The use of fluorescent probes to assess viability of the plant pathogenic bacterium Clavibacter michiganensis subsp. michiganensis by flow cytometry

Determination of the viability of bacteria by the conventional plating technique is a time-consuming process. Methods based on enzyme activity or membrane integrity are much faster and may be good alternatives. Assessment of the viability of suspensions of the plant pathogenic bacterium Clavibacter michiganensis subsp. michiganensis (Cmm) using the fluorescent probes Calcein acetoxy methyl ester (Calcein AM), carboxyfluorescein diacetate (cFDA), and propidium iodide (PI) in combination with flow cytometry was evaluated. Heat-treated and viable (non-treated) Cmm cells labeled with Calcein AM, cFDA, PI, or combinations of Calcein AM and cFDA with PI, could be distinguished based on their fluorescence intensity in flow cytometry analysis. Non-treated cells showed relatively high green fluorescence levels due to staining with either Calcein AM or cFDA, whereas damaged cells (heat-treated) showed high red fluorescence levels due to staining with PI. Flow cytometry also allowed a rapid quantification of viable Cmm cells labeled with Calcein AM or cFDA and heat-treated cells labeled with PI. Therefore, the application of flow cytometry in combination with fluorescent probes appears to be a promising technique for assessing viability of Cmm cells when cells are labeled with Calcein AM or the combination of Calcein AM with PI.

Biokaasulaitoksen energiatalouden tarkastelu

Biokaasulaitosala ja tuotosten hyötykäyttömarkkinat kasvavat ja kehittyvät tiukentuneiden ilmastotavoitteiden, liikenteen biopolttoaineiden lisäämisvelvoitteiden sekä jätehuoltoratkaisujen uusiutumisen myötä. Tässä työssä tarkasteltiin biokaasulaitoksen toimintaa, energiataloudellisuutta sekä biokaasulaitoksen talouteen vaikuttavia tekijöitä, kuten porttimaksuja ja toiminnan mahdollistavaa logistiikkaa. Lisäksi työssä on laskettu biokaasun hyötykäytöstä aiheutuvat päästövähenemät, kun biokaasulla korvataan fossiilisia polttoaineita sähkön- ja lämmöntuotannossa tai perinteisiä liikennepolttoaineita. Työn keskeisemmät tulokset osoittivat, että biokaasulaitoksen energiatase on positiivinen, biokaasulaitosprosessin kuluttaessa noin 40 %:a biokaasulaitoksen kokonaisenergiantuotosta, kun kuljetuksia ei huomioida. Kuljetuksien kuluttama energiaosuus vastaa noin 20 %:a biokaasulaitoksen tuottamasta energiasta. Biokaasun hyötykäytöstä aiheutuvat vuosittaiset päästövähenemät vaihtelivat tarkastelluissa tapauksissa 6 600-7 800 tCO2-ekv välillä hyötykäyttömuodosta riippuen. Työn tulokset auttavat Biovakka Suomi Oy:tä tulevissa päätöksentekovaiheissa sekä investointikysymyksissä.

Flow injection visible diffuse reflectance quantitative analysis of total sulfur in biodiesel, in plant leaves and in natural waters

Flow injection (FI) methodology, using diffuse reflectance in the visible region of the spectrum, for the analysis of total sulfur in the form of sulfate, precipitated in the form of barium sulfate, is presented. The method was applied to biodiesel, to plant leaves and to natural waters analysis. The analytical signal (S) correlates linearly with sulfate concentration (C) between 20 and 120 ppm, through the equation S=-1.138+0.0934 C (r = 0.9993). The experimentally observed limit of detection is about 10 ppm. The mean R.S.D. is about 3.0 %. Real samples containing sulfate were analyzed and the results obtained by the FI and by the reference batch turbidimetric method using the statistical Student's t-test and F-test were compared.

White mold intensity on common bean in response to plant density, irrigation frequency, grass mulching, Trichoderma spp., and fungicide

The purpose of this study was to evaluate the efficiency of integrated managements on white mold control on common bean. Initially, in vitro testing was made to assess the antagonism of 11 Trichoderma isolates against Sclerotinia sclerotiorum and to investigate fungicides (fluazinam and procymidone) inhibitory effects on those fungi. In two field experiments the following combinations were tested: irrigation frequencies (seven or 14 days), plant densities (six or 12 plants per meter), and three disease controls (untreated control, fungicide or Trichoderma spp.). In a third experiment plant densities were replaced by grass mulching treatments (with or without mulching). Fluazinam was applied at 45 and 55 days after emergence (DAE). The antagonists T. harzianum (experiments 1 and 3) and T. stromatica (experiment 2) were applied through sprinkler irrigation at 10 and 25 DAE, respectively. Most of the Trichoderma spp. were effective against the pathogen in vitro. Fluazinam was more toxic than procymidone to both the pathogen and the antagonist. Fungicide applications increased yield between 32 % and 41 %. In field one application of Trichoderma spp. did not reduce disease intensity and did not increase yield. The reduction from 12 to six plants per meter did not decrease yield, and disease severity diminished in one of the two experiments. It is concluded that of the strategies for white mold control just reduction of plant density and applications of fungicide were efficient.

