Differential insertion of GPI-anchored GFPs into lipid rafts of live cells.

Partitioning of proteins in cholesterol and sphingolipid enriched plasma membrane microdomains, called lipid rafts, is critical for many signal transduction and protein sorting events. Although raft partitioning of many signaling molecules remains to be determined, glycosylphosphatidyl-inositol (GPI)-anchored proteins possess high affinity for lipid rafts and are currently exploited as markers to investigate fundamental mechanisms in protein sorting and signal transduction events. In this study, we demonstrate that two recombinant GPI-anchored green fluorescent proteins (GFP-GPIs) that differ in their GPI signal sequence confer distinct localization in plasma membrane microdomains. GFP fused to the GPI signal of the decay accelerating factor GFP-GPI(DAF) partitioned exclusively in lipid rafts, whereas GFP fused to the GPI signal of TRAIL-R3, GFP-GPI(TRAIL-R3), associated only minimally with microdomains. In addition, we investigated the unique ability of purified GFP-GPIs to insert into membrane microdomains of primary lymphocytes. This cell surface painting allows rapid, stable, and functional association of the GPI-anchored proteins with the target cell plasma membrane. The distinct membrane localization of the two GFP-GPIs was observed irrespective of whether the GPI-anchored molecules were painted or transfected. Furthermore, we show that painted GFP-GPI(DAF) was totally dependent on the GPI anchor and that the membrane insertion was increased by the addition of raft-associated lipids such as cholesterol, sphingomyelin, and dipalmitoyl-phosphatidylethanolamine. Thus, this study provides evidence that different GPI signal sequences lead to distinct membrane microdomain localization and that painted GFP-GPI(DAF) serves as an excellent fluorescent marker for lipid rafts in live cells.

Efeitos do preparo do solo, plantio direto e de rotações de culturas sobre o rendimento e a economicidade do feijoeiro irrigado

O objetivo deste trabalho foi identificar os efeitos de sistemas de preparo do solo e de rotações de culturas sobre o rendimento de grãos e economicidade da cultura do feijoeiro (Phaseolus vulgaris L.) irrigado pelo sistema pivô central. O trabalho foi conduzido durante seis anos consecutivos, na Embrapa-Centro Nacional de Pesquisa de Arroz e Feijão, localizado no Município de Santo Antônio de Goiás, GO, em Latossolo Vermelho-Escuro, de textura argilosa. O experimento consistiu de um fatorial 4 x 6, em delineamento inteiramente casualizado, com parcelas subdivididas. Os sistemas de preparo do solo foram: P1 arado de aiveca (novembro-dezembro) alternado com grade aradora (maio-junho); P2 arado de aiveca contínuo; P3 grade aradora contínua; P4 plantio direto; e as rotações de culturas: R1 arroz-feijão; R2 milho-feijão; R3 soja-trigo, R4 soja-trigo-soja-feijão-arroz-feijão; R5 arroz consorciado com calopogônio-feijão; e R6 milho-feijão-milho-feijão-arroz -feijão. As rotações R1, R2, R3 e R5 foram anuais, e as R4 e R6, trienais. Neste trabalho analisaram-se somente as rotações que continham feijão. O arroz, o milho e a soja foram semeados em novembro-dezembro (verão), e o feijão e o trigo, em maio-junho (inverno). Houve efeito do preparo do solo e das rotações de cultura sobre o rendimento de grãos do feijoeiro. A cultura produziu mais quando se utilizou no preparo do solo a combinação de arado de aiveca, nos cultivos de verão, e grade aradora nos de inverno. Os rendimentos do feijoeiro foram maiores quando a cultura foi implantada bienalmente na mesma área, nas rotações com arroz/calopogônio e arroz, e menores, nas rotações com milho. O feijoeiro irrigado, com relação ao preparo do solo e rotações de culturas, foi economicamente viável, propiciando taxas de retorno que variaram de 67% a 97%.

Nodulação e fixação do dinitrogênio em soja tratada com sulfentrazone

Em condições de casa de vegetação, avaliou-se o efeito de doses (0, 36, 72, 108 e 144 µg m-2 de i.a.) do herbicida sulfentrazone na nodulação da soja (Glycine max (L.) Merrill cv. BR16) infectada com Bradyrhizobium japonicum estirpe SEMIA 5079, e na fixação de dinitrogênio, estimada pelos teores de ureídeos no exsudato do xilema. Foram quantificados, também, os teores de aminoácidos e nitrato no exsudato do xilema. O número e a matéria seca dos nódulos, as concentrações de aminoácidos, nitrato e ureídeos decresceram com o incremento na dose de sulfentrazone, tanto no estádio R3 quanto no R5 de desenvolvimento da soja.

