Improved sampling for gradient-domain metropolis light transport

We present a generalized framework for gradient-domain Metropolis rendering, and introduce three techniques to reduce sampling artifacts and variance. The first one is a heuristic weighting strategy that combines several sampling techniques to avoid outliers. The second one is an improved mapping to generate offset paths required for computing gradients. Here we leverage the properties of manifold walks in path space to cancel out singularities. Finally, the third technique introduces generalized screen space gradient kernels. This approach aligns the gradient kernels with image structures such as texture edges and geometric discontinuities to obtain sparser gradients than with the conventional gradient kernel. We implement our framework on top of an existing Metropolis sampler, and we demonstrate significant improvements in visual and numerical quality of our results compared to previous work.

Placental Uric Acid Transport System: Glucose Transporter 9 (SLC2A9)

Placental Uric Acid Transport System: Glucose Transporter 9 (SLC2A9). INTRODUCTION: Pre-eclampsia, a pregnancy-specific disease, contributes substantially to perinatal morbidity and mortality of both the mother and her child. Pre-eclampsia is often associated with high maternal urate serum levels, which in turn has been shown to play a role in the pathogenesis of this disease. The aim of this study was to investigate the glucose transporter GLUT9-mediated placental uric acid transport system. METHODS: In this study western blot, immunofluorescence techniques as well as a transepithelial transport (Transwell) model were used to assess GLUT9 protein expression and, respectively, uric acid transport activity. Electrophysiological techniques and transmission electron microscopy (TEM) were used to characterize the properties and the structure of GLUT9. RESULTS: Uric acid is transported across a BeWo choriocarcinoma cell monolayer with 530 pmol/min. We could successfully overexpress and for the first time purify the GLUT9b isoform using the Xenopus laevis oocytes expression system. Chloride seems to modulate the urate transport system. TEM revealed that GLUT9b isoform is present as monomer and dimmer in the Xenopus laevis overexpression model. A class average of all the particles allowed us to develop a first model of human GLUT9b structure, which was derived from the published crystal structure of the bacterial homologue of GLUT1-4. CONCLUSIONS: In vitro the “materno-fetal” transport of uric acid is slow indicating that in vivo the fetus might be protected from short-term fluctuations of maternal urate serum levels. The low-resolution structure obtained from TEM validates the proposed homology model regarding the structure of human GLUT9b. In ongoing studies this model is used to perform virtual screening to identify novel modulators of the urate transport system enabling the development of novel therapies in pregnancy complications.

Supramolecular Organization of Dye Molecules in Zeolite L Channels: Synthesis, Properties, and Composite Materials

Sequential insertion of different dyes into the 1D channels of zeolite L (ZL) leads to supramolecular sandwich structures and allows the formation of sophisticated antenna composites for light harvesting, transport, and trapping. The synthesis and properties of dye molecules, host materials, composites, and composites embedded in polymer matrices, including two- and three-color antenna systems, are described. Perylene diimide (PDI) dyes are an important class of chromophores and are of great interest for the synthesis of artificial antenna systems. They are especially well suited to advancing our understanding of the structure–transport relationship in ZL because their core fits tightly through the 12-ring channel opening. The substituents at both ends of the PDIs can be varied to a large extent without influencing their electronic absorption and fluorescence spectra. The intercalation/insertion of 17 PDIs, 2 terrylenes, and 1 quaterrylene into ZL are compared and their interactions with the inner surface of the ZL nanochannels discussed. ZL crystals of about 500 nm in size have been used because they meet the criteria that must be respected for the preparation of antenna composites for light harvesting, transport, and trapping. The photostability of dyes is considerably improved by inserting them into the ZL channels because the guests are protected by being confined. Plugging the channel entrances, so that the guests cannot escape into the environment is a prerequisite for achieving long-term stability of composites embedded in an organic matrix. Successful methods to achieve this goal are described. Finally, the embedding of dye–ZL composites in polymer matrices, while maintaining optical transparency, is reported. These results facilitate the rational design of advanced dye–zeolite composite materials and provide powerful tools for further developing and understanding artificial antenna systems, which are among the most fascinating subjects of current photochemistry and photophysics.

