Testing Nelder-Mead Based Repulsion Algorithms for Multiple Roots of Nonlinear Systems via a Two-Level Factorial Design of Experiments

This paper addresses the challenging task of computing multiple roots of a system of nonlinear equations. A repulsion algorithm that invokes the Nelder-Mead (N-M) local search method and uses a penalty-type merit function based on the error function, known as 'erf', is presented. In the N-M algorithm context, different strategies are proposed to enhance the quality of the solutions and improve the overall efficiency. The main goal of this paper is to use a two-level factorial design of experiments to analyze the statistical significance of the observed differences in selected performance criteria produced when testing different strategies in the N-M based repulsion algorithm. The main goal of this paper is to use a two-level factorial design of experiments to analyze the statistical significance of the observed differences in selected performance criteria produced when testing different strategies in the N-M based repulsion algorithm.

Waste collection routing-limited multiple landfills and heterogeneous fleet

This article deals with a real-life waste collection routing problem. To efficiently plan waste collection, large municipalities may be partitioned into convenient sectors and only then can routing problems be solved in each sector. Three diverse situations are described, resulting in three different new models. In the first situation, there is a single point of waste disposal from where the vehicles depart and to where they return. The vehicle fleet comprises three types of collection vehicles. In the second, the garage does not match any of the points of disposal. The vehicle is unique and the points of disposal (landfills or transfer stations) may have limitations in terms of the number of visits per day. In the third situation, disposal points are multiple (they do not coincide with the garage), they are limited in the number of visits, and the fleet is composed of two types of vehicles. Computational results based not only on instances adapted from the literature but also on real cases are presented and analyzed. In particular, the results also show the effectiveness of combining sectorization and routing to solve waste collection problems.

High diagnostic efficiency of IgM-ELISA with the use of multiple antigen peptides (MAP1) from T. gondii ESA (SAG-1, GRA-1 and GRA-7), in acute toxoplasmosis

The main serological marker for the diagnosis of recent toxoplasmosis is the specific IgM antibody, along with IgG antibodies of low avidity. However, in some patients these antibodies may persist long after the acute/recent phase, contributing to misdiagnosis in suspected cases of toxoplasmosis. In the present study, the diagnostic efficiency of ELISA was evaluated, with the use of peptides derived from T. gondii ESA antigens, named SAG-1, GRA-1 and GRA-7. In the assay referred to, we studied each of these peptides individually, as well as in four different combinations, as Multiple Antigen Peptides (MAP), aiming to establish a reliable profile for the acute/recent toxoplasmosis with only one patient serum sample. The diagnostic performance of the assay using MAP1, with the combination of SAG-1, GRA-1 and GRA-7 peptides, demonstrated better discrimination of the acute/recent phase from non acute/recent phase of toxoplasmosis. Our results show that IgM antibodies to MAP1 may be useful as a serological marker, enhancing the diagnostic efficiency of the assay for acute/recent phase of toxoplasmosis.

Analyzing Multiple Outcomes: Is it Really Worth the use of Multivariate Linear Regression?

In health related research it is common to have multiple outcomes of interest in a single study. These outcomes are often analysed separately, ignoring the correlation between them. One would expect that a multivariate approach would be a more efficient alternative to individual analyses of each outcome. Surprisingly, this is not always the case. In this article we discuss different settings of linear models and compare the multivariate and univariate approaches. We show that for linear regression models, the estimates of the regression parameters associated with covariates that are shared across the outcomes are the same for the multivariate and univariate models while for outcome-specific covariates the multivariate model performs better in terms of efficiency.

Mobilidade funcional, risco de queda, nível de actividade física e percepção de saúde em indivíduos com 65 ou mais anos