Indução de variabilidade na cultivar de arroz Metica-1 para resistência a Pyricularia grisea

A brusone é um dos fatores limitantes da produtividade da cultivar Metica-1, no Estado do Tocantins. Objetivando obter somaclones resistentes, foi realizada a indução de calos e a regeneração de plantas a partir de panículas imaturas da cultivar Metica-1. Duzentas e oitenta plantas R2 foram submetidas a inoculação inóculo de patótipos de Pyricularia grisea, ID-14 e II-1, provenientes das cultivares Metica-1 e Cica-8, respectivamente. Enquanto todas as 280 plantas R2 de Metica-1 foram resistentes em relação ao patótipo II-1, as progênies de duas plantas R1 mostraram resistência ao patótipo ID14, indicando a indução de variação genética com relação à resistência à brusone na cultivar suscetível, nas gerações iniciais. A geração R3 foi avançada e entre 280 somaclones R4 foram selecionados 51, incluindo dois somaclones, CNAI10390 e CNAI10393, que mostraram resistência vertical no viveiro de brusone. Nas gerações avançadas de R5 e R6, estes dois somaclones apresentaram resistência no viveiro e nas inoculações com cinco isolados, provenientes das cultivares Metica-1, Cica-8 e Epagri 108, e poderão ser usados como novas fontes de resistência à brusone nos programas de melhoramento de arroz.

Symmetric periodic orbits near heteroclinic loops at infinity for a class of polynomial vector fields

For polynomial vector fields in R3, in general, it is very difficult to detect the existence of an open set of periodic orbits in their phase portraits. Here, we characterize a class of polynomial vector fields of arbitrary even degree having an open set of periodic orbits. The main two tools for proving this result are, first, the existence in the phase portrait of a symmetry with respect to a plane and, second, the existence of two symmetric heteroclinic loops.

Symmetric periodic orbits near a heteroclinic loop formed by two singular points and their invariant manifolds of dimension 1 and 2

In this paper we consider vector fields in R3 that are invariant under a suitable symmetry and that posses a “generalized heteroclinic loop” L formed by two singular points (e+ and e −) and their invariant manifolds: one of dimension 2 (a sphere minus the points e+ and e −) and one of dimension 1 (the open diameter of the sphere having endpoints e+ and e −). In particular, we analyze the dynamics of the vector field near the heteroclinic loop L by means of a convenient Poincar´e map, and we prove the existence of infinitely many symmetric periodic orbits near L. We also study two families of vector fields satisfying this dynamics. The first one is a class of quadratic polynomial vector fields in R3, and the second one is the charged rhomboidal four body problem.

Cinetina e nitrato de potássio em características agronômicas de soja

O objetivo deste trabalho foi avaliar o efeito do fitorregulador cinetina e do nitrato de potássio, aplicados via foliar na fase fenológica R3, sobre algumas características agronômicas da soja e sua produtividade em campo. Utilizaram-se cinco doses de cinetina, combinadas com quatro doses de nitrato de potássio, em esquema bi-fatorial, em delineamento de blocos ao acaso. A aplicação de nitrato de potássio não influenciou as características agronômicas avaliadas. A cinetina aumentou em até 27,4% o número de legumes fixados. O peso de 1.000 sementes e a produtividade de grãos foram aumentados em até 2,7 e 32,3%, respectivamente.

Herança da resistência ao enfezamento em milho

Os objetivos deste trabalho foram determinar a herança da resistência ao complexo de enfezamento em milho e determinar as melhores fontes de resistência entre as linhagens estudadas. Foram realizadas as análises dialélica e médias de gerações em linhagens de milho. Para a análise dialélica, foram cruzadas 12 linhagens de milho, em dialélico parcial. Para análises de médias de gerações, foram cruzadas três linhagens resistentes e quatro suscetíveis, para a obtenção das gerações F1, F2, RCP R e RCP S. Os trabalhos foram conduzidos em Jaboticabal, SP. A incidência de enfezamento foi avaliada no estádio fenológico R3. Efeitos significativos quanto à capacidade geral de combinação e capacidade específica de combinação foram obtidos, o que indicou que, no controle do caráter enfezamentos, estão envolvidos tanto os efeitos aditivos quanto os de dominância. Análises de médias de gerações mostraram a presença de poucos genes envolvidos com o controle da resistência, com predominância de efeitos aditivos, o que permite a seleção de genótipos resistentes. As linhagens L02, L03 e L05 poderão ser utilizadas como fontes de resistência, em futuras combinações híbridas.