INHIBITION OF THE MITOCHONDRIAL RESPIRATION OF TUMOR CELLS BY SOLUBLE FACTORS RELEASED BY ACTIVATED MACROPHAGES (CYTOTOXICITY, ELECTRON TRANSPORT, MONOCYTE)

Particular interest has been directed towards the macrophage as a primary antineoplastic cell due to its tumoricidal properties in vitro and the observation that an inverse relationship exists between the number of macrophages infiltrating a tumor and metastatic potential. The mechanism of macrophage-mediated injury of tumor cells remains unknown. Recently, it has been shown that injured tumor cells have defective mitochondrial respiration. Our studies have shown that activated macrophages can release soluble factors which can alter tumor cell respiration.^ The effects of a conditioned supernatant (CS) from cultures of activated macrophages on tumor cell (TC) mitochondrial respiration was studied. CS was obtained by incubation of BCG-elicited, murine peritoneal macrophage with RPMI-1640 supplemented with 10% FCS and 50 ng/ml bacterial endotoxin. This CS was used to treat cultures of EMT-6 TC for 24 hours. Mitochondrial respiration was measured polarigraphically using a Clark-type oxygen electrode. Cell growth rate was assessed by ('3)H-Thymidine incorporation. Exposure of EMT-6 TC to CS resulted in the inhibition of malate and succinate oxidation 76.6% and 72.9%, respectively. While cytochrome oxidase activity was decreased 61.1%. This inhibition was accompanied by a 98.8% inhibition of DNA synthesis (('3)H-Thymidine incorporation). Inhibition was dose-related with a 21.3% inhibition of succinate oxidase from a 0.3 ml dose of CS and a 50% inhibition with 1.0 mls. Chromatography of CS on Sephacryl S-200 resulted in isolation of an 80,000 and a 55,000 dalton component which contained the respiration inhibiting activity (RIF). These factors were distinct from a 120,000 dalton cytolytic factor determined by bioassay on Actinomycin-D treated L929 cells. RIF activity was also distinct from several other cytostatic factors but was itself associated with 2 peaks of cytostatic activity. Characterization of the RIF activity showed that it was destroyed by trypsin and heat (100(DEGREES)C, 5 min). It was stable over a broad range of pH (4-9) and its production was inhibited by cycloheximide. The RIF did not have a direct effect on isolated mitochondria of TC nor did it induce the formation of a stable intracellular toxin for mitochondria.^ In conclusion, activated macrophages synthesize and secrete an 80,000 and a 55,000 dalton protein which inhibits the mitochondrial metabolism of TC. These factors induce a cytostatic but not a cytolytic effect on TC.^ The macrophage plays a role in the control of normal and tumor cell growth and in tissue involution. Inhibition of respiration may be one mechanism used by macrophages to control cell growth.^

Physical properties of 39 sediment cores from the Bengal Fan and northeast Indian Ocean

We obtained sediment physical properties and geochemical data from 47 piston and gravity cores located in the Bay of Bengal, to study the complex history of the Late Pleistocene run-off from the Ganges and Brahmaputra rivers and its imprint on the Bengal Fan. Grain-size parameters were predicted from core logs of density and velocity to infer sediment transport energy and to distinguish different environments along the 3000-km-long transport path from the delta platform to the lower fan. On the shelf, 27 cores indicate rapidly prograding delta foresets today that contain primarily mud, whereas outer shelf sediment has 25% higher silt contents, indicative of stronger and more stable transport regime, which prevent deposition and expose a Late Pleistocene relic surface. Deposition is currently directed towards the shelf canyon 'Swatch of No Ground', where turbidites are released to the only channel-levee system that is active on the fan during the Holocene. Active growth of the channel-levee system occurred throughout sea-level rise and highstand with a distinct growth phase at the end of the Younger Dryas. Coarse-grained material bypasses the upper fan and upper parts of the middle fan, where particle flow is enhanced as a result of flow-restriction in well-defined channels. Sandier material is deposited mainly as sheet-flow deposits on turbidite-dominated plains at the lower fan. The currently most active part of the fan with 10-40 cm thick turbidites is documented for the central channel including inner levees (e.g., site 40). Site 47 from the lower fan far to the east of the active channel-levee system indicates the end of turbidite sedimentation at 300 ka for that location. That time corresponds to the sea-level lowering during late isotopic stage 9 when sediment supply to the fan increased and led to channel avulsion farther upstream, probably indicating a close relation of climate variability and fan activity. Pelagic deep-sea sites 22 and 28 contain a 630-kyear record of climate response to orbital forcing with dominant 21- and 41-kyear cycles for carbonate and magnetic susceptibility, respectively, pointing to teleconnections of low-latitude monsoonal forcing on the precession band to high-latitude obliquity forcing. Upper slope sites 115, 124, and 126 contain a record of the response to high-frequency climate change in the Dansgaard-Oeschger bands during the last glacial cycle with shared frequencies between 0.75 and 2.5 kyear. Correlation of highs in Bengal Fan physical properties to lows in the d18O record of the GISP2 ice-core suggests that times of greater sediment transport energy in the Bay of Bengal are associated with cooler air temperatures over Greenland. Teleconnections were probably established through moisture and other greenhouse-gas forcing that could have been initiated by instabilities in the methane hydrate reservoir in the oceans.

