Tratamentos pré-germinativos em sementes de araçá-boi (Eugenia stipitata)

O araçá-boi (Eugenia stipitata) é uma fruteira nativa com grande potencial agroindustrial. Suas sementes são intolerantes ao dessecamento e apresentam dormência, o que dificulta sua propagação. O objetivo do trabalho foi analisar as características de germinação das sementes de araçá-boi submetidas a diferentes tratamentos pré-germinativos: retirada parcial do tegumento, lixiviação e fracionamento. A germinação das sementes intactas e com retirada parcial do tegumento foi realizada em dois ambientes: casa de vegetação e viveiro telado com sombrite de 50%. Para a lixiviação, as sementes foram colocadas em balde e submetidas à lixiviação, em água corrente, por até 90 dias, com intervalos de 10 dias. O fracionamento das sementes foi realizado de acordo com a posição da zona meristemática de protrusão da raiz e parte aérea (fracionamento transversal e longitudinal). A retirada parcial do tegumento das sementes de araçá-boi diminui o tempo médio de germinação de 91 para 48 dias, com 100% de emergência. As sementes de araçá-boi mantidas submersas em água corrente por até 50 dias mantêm a viabilidade e o vigor. As frações de sementes que apresentam a protuberância meristemática formam plântulas normais, com as mesmas características de germinação das sementes intactas, porém os diferentes tipos de fracionamento não aceleraram nem uniformizaram a germinação das sementes.

Energiantuotanto kuivalla puupolttoaineella

Diplomityössä esitetään taustatietona puupolttoaineen ominaisuuksien vaikutusta energiantuotantolaitoksen mitoitukseen ja käyttöön. Työssä esitellään ensimmäisessä vaiheessa tehty laskentamalli, jolla on tehty 20 MW laitoksen mitoitus kolmelle eri polttoaineen kosteudelle. Mitoitustulosten perusteella määritellään jokaiselle laitokselle energiantuotantohinta, joita vertaillaan. Vertailun avulla saadaan tieto siitä, onko uusi laitos syytä mitoittaa kuivatulle puupolttoaineelle investointisäästöjen vuoksi. Työssä tarkastellaan myös risutukkien ominaisuuksia, hyödyntämismahdollisuuksia sekä niiden varastokuivatuksen taloudellisuutta.

Biocide analysis, usability and stability

Biosidien toimittajat tavallisesti suorittavat biosidien annostelumäärien hallinnan paperi- ja kartonkiteollisuudessa. Useimmiten annostelun hallinta määritetään epäsuorilla menetelmillä, kuten esimerkiksi määrittämällä bakteerien kasvua. Biosidien tehoaineiden todellista konsentraatiota tai määrää prosessivesissä tai lopputuotteessa ei tavallisesti mitata. Diplomityössä kehitettiin kolmelle paperiteollisuudessa yleisesti käytetyllä biosidin tehoaineelle analyyttiset menetelmät. Menetelmät kehitettiin glutaraldehydille, 2,2-dibromi-3-nitriilipropionamidi:lle (DBNPA) ja 5-kloori-2-metyyli-4-isotiatsoliini-3-oni:lle (CMI). Kehitettyjä menetelmiä käytettiin tehoaineiden stabiilisuuden seuraamiseen vesiliuoksessa eri pH:ssa ja lämpötilassa. Lisäksi kartonkinäytteistä tehtiin uuttokokeita ja yritettiin kehittää uuttomenetelmät, joilla pystyttäisiin määrittämään biosidien tehoaineiden jäännöspitoisuuksia lopputuotteesta. Glutaraldehydille ja CMI:lle onnistuttiin kehittämään uuttomenetelmät, joilla pystyttiin määrittämään kartongista tutkittujen tehoaineiden jäännöspitoisuudet. Saadut tulokset vaikuttavat realistisilta. Glutaraldehydille ja DBNPA:lle tehtiin stabiilisuuskokeita ja tulokset ovat samankaltaisia mitä muut tutkijat ovat saaneet.