Concurrent or Sequential Adjuvant Letrozole and Radiotherapy after Conservative Surgery for Early-stage Breast Cancer: Long-term Results of the Cohort Phase 2 Randomized Trial

Purpose/Objective(s): Letrozole radiosensitizes breast cancer cells in vitro. In clinical settings, no data exist for the combination of letrozole and radiotherapy. We assessed concurrent and sequential radiotherapy and letrozole in the adjuvant setting.Materials/Methods: The present study is registered with ClinicalTrials.gov, number NCT00208273. This Phase 2 randomized trial was undertaken in two centers in France and one in Switzerland between January 12, 2005, and February 21, 2007. One hundred fifty postmenopausal women with early-stage breast cancer were randomly assigned after conserving surgery to either concurrent radiotherapy and letrozole (n = 75) or sequential radiotherapy and letrozole (n = 75). Randomization was open label with a minimization technique, stratified by investigational centers, chemotherapy (yes vs. no), radiation boost (yes vs. no), and value of radiation-induced lymphocyte apoptosis (#16% vs. .16%). The whole breast was irradiated to a total dose of 50 Gy in 25 fractions over 5 weeks. In the case of supraclavicular and internal mammary node irradiation, the dose was 44 - 50 Gy. Letrozole was administered orally once daily at a dose of 2 - 5 mg for 5 years (beginning 3 weeks pre-radiotherapy in the concomitant group, and 3 weeks postradiotherapy in the sequential group). The primary endpoint was the occurrence of acute (during and within 6 weeks of radiotherapy) and late (within 2 years) radiation-induced Grade 2 or worse toxic effects of the skin and lung (functional pulmonary test and lung CT-scan). Analyses were by intention-to-treat. The long-term follow-up after 2 years was only performed in Montpellier (n = 121) and evaluated skin toxicity (clinical examination every 6 months), lung fibrosis (one CT-scan yearly), cosmetic outcome.Results: All patients were analyzed apart from 1 in the concurrent group who withdrew consent before any treatment.Within the first 2 years (n = 149), no lung toxicity was identified by CT scan and no modification from baseline was noted by the lung diffusion capacity test. Two patients in each group had Grade 2 or worse late effects (both radiation-induced subcutaneous fibrosis [RISF]). After 2 years (n = 121), and with a median follow-up of 50 months (38-62), 2 patients (1 in each arm) presented a Grade 3 RISF. No lung toxicity was identified by CT scan. Cosmetic results (photographies) and quality of life was good to excellent. All patients who had Grade 3 subcutaneous fibrosis had an RILA value of 16% or less, irrespective of the sequence with letrozole.Conclusions:With long-term follow-up, letrozole can be safely delivered shortly after surgery and concomitantly with radiotherapy.

Grouping sunflower genotypes for yield, oil content, and reaction to Alternaria leaf spot using GGE biplot

Abstract:The objective of this work was to evaluate the suitability of the multivariate method of principal component analysis (PCA) using the GGE biplot software for grouping sunflower genotypes for their reaction to Alternaria leaf spot disease (Alternariaster helianthi), and for their yield and oil content. Sixty-nine genotypes were evaluated for disease severity in the field, at the R3 growth stage, in seven growing seasons, in Londrina, in the state of Paraná, Brazil, using a diagrammatic scale developed for this disease. Yield and oil content were also evaluated. Data were standardized using the software Statistica, and GGE biplot was used for PCA and graphical display of data. The first two principal components explained 77.9% of the total variation. According to the polygonal biplot using the first two principal components and three response variables, the genotypes were divided into seven sectors. Genotypes located on sectors 1 and 2 showed high yield and high oil content, respectively, and those located on sector 7 showed tolerance to the disease and high yield, despite the high disease severity. The principal component analysis using GGE biplot is an efficient method for grouping sunflower genotypes based on the studied variables.

