deriving evidence by a two dimensional NMR experiment

The direct evidence for the existence of intra-molecular C-F center dot center dot center dot H-N hydrogen bond in organofluorine molecules, in the liquid state, is derived using NMR spectroscopy by the detection of long range interactions among fluorine, nitrogen and hydrogen atoms. The present study reports the determination of the relative signs and magnitudes of through space and through bond couplings to draw unambiguous evidence on the existence of weak molecular interactions involving organic fluorine. It is a simple, easy to implement, N-15 natural abundant two dimensional heteronuclear N-15-H-1 double quantum-single quantum correlation experiment. The existence of intra-molecular hydrogen bond is conclusively established in the investigated molecules. (C) 2011 Elsevier B.V. All rights reserved.

NMR Analysis of Cross Strand Aromatic Interactions in an 8 Residue Hairpin and a 14 Residue Three Stranded beta-Sheet Peptide

Cross strand aromatic interactions between a facing pair of phenylalanine residues in antiparallel beta-sheet structures have been probed using two structurally defined model peptides. The octapeptide Boc-(LFVPPLFV)-P-D-P-L-OMe (peptide 1) favors the beta-hairpin conformation nucleated by the type II' beta-turn formed by the (D)Pro-(L)Pro segment, placing Phe2 and Phe7 side chains in proximity. Two centrally positioned (D)Pro-(L)Pro segments facilitate the three stranded beta-sheet formation in the 14 residue peptide Boc-LFV(D)P(L)PLFVA(D)P(L)PLFV-OMe (peptide 2) in which the Phe2/Phe7 orientations are similar to that in the octapeptide. The anticipated folded conformations of peptides 1 and 2 are established by the delineation of intramolecularly hydrogen bonded NH groups and by the observation of specific cross strand NOEs. The observation of ring current shifted aromatic protons is a diagnostic of close approach of the Phe2 and Phe7 side chains. Specific assignment of aromatic proton resonances using HSQC and HSQC-TOCSY methods allow an analysis of interproton NOEs between the spatially proximate aromatic rings. This approach facilitates specific assignments in systems containing multiple aromatic rings in spectra at natural abundance. Evidence is presented for a dynamic process which invokes a correlated conformational change about the C-alpha-C-beta(chi(1)) bond for the pair of interacting Phe residues. NMR results suggest that aromatic ring orientations observed in crystals are maintained in solution. Anomalous temperature dependence of ring current induced proton chemical shifts suggests that solvophobic effects may facilitate aromatic ring clustering in apolar solvents.

Simultaneous acquisition of three NMR spectra in a single experiment for rapid resonance assignments in metabolomics

NMR-based approach to metabolomics typically involves the collection of two-dimensional (2D) heteronuclear correlation spectra for identification and assignment of metabolites. In case of spectral overlap, a 3D spectrum becomes necessary, which is hampered by slow data acquisition for achieving sufficient resolution. We describe here a method to simultaneously acquire three spectra (one 3D and two 2D) in a single data set, which is based on a combination of different fast data acquisition techniques such as G-matrix Fourier transform (GFT) NMR spectroscopy, parallel data acquisition and non-uniform sampling. The following spectra are acquired simultaneously: (1) C-13 multiplicity edited GFT (3,2)D HSQC-TOCSY, (2) 2D H-1- H-1] TOCSY and (3) 2D C-13- H-1] HETCOR. The spectra are obtained at high resolution and provide high-dimensional spectral information for resolving ambiguities. While the GFT spectrum has been shown previously to provide good resolution, the editing of spin systems based on their CH multiplicities further resolves the ambiguities for resonance assignments. The experiment is demonstrated on a mixture of 21 metabolites commonly observed in metabolomics. The spectra were acquired at natural abundance of C-13. This is the first application of a combination of three fast NMR methods for small molecules and opens up new avenues for high-throughput approaches for NMR-based metabolomics.