Growth and production of irrigated vitória pineapple grown in semi-arid conditions

This study aimed to evaluate the growth characteristics of irrigated Vitória pineapple plants grown in semi-arid conditions and determine its developmental stages based on those characteristics. It was used a randomized block design with four replicates. The experimental treatments were: plant harvest at 270, 330, 390, 450, 510, 570, 690, 750, and 810 days after planting (DAP). The following variables were determined: plant height, stem diameter, D-leaf length, D-leaf fresh and dry mass, biomass production of plants and plant parts (organs), and vegetative biomass. Five phenological stages are proposed based on vegetative biomass production: < 20% biomass production (V1); 21-40% (V2); 41-60% (V3); 61-80% (V4); and > 80% (V5). The maximum growth rate for plant height, D-leaf length, and stem diameter was observed at the end of the phenological stage V1 (390-411 DAP), and at the end of stage V5 these plant traits had average values of 106, 82, and 7 cm, respectively. The maximum biomass accumulation rates were observed at stages V4 and V5, resulting in a final fruit yield and total fresh biomass of 72 t ha-1 and 326 t ha-1, respectively. Finally, we estimated that 80% of the accumulated biomass may remain in the field after fruit and slip harvest, and could be incorporated as plant residue into the soil.

Ciclo de produção e demanda térmica de clones da videira 'Concord' sobre diferentes porta-enxertos

O objetivo do trabalho foi determinar a duração do ciclo de produção e a necessidade térmica de seis clones de 'Concord' sobre três porta-enxertos no norte do Paraná. Foram avaliados os clones '22', '28', '49', '202', '211' e '225', obtidos pela Embrapa Uva e Vinho, e enxertados sobre os porta-enxertos 'IAC 766', 'IAC 572' e '420-A'. O trabalho foi realizado em área experimental pertencente ao Centro Tecnológico da COROL - Cooperativa Agroindustrial, localizado no município de Rolândia-PR. O experimento foi realizado em esquema fatorial (6 clones x 3 porta-enxertos), em delineamento inteiramente casualizado, com cinco repetições. As plantas foram conduzidas em sistema de latada, no espaçamento de 4,0 m x 2,0 m, e as avaliações foram realizadas nas safras de 2009/2010 e 2010/2011. Verificou-se que dentre os clones de 'Concord' avaliados, o '202' apresenta a menor duração do ciclo entre a poda e a colheita, sendo portanto o mais precoce. Dentre os porta-enxertos, o '420-A' induz a maior taxa de acúmulo diário de sólidos solúveis do mosto, proporcionando redução do ciclo total e da demanda térmica dos clones de 'Concord', enquanto o 'IAC 572' induz a menor taxa, promovendo aumento do ciclo e da demanda térmica dos clones.

