Novel hydrolysis-probe based qPCR assay to detect saxitoxin transcripts of dinoflagellates in environmental samples

Paralytic Shellfish Poisoning (PSP) is a serious human illness caused by ingestion of seafood enriched with paralytic shellfish toxins (PSTs). PSTs are neurotoxic compounds produced by marine dinoflagellates, specifically by Alexandrium spp., Gymnodinium catenatum and Pyrodinium bahamense. Every year, massive monitoring of PSTs and their producers is undertaken worldwide to avoid PSP incidences. Here we developed a sensitive, hydrolysis probe-based quantitative PCR (qPCR) assay to detect a gene essential for PST synthesis across different dinoflagellate species and genera and tested it on cDNA generated from environmental samples spiked with Alexandrium minutum or Alexandrium fundyense cells. The assay was then applied to two environmental sample series from Norway and Spain and the results were complemented with cell counts, LSU-based microarray data and toxin measurements (enzyme-linked immunosorbent assay (ELISA) and surface plasmon resonance (SPR) biosensor method). The overall agreement between the results of the qPCR assay and the complementary data was good. The assay reliably detected sxtA transcripts from Alexandrium spp. and G. catenatum, even though Alexandrium spp. cell concentrations were mostly so low that they could not be quantified microscopically. Agreement between the novel assay and toxin measurements or cell counts was generally good; the few inconsistencies observed were most likely due to disparate residence times of sxtA transcripts and PSTs in seawater, or, in the case of cell counts, to dissimilar sxtA4 transcript numbers per cell in different dinoflagellate strains or species. © 2013 Elsevier B.V.

NEWLY RECOGNIZED AUTOSOMAL RECESSIVE FACIOTHORACOSKELETAL SYNDROME

We report on 2 brothers, born to consanguineous parents presenting thin/long face, small ears, blepharophimosis, malar hypoplasia, long neck, pectus excavatum, brachy-camptodactyly, and sacral dimple. We suspect that these patients represent a previously undescribed autosomal recessive syndrome. (C) 1994 Wiley-Liss, Inc.

The Nuss procedure made safer: an effective and simple sternal elevation manoeuvre

The Nuss procedure requires the creation of a substernal tunnel for bar positioning. This is a manoeuvre that can be dangerous, and cardiac perforation has occurred in a few cases. Our purpose was to describe two technical modifications that enable the prevention of these fatal complications. A series of 25 patients with pectus excavatum were treated with a modification of the Nuss procedure that included the entrance in the left haemithorax first, and the use of the retractor to lift the sternum, with the consequent lowering displacement of the heart. These modified techniques have certain advantages: (i) the narrow anterior mediastinum between the sternum and the pericardial sac is expanded by pulling up the sternum; (ii) the thoracoscopic visualization of the tip of the introducer during tunnel creation is improved; (iii) the rubbing of the introducer against the pericardium is minimized; (iv) the exit path of the introducer can be guided by the surgeon's finger and (v) haemostasis and integrity of the pericardial sac can be more easily confirmed. We observed that with these manoeuvres, the risk of pericardial sac and cardiac injury can be markedly reduced.

Tracing latitudinal gradient, river discharge and water masses along the Subtropical South American Coast using benthic Foraminifera assemblages

More than 30% of Buccella peruviana (D'Orbigny), Globocassidulina crassa porrecta (Earland & Heron-Allen), Cibicides mackannai (Galloway & Wissler) and C. refulgens (Montfort) indicate the presence of cold Sub Antarctic Shelf Water in winter, from 33.5 to 38.3 degrees S, deeper than 100 m, in the southern part of the study area. In summer, the abundance of this association decreases to less than 15% around 37.5-38.9 degrees S where two species (Globocassidulina subglobosa (Brady), Uvigerina peregrina (Cushman) take over. G. subglobosa, U. peregrina, and Hanzawaia boueana (D'Orbigny) are found at 27-33 degrees S in both seasons in less than 55 m deep in the northern part, and are linked with warm Subtropical Shelf Water and Tropical Water. Freshwater influence was signalized by high silicate concentration and by the presence of Pseudononion atlanticum (Cushman), Bolivina striatula (Cushman), Buliminella elegantissima (D'Orbigny), Bulimina elongata (D'Orbigny), Elphidium excavatum (Terquem), E. poeyanum (D'Orbigny), Ammobaculites exiguus (Cushman & Bronnimann), Arenoparrella mexicana (Kornfeld), Gaudryina exillis (Cushman & Bronnimann), Textularia earlandi (Parker) and thecamoebians in four sectors of the shelf. The presence of Bulimina marginata (D'Orbigny) between 34.1-32.8 degrees S in the winter and 34.2-32.7 degrees S in the summer indicates that the influence of the Subtropical Shelf Front on the sediment does not change seasonally, otherwise, the presence of Angulogerina angulosa (Williamson) in the winter, only in Mar del Plata (38.9 degrees S), show that Malvinas currents are not influencing the sediment in the summer.