Synthesis, and crystal and electronic structure of sodium metal phosphate for use as a hybrid capacitor in non-aqueous electrolyte

Energy storage devices based on sodium have been considered as an alternative to traditional lithium based systems because of the natural abundance, cost effectiveness and low environmental impact of sodium. Their synthesis, and crystal and electronic properties have been discussed, because of the importance of electronic conductivity in supercapacitors for high rate applications. The density of states of a mixed sodium transition metal phosphate (maricite, NaMn1/3Co1/3Ni1/3PO4) has been determined with the ab initio generalized gradient approximation (GGA)+Hubbard term (U) method. The computed results for the mixed maricite are compared with the band gap of the parent NaFePO4 and the electrochemical experimental results are in good agreement. A mixed sodium transition metal phosphate served as an active electrode material for a hybrid supercapacitor. The hybrid device (maricite versus carbon) in a nonaqueous electrolyte shows redox peaks in the cyclic voltammograms and asymmetric profiles in the charge-discharge curves while exhibiting a specific capacitance of 40 F g(-1) and these processes are found to be quasi-reversible. After long term cycling, the device exhibits excellent capacity retention (95%) and coulombic efficiency (92%). The presence of carbon and the nanocomposite morphology, identified through X-ray photoelectron spectroscopy (XPS) and transmission electron microscopy (TEM) studies, ensures the high rate capability while offering possibilities to develop new cathode materials for sodium hybrid devices.

