Genetic structure of red-handed howler monkey populations in the fragmented landscape of Eastern Brazilian Amazonia

We genotyped 15 microsatellite loci in order to evaluate the effects of habitat fragmentation, caused by flooding of the Tucuruí reservoir, on the genetic structure of Alouatta belzebul in eastern Amazonia. The analysis included two populations sampled in 1984, representing both margins of the Tocantins river, and three populations sampled 18 years later. Minimal differences in the diversity levels between present-day (Ho = 0.62-0.69 and AR = 6.07-7.21) and pre-flooding (Ho = 0.60-0.62 and AR = 6.27-6.77) populations indicated there was no significant loss of genetic variability, possibly because of successful management strategies applied during the flooding. The changes observed were limited to shifts in the composition of alleles, which presumably reflect the admixture of subpopulations during flooding. Given this, there were significant differences in the Rst values (p = 0.05) in all but one between-site comparison. Both present-day and original populations showed a deficit of heterozygotes, which suggests that this may be typical of the species, at least at a local level, perhaps because of specific ecological characteristics. The relatively large number of private alleles recorded in all populations may be a consequence of the Wahlund effect resulting from population admixture or a process of expansion rather than the loss of rare alleles through genetic drift. Additionally, the levels of genetic variability observed in this study were higher than those reported for other species of Neotropical primates, suggesting good fitness levels in these A. belzebul populations. Regular genetic monitoring of remnant populations, especially on islands, should nevertheless be an integral component of long-term management strategies.

Feeding ecology of Auchenipterichthys longimanus (Siluriformes: Auchenipteridae) in a riparian flooded forest of Eastern Amazonia, Brazil

Neste estudo foram investigados os hábitos alimentares do bagre Auchenipterichthys longimanus coletados em rios da Floresta Nacional de Caxiuanã (Amazônia Oriental, Brasil) ao longo de diferentes períodos hidrológicos (seco, enchendo, cheio e vazando). Foram coletados 589 espécimes durante sete amostragens, entre julho de 2008 e julho de 2009, dos quais 74eram machos jovens, 177 machos adultos, 89 fêmeas jovens e 249 fêmeas adultas. A composição da dieta, analisada pelo Índice de Importância Alimentar (IAi%) foi avaliada por um escalonamento multidimensional não-métrico (nMDS) e pela análise de similaridade (ANOSIM), que incluiu 37 itens alimentares agrupados em nove categorias (insetos aquáticos, outros invertebrados aquáticos, fragmento de artrópodes, peixe, fragmento de planta, sementes, insetos terrestres, outros invertebrados terrestrese vertebrados terrestres). Também foram obtidos a amplitude de nicho (Índice de Levins) e o Índice de Repleção (IR%) da dieta do bagre. Foram observadas diferenças na composição da dieta entre os períodos hidrológicos, principalmente relacionada à estação seca e cheia, mas não houve variação na composição da dieta entre os sexos e maturidade. No período de cheia (especificamente no mês de março/2009) o bagre mostrou uma alimentação mais especialista enquanto que no período de seca (novembro/2008) os valores de amplitude de nicho classificaram-no com hábitos mais generalistas quanto a alimentação. A quantidade de alimentos ingeridos por A. longimanus com base no Índice de Repleção (IR%), não diferiram significativamente entre o sexo e maturidade. No entanto, foram evidenciadas diferenças quando comparados os meses estudados. Estes resultados fornecem informações biológicas importantes sobre a ecologia trófica de peixes da família Auchenipteridae. Tendo em vista a maior ocorrência de itens alóctones na dieta deste bagre, esta pesquisa também reforça a importância das matas ciliares em ambientes críticos na manutenção e conservação das populações selvagens de peixes na bacia amazônica.

Investigation of single-strand conformational polymorphism of the TP53 gene in women with a family history of breast cancer

Breast cancer in families with germ line mutations in the TP53 gene has been described in the medical literature. Mutation screening for susceptibility genes should allow effective prophylactic and preventive measures. Using single-strand conformational polymorphism, we screened for mutations in exons 5, 6, 7 and 8 of gene TP53 in the peripheral blood of 8 young non-affected members (17 to 36 years old) of families with a history of breast cancer. Studies of this type on young patients (mean age, 25 years) are very rare in the literature. The identification of these mutations would contribute to genetic counseling of members of families with predisposition to breast cancer. The results obtained did not show any polymorphism indicating mutation. In our sample, the familial tumorigenesis is probably related to other gene etiologies.