RESUMO:O objectivo deste estudo foi analisar a relação entre mobilidade funcional, risco de queda, nível de actividade física e percepção de saúde de 34 indivíduos praticantes (n=18) e não praticantes (n=16) de exercício físico duas ou mais vezes por semana durante pelo menos 45 minutos, residentes na comunidade e ambulatórios. Tipo de estudo: transversal exploratório-descritivo. Metodologia: foi feito um levantamento das variáveis de caracterização (idade, sexo, habilitações literárias, situação sócio-económica, situação familiar) e do estado cognitivo e estado emocional/depressão (Mini-Mental State Examination e Geriatric Depression Scale). As variáveis em análise foram: a mobilidade funcional avaliada através do Timed up and GoTest, o risco de queda medido com o Funtional Reach Test, o nível de actividade física avaliado através do Questionário Internacional de Actividade Física (IPAQ) e a percepção de saúde medida através do SF-6D. Foi também questionada a prática de alguma modalidade de exercício físico, da sua frequência e duração. Os dados foram analisados através de estatística descritiva, foi realizada uma regressão linear múltipla e uma análise bivariada das correlações, utilizando o coeficiente de correlação linear de Pearson (p ≤ 0,05).Resultados: verificou-se que, na amostra global, a maioria dos indivíduos apresentou uma mobilidade funcional considerada normal (TUG<10 segundos), e um risco de queda moderado (FRT entre 15,24 e 25,40 cm), embora sem diferenças entre os grupos em análise. A actividade física apresentou uma duração média de 685,88±540,16 minutos por semana, sendo que 18 indivíduos praticavam exercício físico pelo menos 45 minutos e duas ou mais vezes por semana.A percepção do estado de saúde foi bastante satisfatória, sendo a pontuação média do SF-6D de 0,915±0,067. A análise entre grupos demonstrou que o grupo que praticava exercício físico apresentava um maior número de indivíduos na faixa etária dos 65-74 anos, tinha mais escolarização e melhor estado cognitivo. Estes indivíduos eram fisicamente mais activos e faziam-o, na sua maioria, com uma frequência bissemanal, apenas um desempenhando uma modalidade de intensidade vigorosa. A análise estatística demonstrou que: a mobilidade funcional e o risco de queda eram mais desfavoráveis nos indivíduos com mais idade; o estado cognitivo estava associado a maior mobilidade funcional; uma boa mobilidade funcional correspondeu a um risco de queda reduzido, a mais prática de actividade física, a melhor percepção do estado de saúde e a manutenção do estado cognitivo. Os indivíduos com menor risco de queda apresentaram melhor estado cognitivo e emocional. E este último correspondeu a uma melhor percepção do estado de saúde e a um melhor estado cognitivo. Conclusão: a manutenção da mobilidade funcional reduz o risco de queda aumenta a prática de actividade física e melhora a percepção de saúde de indivíduos com 65 ou mais anos residentes na comunidade.--------- ABSTRACT: Objective: the aim of this study was to analyze the relationship between functional mobility, falls risk, level of physical activity and health perception in a sample of 34 subjects, 18 that practice exercise two or more times a week for at least 45 minutes and 16 that don’t practice exercise, residents and community. Designs: cross-sectional exploratory-descriptive survey. Methods: descriptive variables are age, sex, education, socio-economic level, family status, cognitive status (Mini-Mental State Examination) and emotional status/depression (Geriatric Depression Scale). We analyze the functional mobility with the Timed up and Go Test, the falls risk with Functional Reach Test, the level of physical activity with the International Physical Activity Questionnaire (IPAQ) and health perception with SF-6D. We also questioned the practice of exercise, their frequency and duration. Data were analyzed using descriptive statistics, a multiple linear regression analysis and bivariate correlations, using the linear correlation coefficient of Pearson (p ≤ 0.05). Results: we found that, in the total sample, most individuals had considered a normal functional mobility (TUG <10 seconds), and a moderate falls risk (FRT between 15.24 and 25.40 cm), but no difference between groups. Physical activity showed an mean of 685.88 ± 540.16 minutes per week, with 18 individuals pratice physical exercise at least 45 minutes and two or more times per week. The mean score of the SF-6D was 0.915 ± 0.067 and the perception of health was satisfactory. The analysis between groups showed that the group that practice physical exercise had a greater number of individuals aged 65-74 years, had more schooling and better cognitive status. These subjects were more physically active and mostly did it two times a weak and only one playing a kind of vigorous intensity. The multiple linear regression and correlations, using the linear correlation coefficient of Pearson (p≤0.05) showed that: functional mobility and fall risk decrease with age increase. The cognitive status was associated with greater functional mobility, a good functional mobility corresponded to a reduced falls risk, more physical activity, a better perception of health status and maintenance of cognitive status. Subjects with lower falls risk had better cognitive and emotional state. And subjects with a better emotional status have a better health perception and better cognitive status. Conclusion: the maintenance of functional mobility reduces falls risk, increase physical activity and improves health perception of individuals with 65 years or older living in the community.

