Influência de porta-enxertos no crescimento de clones de seringueira no Estado de São Paulo

Este trabalho foi instalado na Estação Experimental de Agronomia de Pindorama, SP, com a finalidade de avaliar a interação enxerto vs. porta-enxertos de seringueira, Hevea brasiliensis (Willd. ex Adr. de Juss.) Müell. Arg. Os clones utilizados foram IAN 873, RRIM 600, RRIM 701, PB 235, PR 107 e GT 1, enxertados em seis diferentes porta-enxertos provenientes de sementes ilegítimas dos clones IAN 873, RRIM 600, RRIM 701, PB 235, GT 1 e de sementes não selecionadas. O delineamento utilizado foi o de blocos ao acaso, com parcelas subdivididas, tendo os porta-enxertos como tratamentos e os clones (enxertos) como subtratamentos, em quatro repetições. Os resultadosmostram que no período de avaliação o porta-enxerto GT 1 e IAN 873 foram os que produziram os maiores perímetros por planta, sendo 10,20 % maior que o de sementes não selecionadas. Paralelamente, os enxertos em vigor mostraram que os clones PB 235, RRIM 600 e PR 107 apresentaram melhor desempenho, com um perímetro do caule 8,12% maior que o dos clonesRRIM 701 e GT 1,notadamente os de menor vigor. A interação enxerto vs. porta-enxerto não foi significativa.

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21.

The goals of the human genome project did not include sequencing of the heterochromatic regions. We describe here an initial sequence of 1.1 Mb of the short arm of human chromosome 21 (HSA21p), estimated to be 10% of 21p. This region contains extensive euchromatic-like sequence and includes on average one transcript every 100 kb. These transcripts show multiple inter- and intrachromosomal copies, and extensive copy number and sequence variability. The sequencing of the "heterochromatic" regions of the human genome is likely to reveal many additional functional elements and provide important evolutionary information.

Interactions of dietary whole-grain intake with fasting glucose- and insulin-related genetic loci in individuals of European descent: a meta-analysis of 14 cohort studies.

Whole-grain foods are touted for multiple health benefits, including enhancing insulin sensitivity and reducing type 2 diabetes risk. Recent genome-wide association studies (GWAS) have identified several single nucleotide polymorphisms (SNPs) associated with fasting glucose and insulin concentrations in individuals free of diabetes. We tested the hypothesis that whole-grain food intake and genetic variation interact to influence concentrations of fasting glucose and insulin. Via meta-analysis of data from 14 cohorts comprising ∼ 48,000 participants of European descent, we studied interactions of whole-grain intake with loci previously associated in GWAS with fasting glucose (16 loci) and/or insulin (2 loci) concentrations. For tests of interaction, we considered a P value <0.0028 (0.05 of 18 tests) as statistically significant. Greater whole-grain food intake was associated with lower fasting glucose and insulin concentrations independent of demographics, other dietary and lifestyle factors, and BMI (β [95% CI] per 1-serving-greater whole-grain intake: -0.009 mmol/l glucose [-0.013 to -0.005], P < 0.0001 and -0.011 pmol/l [ln] insulin [-0.015 to -0.007], P = 0.0003). No interactions met our multiple testing-adjusted statistical significance threshold. The strongest SNP interaction with whole-grain intake was rs780094 (GCKR) for fasting insulin (P = 0.006), where greater whole-grain intake was associated with a smaller reduction in fasting insulin concentrations in those with the insulin-raising allele. Our results support the favorable association of whole-grain intake with fasting glucose and insulin and suggest a potential interaction between variation in GCKR and whole-grain intake in influencing fasting insulin concentrations.

Avaliação de métodos de correção do estande para estimar a produtividade em milho

Este trabalho objetivou determinar o método de correção de estande mais adequado aos dados de produtividade na cultura do milho, na avaliação de 33 cultivares, em oito ambientes. Os métodos avaliados foram: sem correção, regra de três, método de Zuber, covariância de estande médio, covariância de estande ideal, o método proposto por Cruz, o método proposto por Vencovsky & Cruz, e o proposto neste trabalho, de correção estratificada com base no agrupamento de cultivares, para a característica estande, pelo teste de Scott & Knott. O método proposto neste trabalho, o de covariância de estande ideal e o de Vencovsky & Cruz foram mais adequados para essa correção, pois apresentaram baixos valores de coeficiente de variação e altos valores de F, confirmados pelos baixos valores de Pi e Pi multivariado na análise conjunta. Os métodos de regra de três e o proposto por Cruz apresentaram as maiores médias de produção, o que superestima o valor real da produção média. O método proposto neste trabalho foi eficiente em corrigir as cultivares, uma vez que as cultivares mais produtivas foram também as de maior potencial em deixar descendentes, medido pelo estande médio.

08024-14 Duck Creek Watershed Final Report

River Action is requesting funds for a project that offers design, technical and financial assistance to residential and commercial landowners and municipalities for the installation of buffers along Duck Creek and its tributaries. The buffers will improve water quality, reduce erosion on stream banks and provide habitat for wildlife. The projects will be planned and implemented through public meetings and educational workshops. This method of community involvement will increase awareness and education concerning the impairments in Duck Creek in Davenport and Bettendorf in Scott County, Iowa and promote personal responsibility and stewardship of watersheds.