家畜放牧对典型草原土壤-植被系统氮素转化的影响

草地生态系统中，放牧对调节物质流动和营养循环起着关键的作用。内蒙古地区已有上千年的游牧历史，放牧是该地区重要的草地利用方式之一。然而，近50年来，由于人口的剧增以及对草原的不合理利用与管理，使得内蒙古草原发生了严重的退化与沙漠化。理解放牧对氮循环的定量影响，对我们更合理地利用草地、防治生态系统的进一步退化以及探求最佳恢复途径都具有重要的意义。中国科学院内蒙古草原生态系统定位站精准设置的5种放牧强度处理（0.00, 1.33, 2.67, 4.00, 5.33 羊/公顷）为我们的研究提供了理想的平台。2005、2006年生长季期间，在经过16年不同放牧强度处理的一个典型草原样地上，我们测定了氮素输入（氮沉降、生物固氮）、转化（净氮矿化）、输出（反硝化及氨气挥发）速率等N循环的重要参量。同时，测定了微生物生物量碳、氮（Cmic，Nmic）及微生物呼吸（Rmic），研究了微生物在氮循环中的作用。另外，还测定了植物、土壤、固氮体中的15N自然丰度值，探讨了其对不同放牧强度的响应格局与机理。 结果表明，干湿混合沉降物全氮浓度最高达11.53 mg N l–1，沉降量最高为1.77 kg N ha–1m–1。月均氮沉降量与浓度正相关，它们与降水量均关系密切，前者更密切。结皮面积所占比例很小，不超过8%。结皮含氮量为1.01-1.43 g N kg–1，受放牧的影响不显著，但随放牧强度的增加有降低的趋势。土壤结皮能固氮，但固氮量不超过土壤氮含量的1倍。地耳的固氮量为结皮的10-20倍，故是主要的固氮体。尽管地耳含氮量受放牧影响不显著，但放牧是不放牧条件下地耳氮含量的1.58倍。 土壤NH4+-N浓度随季节变化范围为1.71-9.45 µg N g–1，它们在各放牧处理之间的差异不显著。土壤NO3–-N浓度变幅为0.27-11.21 µg N g–1。总无机氮浓度在不放牧条件下的变幅为2.69-14.57 µg N g–1，占总氮的0.49-2.6%;放牧条件下的变幅为2.49-8.66 µg N g–1，占总氮的0.35-1.21%。总无机氮浓度随季节和放牧强度的变化趋势与硝态氮相似，表现为2005年夏季期间有逐渐增加的趋势，而在2006年整个生长季期间有逐渐降低的趋势。不放牧比放牧条件下含氮量高，但在4个放牧处理之间的差异不显著。净氮矿化速率的变幅为–0.61-0.27 µg N g–1d–1，峰值通常出现在7月。净氮矿化速率在各处理间没有一致性差异，但中牧（2.67、4.00 羊/公顷）通常比重牧（5.33 羊/公顷）下的值高。净氮硝化速率通常很低，波动在–0.32-0.16 µg N g–1之间，2005年夏季及2006年春秋季的值相对较高。净氮硝化速率在各放牧处理之间差异不显著，但重牧条件下的值通常最低。累积净氮转化量在年际间差异大，2005年总体上遵循正态分布模式，而2006年随着放牧强度的增加有直线下降的趋势，2006年比2005年的累积量高。土壤温度和湿度比放牧强度对净氮矿化的影响更加显著。放牧强度通过调节这两个土壤因子对氮动态而产生间接影响。 反硝化和N2O的释放速率低，前者变幅为0.33-6.21µg N kg–1 d–1，后者为0.42-11.28 µg N kg–1 d–1。释放量夏季较强，春秋较弱。放牧对反硝化释放影响不显著，只在2005年对N2O释放影响显著。尽管如此，反硝化和N2O释放速率整体表现出在不放牧比放牧条件下高的趋势，且比最高放牧强度5.33 羊/公顷下的反硝化速率显著高。然而，它们在4个放牧处理之间的差异始终不显著。累积反硝化和N2O释放存在年际变化，2006年的值显著高。它们随着放牧强度的递增有逐渐降低的趋势，这在2006年表现得尤为明显，这种结果主要归因于土壤总氮量在长期放牧条件下随放牧压力的增加而逐渐降低。 氨气挥发速率变幅为0.88-3.52 g N ha–1d–1，高峰值出现在5月，2005比2006年同期的速率大。两年间放牧强度对氨气挥发的影响都较弱，2005年影响更弱。不放牧条件下的氨气挥发量通常最低，这在生长季的前期表现得更为明显，中牧及重牧条件下通常最高。放牧能影响氨气挥发与氨态氮，硝态氮及总无机氮浓度之间的关系，即不放牧条件下相关性显著，而放牧条件下相关性不显著。年际间氨气挥发速率与无机氮浓度之间的关系趋势相反，2005年负相关，2006年正相关。在水分充足的2006年，所有处理条件下氨气挥发与土壤水分及温度之间显著相关，但在单独每个放牧处理下，相关性不显著。 Cmic变幅大，为13.97-350.45 μg C g–1，占土壤总有机碳的1.58-8.35%。最高和最低值分别出现在夏季和春季。它们在各处理间差异不显著，不放牧下的值相对偏高。Cmic与土壤有机C和全N、前期的立枯、凋落量及含N量、优势种前期的地上生物量、根系生物量、土壤温度以及水分之间关系密切。氮素状态如氨态氮、总无机氮含量、反硝化以及N2O释放速率，氨气挥发速率与Cmic之间关系密切。Nmic占土壤全氮的0.41-2.74%，不受季节和放牧强度的显著影响。Nmic与可溶性N，表土层根系全N，立枯有机C，地上生物量之间关系密切。氮循环过程中氨气挥发速率受Nmic的影响。Rmic随季节而变化，通常5月份值最高。Rmic随着放牧强度的增加有稍降低的趋势。Rmic与土壤可溶性C、有机C，不同土层根系有机C，凋落物、立枯量及其C、N含量、全N，地上生物量，优势种前期的生物量，土壤温度之间关系密切。土壤氮循环动态如氨态氮、硝态氮、总无机氮浓度及反硝化速率与Rmic之间关系密切。 土壤、植物、地耳、生物结皮的δ15N值与放牧强度之间相关关系不显著。然而，放牧有增加表层土和植物的δ15N值而降低表土、地耳、结皮的δ15N值的趋势。表层土δ15N值与前一年生长季末期硝态氮及总无机氮浓度，反硝化速率及累积氨气挥发之间密切相关。 土壤碳含量的变幅为10.44-17.19 g C kg–1，全氮量的变幅为0.54-0.82 g N kg–1。长期的高强度放牧降低了土壤碳、氮储量。根系碳、氮含量分别为土壤碳、氮含量的40-50和10倍。立枯和凋落物有机碳含量变幅为446.94-507.01 g C kg–1，与放牧强度之间关系不密切;氮含量变幅为4.58-7.18 g N kg–1，与放牧强度之间显著负相关。优势种木地肤、冷蒿的含碳量与放牧强度之间相关不显著，但含氮量与之显著相关。 综述以上结果，不同放牧强度对内蒙草地生态系统氮循环中不同过程产生影响的程度各不相同，这种影响主要是通过它与土壤环境因子如温度、水分的联合作用而间接产生。

SPECTROSCOPIC INVESTIGATION OF HYDROGEN-DOPANT COMPLEXES IN BULK P-TYPE AND IMPLANTED N-TYPE CRYSTALLINE SILICON

Infrared absorption experiments have been performed on hydrogenated and deuterated bulk boron- and aluminum-doped-Si and implanted P, As, and Sb donors in silicon. A first evidence of complex formation in bulk p-type Si is obtained and the spectra confirm the anomalous 3.3-cm-1 deuterium frequency shift with respect to boron isotopes. The ratio of the D-B-11 and D-B-10 peak areas is found to be the same as that of the two boron isotopes natural abundance. In donor-implanted silicon, a quantitative analysis of the obtained data has allowed a rough estimate of the passivating rate due to diffusing deuterium. While the frequencies of the various vibrational lines are found to be in agreement with those reported in the literature, the data on the broad line at 1660 cm-1 (H) or 1220 cm-1 (D) seem to suggest an assignment of this peak to a complex in the bulk involving some type of defect due to the implantation process.