Puunpolton mahdollisuudet Suomenojan voimalaitoksella

Puuenergian käyttö on viime vuosina lisääntynyt kaukolämmön tuotannossa sekä yhdistetyssä sähkön ja lämmön tuotannossa. Puun kilpailukykyä polttoaineena ovat lisänneet polttotekniikan ja korjuutekniikoiden kehittyminen. Puun energiakäyttöä on edistänyt myös valtiovalta tukien ja veroratkaisuiden avulla, koska fossiilisten polttoaineiden korvaaminen puupolttoaineilla tukee Suomen ilmastopoliittisia tavoitteita. Tämän työn tavoitteena oli selvittää puupolttoaineiden käytön mahdollisuudet Espoon Sähkön Suomenojan voimalaitoksella. Nykyiset Suomenojan pääpolttoaineet ovat kivihiili ja maakaasu. Suomenojalle toimitetut puupolttoaineet koostuisivat sahoilta saatavista sivutuotteista, metsätähdehakkeesta ja kierrätyspuusta. Puupolttoaineiden taloudellinen saatavuus vaihtelee alueittain huomattavasti. Espoo ei tässä suhteessa ole sijainniltaan edullinen. Saatujen polttoainetarjousten perusteella puunpolton kustannukset nousevat kivihiilen kustannuksia korkeammiksi kuljetusetäisyyksistä johtuen, kun puunpoltto on yli 300 GWh/a. Tämä vastaisi 10 prosenttia Espoon Sähkön vuoden 2000 kokonaispolttoainekäytöstä ja 8 prosenttia arvioidusta polttoaineiden käytöstä vuodelle 2010. Puuta voidaan polttaa leijukerrostekniikkaan perustuvissa kattiloissa, arinakattiloissa, pölypolttona tai kaasuttamalla ja johtamalla tuotekaasu poltettavaksi. Puun ravinneaineista kloori voi aiheuttaa kuumakorroosiota höyrykattiloiden tulistimissa. Tätä pyritään estämään seospoltolla rikkipitoisten polttoaineiden, kuten turpeen tai kivihiilen kanssa. Seospoltto muiden polttoaineiden kanssa parantaa myös puun palamistulosta. Puupolttoaineiden kosteus voi olla jopa 60 prosenttia. Tässä työssä tutkittiin puun energiakäytölle pääasiassa kuutta eri ratkaisua. Ne olivat: kaasuttimen rakentaminen ja tuotekaasun poltto nykyisessä hiilipölykattilassa, hiilipölykattilan muuttaminen leijukerrospolttoon, uuden vastapainevoimalaitoksen rakentaminen, Suomenojalla olevan hiilivesikattilan muuttaminen puupolttoaineille, kivihiilen ja puun yhteispoltto hiilipölykattilassa puu/hiilipölypolttimilla sekä leijukerroskattilan rakentaminen ja sen yhdistäminen olemassa olevaan höyryturbiiniin. Taloudellisesti kannattaviksi ratkaisuiksi osoittautui kaksi viimeksi mainittua. Jos voimalaitostonttia halutaan säästää myöhempää maakaasuvoimalaitoshanketta varten, nousee puun ja kivihiilen yhteispoltto puu/hiilipölypolttimilla oleellisesti paremmaksi vaih-toehdoksi. Tämän vaihtoehdon korollinen takaisinmaksuaika on 7-11 vuotta, riippuen puunpolton laajuudesta. Kannattavuudelle on hyvin tärkeää puulla tuotetun sähkön tuki. Yhteispolton ansiosta hiilipölykattilan rikkidioksidi- ja hiilidioksidipäästöt sekä mahdollisesti myös typenoksidipäästöt vähenisivät. Puunpoltto lisää savukaasuvirtaa, nostaa savukaasun loppulämpötilaa ja mahdollisesti laskee hyötysuhdetta. Laitoksen rekkaliikenne lisääntyy. Kaikki esitetyt ratkaisuvaihtoehdot vähentäisivät hiilidioksidipäästöjä. Puunpolttoratkaisuilla ei kuitenkaan pystytä vähentämään Espoon Sähkön energiantuotannon hiilidioksidipäästöjä alle vuoden 1990 tason, mutta hiilidioksidin ominaispäästöissä edellä mainitun tason alle päästäisiin.

Oncogenic K-Ras segregates at spatially distinct plasma membrane signaling platforms according to its phosphorylation status