Tracing latitudinal gradient, river discharge and water masses along the subtropical South American coast using benthic Foraminifera assemblages

More than 30% of Buccella peruviana (D'Orbigny), Globocassidulina crassa porrecta (Earland & Heron-Allen), Cibicides mackannai (Galloway & Wissler) and C. refulgens (Montfort) indicate the presence of cold Sub Antarctic Shelf Water in winter, from 33.5 to 38.3º S, deeper than 100 m, in the southern part of the study area. In summer, the abundance of this association decreases to less than 15% around 37.5-38.9º S where two species (Globocassidulina subglobosa (Brady), Uvigerina peregrina (Cushman) take over. G. subglobosa, U. peregrina, and Hanzawaia boueana (D'Orbigny) are found at 27-33º S in both seasons in less than 55 m deep in the northern part, and are linked with warm Subtropical Shelf Water and Tropical Water. Freshwater influence was signalized by high silicate concentration and by the presence of Pseudononion atlanticum (Cushman), Bolivina striatula (Cushman), Buliminella elegantissima (D'Orbigny), Bulimina elongata (D'Orbigny), Elphidium excavatum (Terquem), E. poeyanum (D'Orbigny), Ammobaculites exiguus (Cushman & Brönnimann), Arenoparrella mexicana (Kornfeld), Gaudryina exillis (Cushman & Brönnimann), Textularia earlandi (Parker) and thecamoebians in four sectors of the shelf. The presence of Bulimina marginata (D'Orbigny) between 34.1-32.8º S in the winter and 34.2-32.7º S in the summer indicates that the influence of the Subtropical Shelf Front on the sediment does not change seasonally, otherwise, the presence of Angulogerina angulosa (Williamson) in the winter, only in Mar del Plata (38.9º S), show that Malvinas currents are not influencing the sediment in the summer.

Evolución Paleoambiental de la Bahia de Montevideo - (Uruguay) Bases para el Estabelecimento de un modelo ambiental

La acción modificadora del hombre como agente geológico deja su rastro en el sedimento permitiendo así el estudiar las transformaciones del ambiente y el registro de los procesos antrópicos. De esta forma, la determinación de cuando ocurrieron los primeros episodios de contaminación antrópica, y la evaluación de la respuesta del sistema a tales eventos constituye una herramienta potencial para fines de manejo. La Bahía de Montevideo está integrada al sector fluvio‐marino del Río de la Plata y la mayoría de su agua proviene de éste. Este sistema ha sufrido grandes presiones antrópicas en los últimos 100‐150 años lo que ha provocado importantes consecuencias negativas sobre el ecosistema. El objetivo del presente trabajo es evaluar el registro histórico, analizando las capas más superficiales de sedimento de un testigo de 200 cm para determinar la historia de los cambios recientes causados por la presión humana en la Bahía de Montevideo. En este sentido fue aplicado un análisis integrado de los parámetros geoquímicos y foraminíferos. Fue posible diferenciar tres zonas en la columna sedimentaria. La zona I definida desde la base del testigo hasta los 110 cm de profundidad está constituida por altos porcentajes de arena, bajas concentraciones de materia orgánica y bajos valores de susceptibilidad magnética. Los foraminíferos estuvieron representados por especies generalistas, calcáreas y mixoalinas tales como A. tepida, A. parkinsoniana, E. excavatum y E. gunteri. La zona II (intervalo 110 y 60 cm) caracterizada por una marcada disminución en el tamaño del sedimento (altos porcentajes de limo y arcilla), alto porcentaje de materia orgánica y aumento en la SM. Los foraminíferos presentaron bajos valores de densidad, diversidad y riqueza. Las especies dominantes fueron Psammosphera sp. y H. wilberti (ambas de paredes aglutinantes, características de ambientes oligohalinos y ricos en materia orgánica). La zona III corresponde a los últimos 100 años. Se observó que los cambios ambientales registrados en la región condujeron a la presencia de altas concentraciones de metales pesados en la columna sedimentaria así como a grandes cambios en la distribución de la fauna de foraminíferos. Los valores máximos de Cr, Cu y Pb en la Zona III son 70, 14 y 12 veces mayores que el valor mínimo registrado para cada metal, respectivamente, en el testigo estudiado. Todos los metales analizados ‐ indicadores de polución ‐ presentan una tendencia al aumento desde la base de la tercera zona hacia el tope del testigo. El factor de enriquecimiento (FE) muestra claramente que todos los metales presentan la misma tendencia de aumento en la tercera zona con un incremento marcado en las camadas superiores de la columna sedimentaria. De acuerdo con los valores del FE el Cr presenta un nivel de polución entre significativo y alto. El Pb y el Zn indicaron ambos polución moderada. El incremento en los vertidos industriales en la región de la Bahía de Montevideo provocó un cambio dramático en las características químicas del sedimento (alrededor de 10‐15 cm, 1983 AD) y consecuentemente en la fauna de foraminíferos (disminución en los valores de diversidad, riqueza y densidad) llevándola a un empobrecimiento con momentos casi azoicos.