Laser-heated high-temperature NMR - a time-resolution study

Submitted to Appl Magn Reson Sponsorship: EPSRC / EU

Variation in stable carbon isotope fractionation during aerobic degradation of phenol and benzoate by contaminant degrading bacteria

Variation in the natural abundance stable carbon isotope composition of respired CO2 and biomass has been measured for two types of aerobic bacteria found in contaminated land sites. Pseudomonas putida strain NCIMB 10015 was cultured on phenol and benzoate and Rhodococcus sp. I-1 was cultured on phenol. Results indicate that aerobic isotope fractionations of differing magnitudes occur during aerobic biodegradation of these substrates with an isotopic depletion in the CO2 (Delta(13)C(phenol-CO2)) as much as 3.7 parts per thousand and 5.6 parts per thousand for Pseudomonas putida and Rhodococcus sp. I-1 respectively. This observation has significant implications for the use of a stable isotope mass balance approach in monitoring degradation processes that rely on indigenous bacterial populations. The effects of the metabolic pathway utilised in degradation and inter-species variation on the magnitude of isotope fractionation are discussed. Possible explanations for the observed isotope fractionation include differences in the metabolic pathways utilised by the organisms and differences in specific growth rates and physiology. (C) 1999 Elsevier Science Ltd. All rights reserved.

Young, Old, and Weathered Carbon—Part 2: Using Radiocarbon and Stable Isotopes to Identify Terrestrial Carbon Support of the Food Web in an Alkaline, Humic Lake

Carbon (C) and nitrogen (N) stable isotope analysis (SIA) has been used to identify the terrestrial subsidy of freshwater food webs. However, SIA fails to differentiate between the contributions of old and recently fixed terrestrial C and consequently cannot fully determine the source, age, and biochemical quality of terrestrial carbon. Natural abundance radiocarbon (∆14C) was used to examine the age and origin of carbon in Lower Lough Erne, Northern Ireland. 14C and stable isotope values were obtained from invertebrate, algae, and fish samples, and the results indicate that terrestrial organic C is evident at all trophic levels. High winter δ15N values in calanoid zooplankton (δ15N = 24‰) relative to phytoplankton and particulate organic matter (δ15N = 6‰ and 12‰, respectively) may reflect several microbial trophic levels between terrestrial C and calanoid invertebrates. Winter and summer calanoid ∆14C values show a seasonal switch between autochthonous and terrestrial carbon sources. Fish ∆14C values indicate terrestrial support at the highest trophic levels in littoral and pelagic food webs. 14C therefore is useful in attributing the source of carbon in freshwater in addition to tracing the pathway of terrestrial carbon through the food web.

Understanding the Origin of Selectivity in the Asymmetric Lithiation Reaction of N-Heterocycles: A Theoretical Study

The natural abundance of the N-heterocycle containing compounds has pushed the synthetic community toward the invention of new synthetic methods that result in the structural diversity of N-heterocycles. Among this, is the efficient and highly selective diamine mediated asymmetric lithiation process. Amongst the diamine chiral ligands, (-)-sparterine, which is a naturally occurring alkaloid proved to be an efficient one. Many successful, good yielding and highly selective lithiation reactions have been accomplished with the mediation by this chiral diamine base. Although, there are some examples of experimental and theoretical mechanistic studies in the literature, there is a lack of detailed understanding as to how it exactly induces the chirality. In this thesis is described a systematic investigation of how (-)-sparteine influences the stereoselectivity in the course of asymmetric lithiation reaction. This led us to the establishment of the function of A-ring’s β-CH2 effect and D-ring effect. Consequently, the importance of the A-ring and D-ring portions of (-)-sparteine in the stereoselectivity is unraveled. Another part of this thesis deals with the asymmetric lithiation of BF3-activated N,N- dimethylaminoferrocene in the presence of (1R, 2R)-N1,N2-bis(3,3-dimethylbutyl)-N1,N2-dimethylcyclohexane-1,2-diamine ( a (R,R)-TMCDA surrogate) with i-PrLi. Computational findings were in full accord with the experimental observations. Subsequently, the theoretically provided insights into the mechanism of the reaction were exploited in computational design of a new ligand. Unfortunately, the outcome of this design was not experimentally robust and an updated approach towards a successful design was explained.