Activating mutations in the K-Ras small GTPase are extensively found in human tumors. Although these mutations induce the generation of a constitutively GTP-loaded, active form of K-Ras, phosphorylation at Ser181 within the C-terminal hypervariable region can modulate oncogenic K-Ras function without affecting the in vitro affinity for its effector Raf-1. In striking contrast, K-Ras phosphorylated at Ser181 shows increased interaction in cells with the active form of Raf-1 and with p110α, the catalytic subunit of PI 3-kinase. Because the majority of phosphorylated K-Ras is located at the plasma membrane, different localization within this membrane according to the phosphorylation status was explored. Density-gradient fractionation of the plasma membrane in the absence of detergents showed segregation of K-Ras mutants that carry a phosphomimetic or unphosphorylatable serine residue (S181D or S181A, respectively). Moreover, statistical analysis of immunoelectron microscopy showed that both phosphorylation mutants form distinct nanoclusters that do not overlap. Finally, induction of oncogenic K-Ras phosphorylation - by activation of protein kinase C (PKC) - increased its co-clustering with the phosphomimetic K-Ras mutant, whereas (when PKC is inhibited) non-phosphorylated oncogenic K-Ras clusters with the non-phosphorylatable K-Ras mutant. Most interestingly, PI 3-kinase (p110α) was found in phosphorylated K-Ras nanoclusters but not in non-phosphorylated K-Ras nanoclusters. In conclusion, our data provide - for the first time - evidence that PKC-dependent phosphorylation of oncogenic K-Ras induced its segregation in spatially distinct nanoclusters at the plasma membrane that, in turn, favor activation of Raf-1 and PI 3-kinase.

Identification of novel HIV restriction factors

To efficiently replicate within mammalian cells, viruses have to manoeuvre through complex host mechanisms, hijacking a network of host proteins to achieve successful propagation. To prevent this invasion, cells have evolved over time to efficiently block the incursing pathogen by direct or indirect targeting. Human immunodeficiency virus (HIV) is a retrovirus of major global public health issue. In the last decade, extensive focus on innate immune proteins has been given, and particularly restriction factors, proteins inhibiting HIV replication by affecting various stages of the viral cycle. Because of the importance of developing new HIV therapies that are associated with reduced side effects and resistances, there is an urge to understand the antiviral response against HIV. Using common features of known restriction factors as a signature to identify new anti-HIV factors, candidates were identified. Particularly multiple members of the apolipoproteins L (APOL) family were found. Cotransfection experiments confirmed very potent inhibitory effects on HIV-1 expression. Further characterization of APOL6, the best candidate, was carried out. APOL6 was not able to inhibit HIV specifically but rather inhibited any gene-encoded DNA that was cotransfected and therefore APOL6 does not classify as a bona fide restriction factor. In addition, we were able to map the activity of APOL6 to the MAD domain and mainly to residue 174. We also found that other members of the family identified in the screen, APOL1 and 3, could have similar mechanism of action as APOL6. Finally, although the complete mechanism of action of APOL6 has yet to be elucidated, it might be blocked during transfections, potentially improving transfection of primary cells. -- Pour se répliquer efficacement dans les cellules de mammifères, les virus doivent manoeuvrer à travers des mécanismes cellulaires complexes et détourner un réseau de protéines de l'hôte. Pour empêcher cette invasion, les gènes de l'hôte ont évolué dans le temps pour cibler efficacement, directement ou indirectement, l'agent pathogène. Le virus de l'immunodéficience humaine (VIH) est un rétrovirus de problème majeur de santé publique mondiale, mais le faible risque de transmission du virus pourrait être expliqué par la présence d'un système antiviral de l'hôte qui, en cas d'échec, conduit à une infection productive. Durant la dernière décennie, il y a eu un intérêt spécial porté sur les protéines immunitaires innées appelé facteurs de restriction présentant des effets inhibiteurs puissants sur la réplication du VIH en affectant différentes étapes du cycle viral. En raison de l'importance de la recherche de nouvelles thérapies anti-VIH associées à des effets secondaires et des résistances réduites comparé aux traitements actuels, il existe un besoin de comprendre la réponse antivirale innée contre le VIH. Basé sur des caractéristiques communes des facteurs de restriction connus, nous avons proposé d'identifier de nouveaux facteurs anti-VIH. Nous avons trouvé une famille de protéines, les apolipoprotéines L (APOL) montrant les effets inhibiteurs très puissants contre l'expression du VIH-1 dans des expériences de co-transfection. Nous avons décidé d'approfondir le rôle de ces protéines dans l'immunité innée et de se concentrer sur le meilleur candidat APOL6. Nous avons en outre établi qu'APOL6 n'a pas d'activité anti-virale spécifique et donc pas classé comme un facteur de bonne foi de restriction. Par ailleurs, APOL6 est capable d'inhiber fortement l'expression de tout Plasmide cotransfecté. En outre, nous avons été en mesure de cartographier l'activité d'APOL6 au domaine MAD et principalement au résidu 174. Nous avons également constaté que d'autres membres de la famille identifiés dans l'étude, APOL1 et 3, pourraient avoir le même mécanisme d'action qu'APOL6. Enfin, bien que le mécanisme d'action complet d'APOL6 reste à être élucidé, il pourrait être d'une importance biotechnologique car il pourrait potentiellement faciliter la transfection de cellules primaires après l'inhibition d'APOL6.