A filter algorithm: comparison with NLP solvers

The purpose of this work is to present an algorithm to solve nonlinear constrained optimization problems, using the filter method with the inexact restoration (IR) approach. In the IR approach two independent phases are performed in each iteration—the feasibility and the optimality phases. The first one directs the iterative process into the feasible region, i.e. finds one point with less constraints violation. The optimality phase starts from this point and its goal is to optimize the objective function into the satisfied constraints space. To evaluate the solution approximations in each iteration a scheme based on the filter method is used in both phases of the algorithm. This method replaces the merit functions that are based on penalty schemes, avoiding the related difficulties such as the penalty parameter estimation and the non-differentiability of some of them. The filter method is implemented in the context of the line search globalization technique. A set of more than two hundred AMPL test problems is solved. The algorithm developed is compared with LOQO and NPSOL software packages.

A filter inexact-restoration method for nonlinear programming

A new iterative algorithm based on the inexact-restoration (IR) approach combined with the filter strategy to solve nonlinear constrained optimization problems is presented. The high level algorithm is suggested by Gonzaga et al. (SIAM J. Optim. 14:646–669, 2003) but not yet implement—the internal algorithms are not proposed. The filter, a new concept introduced by Fletcher and Leyffer (Math. Program. Ser. A 91:239–269, 2002), replaces the merit function avoiding the penalty parameter estimation and the difficulties related to the nondifferentiability. In the IR approach two independent phases are performed in each iteration, the feasibility and the optimality phases. The line search filter is combined with the first one phase to generate a “more feasible” point, and then it is used in the optimality phase to reach an “optimal” point. Numerical experiences with a collection of AMPL problems and a performance comparison with IPOPT are provided.

A Multiple Criteria Utility-based Approa h for the Unit Commitment with Wind Power and Pumped Storage Hydro

The integration of wind power in eletricity generation brings new challenges to unit commitment due to the random nature of wind speed. For this particular optimisation problem, wind uncertainty has been handled in practice by means of conservative stochastic scenario-based optimisation models, or through additional operating reserve settings. However, generation companies may have different attitudes towards operating costs, load curtailment, or waste of wind energy, when considering the risk caused by wind power variability. Therefore, alternative and possibly more adequate approaches should be explored. This work is divided in two main parts. Firstly we survey the main formulations presented in the literature for the integration of wind power in the unit commitment problem (UCP) and present an alternative model for the wind-thermal unit commitment. We make use of the utility theory concepts to develop a multi-criteria stochastic model. The objectives considered are the minimisation of costs, load curtailment and waste of wind energy. Those are represented by individual utility functions and aggregated in a single additive utility function. This last function is adequately linearised leading to a mixed-integer linear program (MILP) model that can be tackled by general-purpose solvers in order to find the most preferred solution. In the second part we discuss the integration of pumped-storage hydro (PSH) units in the UCP with large wind penetration. Those units can provide extra flexibility by using wind energy to pump and store water in the form of potential energy that can be generated after during peak load periods. PSH units are added to the first model, yielding a MILP model with wind-hydro-thermal coordination. Results showed that the proposed methodology is able to reflect the risk profiles of decision makers for both models. By including PSH units, the results are significantly improved.

Possibilidade de desenvolvimento integrado pela expressão musical: Uma experiência no 1º CEB

Desde o primeiro momento, este projeto procurou libertar-se dos cenários tradicionais em que a aprendizagem era encarada como uma atividade solitária e individual; ao longo do processo, cada aluno encontrava-se sozinho perante a tarefa, sob olhar atento do professor (tais posturas eram próprias de uma cultura autoritária e pouco solidária na apropriação do saber). Decorrente dessa vontade de alterar formas de atuação, este projeto assentou os seus pressupostos teóricos na teoria em espiral de Bruner e na teoria das inteligências múltiplas de Gardner. Assim, o aluno é sempre encarado como um ser em desenvolvimento, razão pela qual urge ter uma visão holística e integrada desse desenvolvimento. Como tal, associada a estas teorias aparece a aprendizagem cooperativa e, consequentemente, o conceito de Zona de Desenvolvimento Proximal de Vygotsky e a integração curricular diretamente ligada à metodologia de projeto defendida por autores como Dewey e Kilpatrik, pontos basilares de todo este estudo. Tal como o próprio nome do projeto indica Possibilidades de desenvolvimento integrado pela Expressão Musical: Uma experiência no 1.º CEB, o objetivo principal é investigar as possibilidades de desenvolvimento global do aluno, com a interligação dos vários saberes que lhe permitam construir o seu conhecimento de uma forma integrada, tendo como ponto de partida a expressão musical. Desde a elaboração das planificações, passando pelas atividades desenvolvidas ao longo das aulas, houve sempre a preocupação em promover a participação ativa dos alunos e, como é evidente pelos mapas de conceitos, privilegiar a integração curricular bem como o desenvolvimento global dos alunos. Os dados obtidos através da entrevista efetuada aos alunos e do inquérito final demonstram o reconhecimento, por parte dos alunos, da expressão musical como uma mais3 valia para a sua aprendizagem nas diversas disciplinas, bem como a sua preferência pelo trabalho cooperativo.