Sediment physicochemical properties condition pollutant association : a multivariate study of polybrominated diphenyl ethers on the Mendoza River irrigation areas

This work is a multidisciplinary environmental study that provides new insights into the relationships between sediment-organic matter characteristics and polybrominated diphenyl ethers (PBDEs) concentration. The aim of the present multivariate study was to correlate factors influencing PBDEs accumulation in sediment by using principal component analysis (PCA). Organic matter studies by Fourier Transform-Infrared spectroscopy and physicochemical analyses (Total Organic Carbon, pH, electrical conductivity) of sediment samples were considered for PCA. Samples were collected from an artificial irrigation network on the Mendoza River irrigation areas. PCA provided a comprehensive analysis of the studied variables, identifying two components that explained 63% of the data variance. Those factors were mainly associated to organic matter degradation degree, which represent a new insight into the relationships between organic matter in sediments and PBDEs fate. In this sense it was possible to determine that not only the content but also the type of organic matter (chemical structure) could be relevant when evaluating PBDEs accumulation and transport in the environment. Typification of organic matter may be a useful tool to predict more feasible areas where PBDE, may accumulate, as well as sediment transportation capability.

Grain entrainment and transport rates of magnetic minerals of coastal sediment samples from the Bay of Plenty, New Zealand

Heavy (magnetic & non-magnetic) minerals are found concentrated by natural processes in many fluvial, estuarine, coastal and shelf environments with a potential to form economic placer deposits. Understanding the processes of heavy mineral transport and enrichment is prerequisite to interpret sediment magnetic properties in terms of hydro- and sediment dynamics. In this study, we combine rock magnetic and sedimentological laboratory measurements with numerical 3D discrete element models to investigate differential grain entrainment and transport rates of magnetic minerals in a range of coastal environments (riverbed, mouth, estuary, beach and near-shore). We analyzed grain-size distributions of representative bulk samples and their magnetic mineral fractions to relate grain-size modes to respective transport modes (traction, saltation, suspension). Rock magnetic measurements showed that distribution shapes, population sizes and grain-size offsets of bulk and magnetic mineral fractions hold information on the transport conditions and enrichment process in each depositional environment. A downstream decrease in magnetite grain size and an increase in magnetite concentration was observed from riverine source to marine sink environments. Lower flow velocities permit differential settling of light and heavy mineral grains creating heavy mineral enriched zones in estuary settings, while lighter minerals are washed out further into the sea. Numerical model results showed that higher heavy mineral concentrations in the bed increased the erosion rate and enhancing heavy mineral enrichment. In beach environments where sediments contained light and heavy mineral grains of equivalent grain sizes, the bed was found to be more stable with negligible amount of erosion compared to other bed compositions. Heavy mineral transport rates calculated for four different bed compositions showed that increasing heavy mineral content in the bed decreased the transport rate. There is always a lag in transport between light and heavy minerals which increases with higher heavy mineral concentration in all tested bed compositions. The results of laboratory experiments were validated by numerical models and showed good agreement. We demonstrate that the presented approach bears the potential to investigate heavy mineral enrichment processes in a wide range of sedimentary settings.

Geotechnical properties of sediments at DSDP Leg 84 Holes

The geotechnical characteristics of 22 sediment samples from Leg 84 sites were studied in an effort to associate these with processes active along the Middle America slope and with sedimentation mechanisms. Geotechnical properties measured include water content, porosity, bulk density, Atterberg limits, consolidation characteristics, permeability, and vane shear strength. A majority of samples obtained from Sites 565, 568, and 570 show significant disturbance resulting from degassing. This disturbance apparently results in underconsolidation, although other mechanisms such as excess pore pressures generated from the subduction process can also contribute to this state. Overconsolidated sediments were found at Sites 565, 566, and 569. The overconsolidated sediments at Sites 565 and 569 may result from downslope transport mechanisms rearranging and stressing the sediment mass under consideration. The sediment condition at Site 566 is probably a result of eroded overburden: an estimated 87 m of overlying sediments may have been removed. Geotechnical and permeability relationships with depth are consistent with those found for other hemipelagic sediments of silty clay to clayey silt textures.