Induction of plant defense responses by Ocimum gratissimum L. (Lamiaceae) leaf extracts

Aqueous extracts of the leaves of Ocimum gratissimum at 10, 25, 40 and 50% (w/v) concentrations induced the production of phytoalexins in soybean cotyledons and sorghum mesocotyls. The aqueous extracts also induced systemic resistance in cucumber to Colletotrichum lagenarium, reflected by reduction in disease incidence and an increase in chitinase production. Modes of action and the existence of possible elicitors of defense response in O. gratissimum leaf extracts are discussed.

Eucalyptus ESTs involved in mechanisms against plant pathogens and environmental stresses

Eucalypt plantation has high economical importance in Brazil; however, it has been attacked by various pathogens under different environmental stress conditions. Disease resistance and survival under unfavorable environmental conditions have revealed that the eucalypt has developed highly efficient defense systems. Here we show the results of the Eucalyptus ESTs Genome Project (FORESTs). Using the expressed sequence tags (ESTs) obtained by the Project, contigs of similar sequences from each cDNA library induced and not induced by stress agents were formed, and cDNA sequences similar to other already known molecules, such as plant-signaling molecules, phytoalexins, lignin biosynthesis pathways, PR-proteins and putative genes corresponding to enzymes involved in the detoxification of reactive oxygen species, were identified. We also present general considerations about the mechanisms of Eucalyptus defense against biotic and abiotic stresses. These data are of extreme importance for future eucalypt breeding programs aimed at developing plants with enhanced resistance against pathogens and environmental stresses.

Nematicidal effect of volatile organic compounds (VOCs) on the plant-parasitic nematode Meloidogyne javanica

Previous studies have demonstrated that volatile organic compounds (VOCs), produced by the yeast Saccharomyces cerevisiae, were able to inhibit the development of phytopathogenic fungi. In this context, the nematicidal potential of the synthetic mixture of VOCs, constituted of alcohols and esters, was evaluated for the control of the root-knot nematode Meloidogyne javanica, which causes losses to crops of high economic value. The fumigation of substrate containing second-stage juveniles with VOCs exhibited nematicidal effect higher than 30% for the lowest concentration tested (33.3 µL g-1 substrate), whereas at 66.6 and 133.3 µL g-1 substrate, the nematode mortality was 100%. The present results stimulate other studies on VOCs for nematode management.

Sähkön ja lämmön yhteistuotanto haasteellisilla polttoaineilla

Maailman energian kulutuksen lisääntymisen ja ilmastonmuutoksen myötä energiantuotannossa joudutaan jatkuvasti sopeutumaan muuttuviin tilanteisiin ja haasteisiin. Polttoteknillisiä haasteita aiheuttavat pelto- ja kierrätyspolttoaineet ovat lisäämässä osuuttaan uusiutuvien polttoaineiden joukossa. Jotta kyseisiä haasteellisia polttoaineita pystytään hyödyntämään, täytyy niiden aiheuttamat ongelmat tuntea ja laitevalmistajien kehittää niiden hyödyntämiseen sopivaa tekniikkaa. Tässä diplomityössä käydään läpi tulevaisuudessa käytettävät polttoaineet, nykyiset päästörajat, kiinteiden polttoaineiden poltto- ja kaasutustekniikat sekä likaantumis-, kuonaantumis- ja korroosiomekanismit voimalaitoskattiloissa. Työssä tutkitaan, onko haasteellisten polttoaineiden käyttöön investoiminen järkevää ja mikä nykypäivän tekniikoista on kannattavin. Myös välitulistuksen, lauhdeperän ja apujäähdyttimen kannattavuuksia vertaillaan sähkön ja lämmön yhteistuotannossa. Tuloksiksi saatiin, että edullisten peltobiomassojen ja kierrätyspolttoaineiden käyttäminen, joko perinteisten polttoaineiden seassa tai pääpolttoaineena, on nykyhinnoilla perinteisiin polttoaineisiin verrattuna kannattavaa. Investoiminen kierrätyspolttoaineiden valmistuslaitteisiin maksimoi kierrätyspolttoaineista saatavaa hyötyä. Välitulistuksen todettiin soveltuvan huonosti vastapaineprosessiin, sillä siitä saatava sähköntuotannon lisäys on hyvin pieni. Lauhdeperän ja apujäähdyttimen vertailuissa huomattiin, että lauhdeperä on kannattava investointi, jos sähkön ja lämmön hintaero pysyy tarpeeksi suurena. Haasteellisilla polttoaineilla pystytään pienentämään kasvihuonepäästöjä ja korvaamaan fossiilisten polttoaineiden käyttöä.