Distinct OGT-Binding Sites Promote HCF-1 Cleavage.

Human HCF-1 (also referred to as HCFC-1) is a transcriptional co-regulator that undergoes a complex maturation process involving extensive O-GlcNAcylation and site-specific proteolysis. HCF-1 proteolysis results in two active, noncovalently associated HCF-1N and HCF-1C subunits that regulate distinct phases of the cell-division cycle. HCF-1 O-GlcNAcylation and site-specific proteolysis are both catalyzed by O-GlcNAc transferase (OGT), which thus displays an unusual dual enzymatic activity. OGT cleaves HCF-1 at six highly conserved 26 amino acid repeat sequences called HCF-1PRO repeats. Here we characterize the substrate requirements for OGT cleavage of HCF-1. We show that the HCF-1PRO-repeat cleavage signal possesses particular OGT-binding properties. The glutamate residue at the cleavage site that is intimately involved in the cleavage reaction specifically inhibits association with OGT and its bound cofactor UDP-GlcNAc. Further, we identify a novel OGT-binding sequence nearby the first HCF-1PRO-repeat cleavage signal that enhances cleavage. These results demonstrate that distinct OGT-binding sites in HCF-1 promote proteolysis, and provide novel insights into the mechanism of this unusual protease activity.

Characterization of volatile organic gunshot residues in fired handgun cartridges by headspace sorptive extraction

In forensic investigation of firearm-related cases, determination of the residual amount of volatile compounds remaining inside a cartridge could be useful in estimating the time since its discharge. Published approaches are based on following the decrease of selected target compounds as a function of time by using solid phase micro-extraction (SPME). Naphthalene, as well as an unidentified decomposition product of nitrocellulose (referred to as "TEA2"), are usually employed for this purpose. However, reliability can be brought into question given their high volatility and the low reproducibility of their extracted quantities. In order to identify alternatives and therefore develop improved dating methods, an extensive study on the composition and variability of volatile residues in nine different types of cartridges was carried out. Analysis was performed using headspace sorptive extraction (HSSE), which is a more exhaustive technique compared to SPME. 166 compounds were identified (several of which for the first time), and it was observed that the final compositional characteristics of each residue were strongly dependent on its source. Variability of single identified compounds within and between different types of cartridge, as well as their evolution over time, was also studied. Many explosion products containing up to 4 aromatic rings were found to be globally present in high proportions amongst residues. 27 of them (excluding naphthalene) also presented detectable decreases during the first 24 h. Therefore, they could be used as complementary target analytes in future dating methods.

Source separation techniques applied to linear prediction

The prediction filters are well known models for signal estimation, in communications, control and many others areas. The classical method for deriving linear prediction coding (LPC) filters is often based on the minimization of a mean square error (MSE). Consequently, second order statistics are only required, but the estimation is only optimal if the residue is independent and identically distributed (iid) Gaussian. In this paper, we derive the ML estimate of the prediction filter. Relationships with robust estimation of auto-regressive (AR) processes, with blind deconvolution and with source separation based on mutual information minimization are then detailed. The algorithm, based on the minimization of a high-order statistics criterion, uses on-line estimation of the residue statistics. Experimental results emphasize on the interest of this approach.