Uuteen tietojärjestelmään siirtymisen vaikutukset

Johtavana ideana on tutkia, kuinka uusi tietojärjestelmään vaikuttaa varastointiyritykseen. Muutoksia on tutkittu niin käytännön kuin tietojärjestelmätasolla. Ongelmia ja niiden ratkaisuja on tutkittu molempien osalta erikseen. Uuteen järjestelmään siirtymisessä oli kaksi eri vaihetta. Tavoitteena on myös antaa kokonaiskuva varastonhallinnasta. Ensimmäisen käyttöönoton osalta tällä tutkielmalla oli 3kolme eri tehtävää: testata, kouluttaa ja tutkia käyttöönoton onnistumista. Tästä osiosta oli tuloksena mm. vastaanottohenkilöstön SAP-R3 käyttöohje ja vastaanottohenkilöstön koulutus. Testauksen tarkoituksena oli käyttöönoton ongelmien ennaltaehkäisy. Koulutuksen tavoitteena oli kouluttaa vastaanottohenkilöstö käyttämään R3:a siltä osin kun he sitä tarvitsevat. Tämä vaihe ei edellyttänyt vielä kerääjien koulutusta, koska heitä muutokset eivät vielä koskeneet. Työnjohto koulutettiin jo etukäteen.Toisen käyttöönoton osalta tehtäviä oli kaksi: tutkia käyttöönoton onnistumista ja tutkia, jäikö käyttöönoton jäljiltä vielä ongelmia. Lisäksi tutkielman tekijä oli mukana kouluttamassa keräilijöitä. Tämä työ on myös käyttöönottoprojektin yhteenveto. Ongelmia kappaleessa on esitetty puutteita toiminnassa ja tietojärjestelmässä. Lisäksi kappaleessa on ratkaisuehdotukset näihin pulmiin. Teoria osassa kerrotaan varastonhallinnan käytännön taustalla olevat teoriat.

Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes

Genome duplications increase genetic diversity and may facilitate the evolution of gene subfunctions. Little attention, however, has focused on the evolutionary impact of lineage-specific gene loss. Here, we show that identifying lineage-specific gene loss after genome duplication is important for understanding the evolution of gene subfunctions in surviving paralogs and for improving functional connectivity among human and model organism genomes. We examine the general principles of gene loss following duplication, coupled with expression analysis of the retinaldehyde dehydrogenase Aldh1a gene family during retinoic acid signaling in eye development as a case study. Humans have three ALDH1A genes, but teleosts have just one or two. We used comparative genomics and conserved syntenies to identify loss of ohnologs (paralogs derived from genome duplication) and to clarify uncertain phylogenies. Analysis showed that Aldh1a1 and Aldh1a2 form a clade that is sister to Aldh1a3-related genes. Genome comparisons showed secondarily loss of aldh1a1 in teleosts, revealing that Aldh1a1 is not a tetrapod innovation and that aldh1a3 was recently lost in medaka, making it the first known vertebrate with a single aldh1a gene. Interestingly, results revealed asymmetric distribution of surviving ohnologs between co-orthologous teleost chromosome segments, suggesting that local genome architecture can influence ohnolog survival. We propose a model that reconstructs the chromosomal history of the Aldh1a family in the ancestral vertebrate genome, coupled with the evolution of gene functions in surviving Aldh1a ohnologs after R1, R2, and R3 genome duplications. Results provide evidence for early subfunctionalization and late subfunction-partitioning and suggest a mechanistic model based on altered regulation leading to heterochronic gene expression to explain the acquisition or modification of subfunctions by surviving ohnologs that preserve unaltered ancestral developmental programs in the face of gene loss.

Computing the diameter of Coxeter groups

This thesis addresses the problem of computing the minimal and maximal diameter of the Cayley graph of Coxeter groups. We first present and assert relevant parts of polytope theory and related Coxeter theory. After this, a method of contracting the orthogonal projections of a polytope from Rd onto R2 and R3, d ¸ 3 is presented. This method is the Equality Set Projection algorithm that requires a constant number of linearprogramming problems per facet of the projection in the absence of degeneracy. The ESP algorithm allows us to compute also projected geometric diameters of high-dimensional polytopes. A representation set of projected polytopes is presented to illustrate the methods adopted in this thesis.

Sobre a aplicabilidade da termogravimetria para a estimativa de parâmetros termoquímicos de compostos de coordenação: os elementos lantanídicos

By using thermochemical data reported for a series of chelates of the type [Ln(thd)3], thd = 2, 2, 6, 6 ­ tetramethyl- 3,5-heptanedione and Ln = La, Pr, Nd, Sm, Gd, Tb, Ho, Er, Tm and Yb, empirical correlations were found involving thermochemical parameters (e.g. dissociation enthalpy) and the thermodynamic temperatures of the beginning of thermal degradation of the chelates, t i. It is shown that t i values are of capital importance in the study of this all class of coordination compounds. Among others, the empirical equation is obtained: r3+ = (-0,013.Z + 1,36)/0,005, that relates the lanthanide cation radius (pm) with the atomic number of the element. The remarkable fact is that this equation is achieved by using thermogravimetric and calorimetric parameters. Is also shown that t i values are related with the P(M) function values, which are very close related with the energy difference, deltaE, between the lowest electronic energy level of the f n s²d¹ configuration and the lowest energy level of the f n+1s² configuration in the neutral gaseous atoms.