Economics of combined power plant and pyrolysis bio-oil production

There are reasons of necessity in bio-fuel use and bio-energy fast development. It includes the material about bio-energy technologies, applications and methods. There are basic thermodynamics and economic theories. The economic calculation presents the comparison between two combinations. There are boiler plant below 20 MW in combination with ablative pyrolysis plant for bio-oil production and CHP plant below 100 MW in combination with the RTP pyrolysis bio-oil production technology. It provides a material about wood chips and bio-oil characteristics and explains it nature, presents the situation around the bio-fuel market or bio-fuel trade. There is a description of pyrolysis technologies such as ablative and RTP. The liquid product of the pyrolysis processes is bio-oil. The bio-oil could be different even of the same production process, because of the raw material nature and characteristics. The calculation shows advantages and weaknesses of combinations and obtained a proof of suppositions. The next thing, proven by this work is the fact that to get more efficiency from energy project it is good possibility to built plants in combinations.

Effect of light intensity and growth substratum on plant development and production of secondary metabolites in Cordia curassavica (Jacq.) Roem. & Schult

Cordia curassavica (Jacq.) Roem. & Schult. (Boraginaceae), also referred to as Cordia verbenacea DC, has been traditionally used for medicinal purposes. This study was driven to verify the behavior of the species in similar conditions to its natural environment, such as high light intensity and sandbank soil, and in conditions of low light intensity and fertilized substratum (dystroferric red nitosoil plus earthworm humus). The growth of the plant, the income of leaf crude extracts and, in the alcoholic extract, the number of substances found in thin layer cromatography and the toxicity of the substratum was observed. The results indicated that the growth of the root biomass, stem and leaves in discharge or lower light intensity was similar, but smaller in sandbank soil than in fertilized soil. The relative income of extracts in ether of petroleum and alcohol was larger in high light intensity and fertilized substratum. The light intensity and the substratum type didn't affect the number of substances detected in the alcoholic extract or the toxicity of this extract. Stains corresponding to the rosmarinic acid were only evidenced in some samples of the alcoholic extract, not allowing the verification of the effect of the treatments about its production.

Effects of global climate changes on geographical distribution patterns of economically important plant species in cerrado

Different climate models, modeling methods and carbon emission scenarios were used in this paper to evaluate the effects of future climate changes on geographical distribution of species of economic and cultural importance across the Cerrado biome. As the results of several studies have shown, there are still many uncertainties associated with these projections, although bioclimatic models are still widely used and effective method to evaluate the consequences for biodiversity of these climate changes. In this article, it was found that 90% of these uncertainties are related to methods of modeling, although, regardless of the uncertainties, the results revealed that the studied species will reduce about 78% of their geographic distribution in Cerrado. For an effective work on the conservation of these species, many studies still need to be carried out, although it is already possible to observe that climate change will have a strong influence on the pattern of distribution of these species.

Does the edge effect influence plant community structure in a tropical dry forest?

Edge effects are considered a key factor in regulating the structure of plant communities in different ecosystems. However, regardless to few studies, edge influence does not seem to be decisive in semiarid regions such as the Brazilian tropical dry forest known as Caatinga but this issue remains inconclusive. The present study tests the null hypothesis that the plant community of shrubs and trees does not change in its structure due to edge effects. Twenty-four plots (20 x 20 m) were set up in a fragment of Caatinga, in which 12 plots were in the forest edges and 12 plots were inside the fragment. Tree richness, abundance and species composition did not differ between edge and interior plots. The results of this study are in agreement with the pattern previously found for semiarid environments and contrasts with previous results obtained in different environments such as Rainforests, Savanna and Forest of Araucaria, which indicate abrupt differences between the border and interior of the plant communities in these ecosystems, and suggest that the community of woody plants of the Caatinga is not ecologically affected by the presence of edges.

Thinning effect on plant growth of pruned eucalypt clone

A pruned stand of eucalypt clone underwent five thinning treatments with the removal of different proportion of the planted trees, at different ages: a) 0% - unthinned, b) 35% at 55 months, c) 35% at 81 months, d) 70% at 81 months, removing sprouts in the thinned plant stumps and, e) 70% at 81 months, without coppice sprouts removal. By the age of 141 months, the Weibull distribution showed higher number of trees in the smallest diameter classes for the unthinned treatment. The 70% thinning, with thinned coppice sprouts removal, presented higher number of individuals in the largest diameter classes. Height and yield were the smallest with the removal of 70% of the trees at 81 months, maintaining coppice sprouts. The afterthinning periodic annual increment was greater by thinning 35% of the trees at 55 months resulting in greater number of trees in the largest diameter classes as compared to the other treatments. Yield was higher for the unthinned treatment. The results of this study indicated that thinning 70% of the trees at the age of 81 months, with coppice sprout removal, could be recommended to obtain trees of larger diameter for multiproduct.