Evaluation of Iron as a Triggering Factor for Red Tide Blooms

We have examined the relationship between Fe and blooms of the toxic dinoflagellate Alexandrium tamarense (Balech) (formerly Gonyaulax tamarensis var. excavata (Lebour)) using a chemical method that estimates the biological availability of Fe in seawater. The Fe requirement for optimal growth of A. tamarense in sequential batch culture (ca 3 nM 'available' Fe) was compared with Fe concentrations in waters of the Gulf of Maine, USA. Results indicated that Fe did not limit growth of the organism in nearshore coastal waters or over Georges Bank, but that the organism may have been Fe-limited in Gulf of Maine basin waters. The distribution of A. tamarense in the Gulf of Maine is consistent with these Fe data. Red tide outbreaks in the nearshore environment did not correlate with changes in total Fe or the estimated Fe availability. Although Fe did not appear to trigger outbreaks of A. tamarense in Maine coastal waters, the findings are consistent with suggestions that pulsed inputs of Fe may be important for the development of toxic dinoflagellate blooms in regions (e.g. Florida) where outbreaks are initiated offshore.

Stable carbon and oxygen isotope record of foraminifera of IODP Site 303-1307

A major tipping point of Earth's history occurred during the mid-Pliocene: the onset of major Northern-Hemisphere Glaciation (NHG) and of pronounced, Quaternary-style cycles of glacial-to-interglacial climates, that contrast with more uniform climates over most of the preceding Cenozoic and continue until today (Zachos et al., 2001, doi:10.1126/science.1059412). The severe deterioration of climate occurred in three steps between 3.2 Ma (warm MIS K3) and 2.7 Ma (glacial MIS G6/4) (Lisiecki and Raymo, 2005, doi:10.1029/2004PA001071). Various models (sensu Driscoll and Haug, 1998, doi:10.1126/science.282.5388.436) and paleoceanographic records (intercalibrated using orbital age control) suggest clear linkages between the onset of NHG and the three steps in the final closure of the Central American Seaways (CAS), deduced from rising salinity differences between Caribbean and the East Pacific. Each closing event led to an enhanced North Atlantic meridional overturning circulation and this strengthened the poleward transport of salt and heat (warmings of +2-3°C) (Bartoli et al., 2005, doi:10.1016/j.epsl.2005.06.020). Also, the closing resulted in a slight rise in the poleward atmospheric moisture transport to northwestern Eurasia (Lunt et al., 2007, doi:10.1007/s00382-007-0265-6), which probably led to an enhanced precipitation and fluvial run-off, lower sea surface salinity (SSS), and an increased sea-ice cover in the Arctic Ocean, hence promoting albedo and the build-up of continental ice sheets. Most important, new evidence shows that the closing of the CAS led to greater steric height of the North Pacific and thus doubled the low-saline Arctic Throughflow from the Bering Strait to the East Greenland Current (EGC). Accordingly, Labrador Sea IODP Site 1307 displays an abrupt but irreversible EGC cooling of 6°C and freshening by ~2 psu from 3.25/3.16-3.00 Ma, right after the first but still reversible attempt of closing the CAS.