Nonlinear prediction based on score function

The linear prediction coding of speech is based in the assumption that the generation model is autoregresive. In this paper we propose a structure to cope with the nonlinear effects presents in the generation of the speech signal. This structure will consist of two stages, the first one will be a classical linear prediction filter, and the second one will model the residual signal by means of two nonlinearities between a linear filter. The coefficients of this filter are computed by means of a gradient search on the score function. This is done in order to deal with the fact that the probability distribution of the residual signal still is not gaussian. This fact is taken into account when the coefficients are computed by a ML estimate. The algorithm based on the minimization of a high-order statistics criterion, uses on-line estimation of the residue statistics and is based on blind deconvolution of Wiener systems [1]. Improvements in the experimental results with speech signals emphasize on the interest of this approach.

Computational toolbox towards evolutionary domain mapping of membrane proteins

Membrane proteins account for about 20% to 30% of all proteins encoded in a typical genome. They play central roles in multiple cellular processes mediating the interaction of the cell with its surrounding. Over 60% of all drug targets contain a membrane domain. The experimental difficulties of obtaining a crystal structural severely limits our ability or understanding of membrane protein function. Computational evolutionary studies of proteins are crucial for the prediction of 3D structures. In this project, we construct a tool able to quantify the evolutionary positive selective pressure on each residue of membrane proteins through maximum likelihood phylogeny reconstruction. The conservation plot combined with a structural homology model is also a potent tool to predict those residues that have essentials roles in the structure and function of a membrane protein and can be very useful in the design of validation experiments.

Structural Insight into the Mode of Action of a Direct Inhibitor of Coregulator Binding to the Thyroid Hormone Receptor.

The development of nuclear hormone receptor antagonists that directly inhibit the association of the receptor with its essential coactivators would allow useful manipulation of nuclear hormone receptor signaling. We previously identified 3-(dibutylamino)-1-(4-hexylphenyl)-propan-1-one (DHPPA), an aromatic β-amino ketone that inhibits coactivator recruitment to thyroid hormone receptor β (TRβ), in a high-throughput screen. Initial evidence suggested that the aromatic β-enone 1-(4-hexylphenyl)-prop-2-en-1-one (HPPE), which alkylates a specific cysteine residue on the TRβ surface, is liberated from DHPPA. Nevertheless, aspects of the mechanism and specificity of action of DHPPA remained unclear. Here, we report an x-ray structure of TRβ with the inhibitor HPPE at 2.3-Å resolution. Unreacted HPPE is located at the interface that normally mediates binding between TRβ and its coactivator. Several lines of evidence, including experiments with TRβ mutants and mass spectroscopic analysis, showed that HPPE specifically alkylates cysteine residue 298 of TRβ, which is located near the activation function-2 pocket. We propose that this covalent adduct formation proceeds through a two-step mechanism: 1) β-elimination to form HPPE; and 2) a covalent bond slowly forms between HPPE and TRβ. DHPPA represents a novel class of potent TRβ antagonist, and its crystal structure suggests new ways to design antagonists that target the assembly of nuclear hormone receptor gene-regulatory complexes and block transcription.

Fluid dynamical prediction of changed v1-flow at energies available at the CERN Large Hadron Collider

Substantial collective flow is observed in collisions between lead nuclei at Large Hadron Collider (LHC) as evidenced by the azimuthal correlations in the transverse momentum distributions of the produced particles. Our calculations indicate that the global v1-flow, which at RHIC peaked at negative rapidities (named third flow component or antiflow), now at LHC is going to turn toward forward rapidities (to the same side and direction as the projectile residue). Potentially this can provide a sensitive barometer to estimate the pressure and transport properties of the quark-gluon plasma. Our calculations also take into account the initial state center-of-mass rapidity fluctuations, and demonstrate that these are crucial for v1 simulations. In order to better study the transverse momentum flow dependence we suggest a new"symmetrized" vS1(pt) function, and we also propose a new method to disentangle global v1 flow from the contribution generated by the random fluctuations in the initial state. This will enhance the possibilities of studying the collective Global v1 flow both at the STAR Beam Energy Scan program and at LHC.