Oral Contraceptive Use and Clinical Outcomes in Patients with Multiple Sclerosis

Experimental and clinical data suggest a role of sex steroids in the pathogenesis of multiple sclerosis (MS). Scant information is available about the potential effect of oral contraceptive (OC) use on the prognosis of the disease. We aimed to evaluate this. The study population consisted of 132 women with relapsing-remitting MS before receiving disease modifying treatment and a mean disease duration 6.2 (SD 5.1) years. Three groups of patients were distinguished according to their OC behavior: [1] never-users, patients who never used OC [2] past-users, patients who stopped OC use before disease onset, and [3] after-users, those who used these drugs after disease onset. Multiple linear and logistic regression models were used to analyze the association between oral contraceptive use and annualized relapse rates, disability accumulation and severity of the disease. After-user patients had lower Expanded Disability Status Scale (EDSS) and Multiple Sclerosis Severity Score (MSSS) values than never users (p<0.001 and p=0.002, respectively) and past users (p=0.010 and p=0.002, respectively). These patients were also more likely to have a benign disease course (MSSS<2.5) than never and past users together (OR: 4.52, 95%CI: 2.13-9.56, p<0.001). This effect remained significant after adjustment for confounders, including smoking and childbirths (OR: 2.97, 95%CI: 1.24, 6.54, p=0.011 and for MSSS β: -1.04; 95% C.I. -1.78, -0.30, p=0.006). These results suggest that OC use in women with relapsing-remitting MS is possible associated with a milder disabling disease course.

Strategies of the African swine fever virus to manipulate innate immunity

Dissertation presented to obtain the Ph.D degree in Biology

Histoplasmosis presenting with multiple pulmonary nodules. A case mimicking radiological features of pulmonary metastasis

We present a case of histoplasmosis with multiple pulmonary nodules in a patient with a history of melanoma. This case closely simulated malignancy, including the presence of feeding vessel sign, which occurs in pulmonary metastasis. We emphasize the need to be aware of this infection in areas where histoplasmosis is endemic.

Articulação de várias linguagens de programação/tecnologias no desenvolvimento aplicacional

O desenvolvimento aplicacional é uma área em grande expansão no mercado das tecnologias de informação e como tal, é uma área que evolui rápido. Os impulsionadores para esta característica são as comunicações e os equipamentos informáticos, pois detêm características mais robustas e são cada vez mais rápidos. A função das aplicações é acompanhar esta evolução, possuindo arquiteturas mais complexas/completas visando suportar todos os pedidos dos clientes, através da produção de respostas em tempos aceitáveis. Esta dissertação aborda várias arquiteturas aplicacionais possíveis de implementar, mediante o contexto que esteja inserida, como por exemplo, um cenário com poucos ou muitos clientes, pouco ou muito capital para investir em servidores, etc. É fornecido um nivelamento acerca dos conceitos subjacentes ao desenvolvimento aplicacional. Posteriormente é analisado o estado de arte das linguagens de programação web e orientadas a objetos, bases de dados, frameworks em JavaScript, arquiteturas aplicacionais e, por fim, as abordagens para definir objetivos mensuráveis no desenvolvimento aplicacional. Foram implementados dois protótipos. Um deles, numa arquitetura multicamada com várias linguagens de programação e tecnologias. O segundo, numa única camada (monolítica) com uma única linguagem de programação. Os dois protótipos foram testados e comparados com o intuito de escolher uma das arquiteturas, num determinado cenário de utilização.

Linear amplification with multiple nonlinear devices

Dissertação para obtenção do Grau de Mestre em Engenharia Electrotécnica e Computadores