Chemical composition of phytoplankton from the estuaries of Eastern Amazonia

O fitoplancton é de grande importância para os estudos das interações solo-água, como indicadores de modificações químicas e biológicas nos ecossistemas naturais. O objetivo desse estudo foi determinar a composição química total do fitoplâncton nos estuários do rio Pará e Mocajuba (Pará, Brasil). As análises químicas foram realizadas na água superficial, sedimento de fundo (amostra total e fração biodisponível) e no fitoplancton, por espectrometria óptica e de massa com plasma indutivamente acoplado. A composição química elementar do fitoplancton é composta por elevadas concentrações de Ca, P, Mn, Fe, Zn, Al, Ba e Pb. O fitoplancton do estuário do rio Mocajuba é rico em Fe (2.967 a 84.750 µg g^-1) e do rio Pará rico em Al (1.216 a 15.389 µg g^-1), provavelmente com contribuição antropogênica. O material fitoplanctonico apresentou elevado fator de bioconcentração proveniente tanto da água quanto da fração biodisponível, e reflete a eficiência desses organismos em concentrar metais.

Genetic Instability Persists in Non-Neoplastic Urothelial Cells from Patients with a History of Urothelial Cell Carcinoma

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Transmissable Dog Cancer Genome Reveals the Origin and History of an Ancient Cell Lineage

Canine transmissible venereal tumor (CTVT) is the oldest known somatic cell lineage. It is a transmissible cancer that propagates naturally in dogs. We sequenced the genomes of two CTVT tumors and found that CTVT has acquired 1.9 million somatic substitution mutations and bears evidence of exposure to ultraviolet light. CTVT is remarkably stable and lacks subclonal heterogeneity despite thousands of rearrangements, copy-number changes, and retrotransposon insertions. More than 10,000 genes carry nonsynonymous variants, and 646 genes have been lost. CTVT first arose in a dog with low genomic heterozygosity that may have lived about 11,000 years ago. The cancer spawned by this individual dispersed across continents about 500 years ago. Our results provide a genetic identikit of an ancient dog and demonstrate the robustness of mammalian somatic cells to survive for millennia despite a massive mutation burden.

Chromosomal organization and evolutionary history of Mariner transposable elements in Scarabaeinae coleopterans

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

A new species of allophryne (anura: allophrynidae) from the atlantic rain forest biome of eastern Brazil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Cyatta abscondita: Taxonomy, Evolution, and Natural History of a New Fungus-Farming Ant Genus from Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Analysis of localized muscle fatigue in elderly women with and without a history of falls using electromyographic signal frequency parameters

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Association between interleukin-6 polymorphism in the-174 G/C region and hearing loss in the elderly with a history of occupational noise exposure

Introduction: The biological processes involved in noise-induced hearing loss (NIHL) are still unclear. The involvement of inflammation in this condition has been suggested.Objective: To investigate the association between interleukin - 6 (IL-6) polymorphism and susceptibility to NIHL.Methods: This was a cross-sectional study with a sample of 191 independent elderly individuals aged >60 years of age. Information on exposure to occupational noise was obtained by interviews. Audiological evaluation was performed using pure tone audiometry and genotyped through PCR by restriction fragment length polymorphism - PCR-RFLP. Data were analyzed using the chi-square test and the odds ratio (OR), with the significance level set at 5%.Results: Among elderly with hearing loss (78.0%), 18.8% had a history of exposure to occupational noise. There was a statistically significant association between the genotype frequencies of the IL-6 - 174 and NIHL. The elderly with the CC genotype were less likely to have hearing loss due to occupational noise exposure when compared to those carrying the GG genotype (OR = 0.0124; 95% CI 0.0023-0.0671; p<0.001).Conclusion: This study suggests there is an association of polymorphisms in the IL-6 gene at position - G174C with susceptibility to noise-induced hearing loss. (C) 2014 Associacao Brasileira de Otorrinolaringologia e Cirurgia Cervico-Facial. Published by Elsevier Editora Ltda. All rights reserved.

Genetic history of hepatitis C virus in Pakistan

Hepatitis C virus (HCV) genotype 3a accounts for similar to 80% of HCV infections in Pakistan, where similar to 10 million people are HCV-infected. Here, we report analysis of the genetic heterogeneity of HCV NS3 and NS5b subgenomic regions from genotype 3a variants obtained from Pakistan. Phylogenetic analyses showed that Pakistani genotype 3a variants were as genetically diverse as global variants, with extensive intermixing. Bayesian estimates showed that the most recent ancestor for genotype 3a in Pakistan was last extant in similar to 1896-1914 C.E. (range: 1851-1932). This genotype experienced a population expansion starting from similar to 1905 to similar to 1970 after which the effective population leveled. Death/birth models suggest that HCV 3a has reached saturating diversity with decreasing turnover rate and positive extinction. Taken together, these observations are consistent with a long and complex history of HCV 3a infection in Pakistan. Published by Elsevier B.V.

Molecular Phylogeny and Biogeographic History of the Armored Neotropical Catfish Subfamilies Hypoptopomatinae, Neoplecostominae and Otothyrinae (Siluriformes: Loricariidae)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Evolutionary History of the PER3 Variable Number of Tandem Repeats (VNTR): Idiosyncratic Aspect of Primate Molecular Circadian Clock

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Natural History of Paratelmatobius gaigeae (Amphibia, Anura, Leptodactylidae): Description of the Tadpole and Advertisement Call

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)