(Table 1) Mean sea-ice properties from moored upward looking sonars along the Greenwich meridian

Sea-ice ocean interaction processes are of significant influence on the water mass formation in the Weddell gyre. On the basis of data obtained between 1984 and 2008 from eight repeat hydrographic sections, moored instruments and profiling floats in the Weddell gyre on the Greenwich meridian - almost all of them collected with R.V. Polarstern - we identified variations in the properties of the Winter Water and the sea ice draft. In the Winter Water the salinity was relatively low throughout the 1990s (with a minimum in 1992) and a maximum was observed in 2003. Observations of sea ice draft by moored upward looking sonars are available from 1996 onwards. In the southern part of the transect they display variations on a decadal time scale with a minimum in sea-ice thickness in 1998 and an increase since then. Salinity variations in the Winter Water layer cannot be explained only by variations in sea-ice formation and variable entrainment of underlying Warm Deep Water, but lateral advection of water and sea ice needs to be taken into account as well. Potential sources are melt water from the ice shelves in the western Weddell Sea or transport of water of low salinity entering the Weddell gyre from the east. Accompanying variations of the properties of Warm Deep Water are discussed in detail in a companion paper (Fahrbach et al., 2011, doi:10.1016/j.dsr2.2011.06.007).

Physical properties and geochemical pore-water analysis of sediment core GeoB16423-1

Several studies indicate that the 2011 Tohoku-Oki earthquake (Mw 9.0) off the Pacific coast of Japan has induced slip to the trench and triggered landslides in the Japan Trench. In order to better understand these processes, detailed mapping and shallow-coring landslides at the trench as well as Integrated Ocean Drilling Program (IODP) deep drilling to recover the plate boundary décollement (Japan Trench Fast Earthquake Drilling Project, JFAST) have been conducted. In this study we report sediment core data from the rapid response R/V SONNE cruise (SO219A) to the Japan Trench, evidencing a Mass Transport Deposit (MTD) in the uppermost section later drilled at this JFAST-site during IODP Expedition 343. A 8.7 m long gravity core (GeoB16423-1) recovered from ~7,000 m water depth reveals a 8 m sequence of semi-consolidated mud clast breccias embedded in a distorted chaotic sediment matrix. The MTD is covered by a thin veneer of 50 cm hemipelagic, bioturbated diatomaceous mud. This stratigraphic boundary can be clearly distinguished by using physical properties data from Multi Sensor Core Logging and from fall-cone penetrometer shear strength measurements. The geochemical analysis of the pore-water shows undisturbed linear profiles measured from the seafloor downcore across the stratigraphic contact between overlying younger background-sediment and MTD below. This indicates that the investigated section has not been affected by a recent sediment destabilization in the course of the giant Tohoku-Oki earthquake event. Instead, we report an older landslide which occurred between 700 and 10,000 years ago, implying that submarine mass movements are dominant processes along the Japan Trench. However, they occur on local sites and not during each megathrust earthquake.

Magnetic properties and sand composition at DSDP Site 87-582 and Hole 87-583D

At Site 582, DSDP Leg 87, turbidites about 560 m thick were recovered from the floor of the Nankai Trough. A turbidite bed is typically composed of three subdivisions: a lower graded sand unit, an upper massive silt unit, and an uppermost Chondrites burrowed silt unit. The turbidites intercalate with bluish gray hemipelagic mud which apparently accumulated below the calcite compensation depth. In order to investigate the nature and provenance of the turbidites, we studied the grain orientation, based on magnetic fabric measurements and thin-section grain counting, and grain size, using a photo-extinction settling tube and detrital modal analysis. The following results were obtained: (1) grain orientation analysis indicates that the turbidity current transport parallels the trench axis, predominantly from the northeast; (2) Nankai Trough turbidites generally decrease in grain size to the southwest; (3) turbidite sands include skeletal remains indicative of fresh-water and shallow-marine environments; and (4) turbidites contain abundant volcanic components, and their composition is analogous to the sediments of the Fuji River-Suruga Bay area. Considering other evidence, such as physiography and geometry of trench fill, we conclude that the turbidites of Site 582 as well as Site 583 were derived predominantly from the mouth of Fuji River and were transported through the Suruga Trough to the Nankai Trough, a distance of some 700 km. This turbidite transport system has tectonic implications: (1) the filling of the Nankai Trough is the direct consequence of the Izu collision in Pliocene- Pleistocene times; (2) the accretion of trench fill at the trench inner slope observed in the Nankai Trough is controlled by collision tectonics; and (3) each event of turbidite deposition may be related to a Tokai mega-earthquake.