Caracterização fenotípica e genotípica de progênies de pupunheira para palmito

A pupunheira (Bactris gasipaes H.B.K.) é considerada a espécie com maior potencial de produção de palmitos, em substituição aos tradicionais açaí (Euterpe oleracea Mart.) e juçara (Euterpe edulis Mart.). Os objetivos deste trabalho foram estimar alguns parâmetros genéticos associados à avaliação de 31 progênies de meios-irmãos de pupunheiras e classificar as melhores progênies pelo teste de médias de Scott-Knott. O delineamento experimental usado foi o de blocos ao acaso com três repetições, com parcelas experimentais de cinco plantas. As avaliações dos caracteres de altura da planta no momento do corte (APC), diâmetro da planta na altura do colo (DPC) e peso do palmito líquido (PPL) foram realizadas aos 15, 26 e 37 meses após o plantio. A população avaliada apresentou variação genética disponível para seleção e não sofreu efeito de interação com os cortes; o caráter PPL deverá ser testado com maior número de repetições, sendo o caráter mais sensível a efeitos de cortes; a razão entre o coeficiente de variação genética e o coeficiente de variação do erro indica que existem dificuldades nos processos de seleção nos caracteres avaliados; a correlação genotípica entre os caracteres DPC e PPL apresenta-se promissora para facilitar a seleção indireta do caráter PPL pelo caráter DPC. O agrupamento de médias de Scott-Knott classificou as progênies em dois grupos.

Does CRP Play a Causal Role in the Development of Coronary Heart Disease: Results of a Mendelian Randomisation Experiment Involving 128,935 People

Background: C-reactive protein (CRP) is associated with risk of coronary heart disease (CHD). Whether CRP is causally associated with CHD or merely a marker of underlying atherosclerosis is uncertain. Methods: We used a Mendelian randomisation design to investigate the causal relationship of CRP with CHD. We identified three genetic variants in the CRP locus (rs7553007, rs1130864 and rs1205) which influence CRP levels. We tested the three SNPs for association with CHD amongst 28,112 CHD cases and 100,823 controls. We then compared the observed relationship between the SNPs and CHD, with that predicted from the association of SNPs with CRP levels, and of CRP levels with CHD. Results: SNPs in the CRP locus were not associated with CHD: rs7553007, OR 0.98 (95% CI, 0.94-1.01); rs1130864, OR 1.00 (95% CI, 0.86-1.15); rs1205, OR 1.03 (95% CI, 0.99-1.07); combined OR for all three SNPs, 1.00 (95% CI, 0.97-1.02), per 20% lower CRP (figure). In contrast, the predicted OR for CHD from a 20% lower CRP level is 0.94 (95% CI, 0.94- 0.95), based on meta-analysis of observational studies. Conclusions: Though CRP variants are associated with CRP levels, and CRP levels with risk of CHD, we observed that CRP variants are not associated with CHD risk. Our Mendelian randomisation experiment strongly argues against a causal association of CRP with CHD.

Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.

Chronic kidney disease (CKD), impairment of kidney function, is a serious public health problem, and the assessment of genetic factors influencing kidney function has substantial clinical relevance. Here, we report a meta-analysis of genome-wide association studies for kidney function-related traits, including 71,149 east Asian individuals from 18 studies in 11 population-, hospital- or family-based cohorts, conducted as part of the Asian Genetic Epidemiology Network (AGEN). Our meta-analysis identified 17 loci newly associated with kidney function-related traits, including the concentrations of blood urea nitrogen, uric acid and serum creatinine and estimated glomerular filtration rate based on serum creatinine levels (eGFRcrea) (P < 5.0 × 10(-8)). We further examined these loci with in silico replication in individuals of European ancestry from the KidneyGen, CKDGen and GUGC consortia, including a combined total of ∼110,347 individuals. We identify pleiotropic associations among these loci with kidney function-related traits and risk of CKD. These findings provide new insights into the genetics of kidney function.

Ajustes de quadrado médio do erro em ensaios de competição de cultivares de milho pelo método de Papadakis

O objetivo deste trabalho foi avaliar as diferentes formas de calcular o índice de produtividade, usado como covariável pelo método de Papadakis, e verificar se este método é eficiente para aumentar a precisão experimental nos ensaios de competição de cultivares de milho (Zea mays L.) com grande número de tratamentos. Em relação ao rendimento de grãos, procedeu-se a verificação das pressuposições do modelo matemático, a análise da variância no delineamento de blocos ao acaso e a análise de covariância no delineamento inteiramente casualizado, usando como covariável o índice de produtividade estimado por cinco formas (método de Papadakis). A comparação da análise convencional (blocos ao acaso) com a análise pelo método de Papadakis foi realizada com base nas estimativas do quadrado médio do erro, coeficiente de variação, diferença mínima significativa pelo teste de Tukey, número de grupos formados pelo teste de Scott-Knott e o índice de diferenciação de Fasoulas. O método de Papadakis melhorou a precisão experimental entre 10,5% e 48,1% em relação às diferentes formas de estimação da covariável índice de produtividade, mostrando que a vizinhança mais próxima (unidade experimental de referência e as quatro laterais) é a forma mais eficiente na redução do erro experimental.

Automatic filtering and substantiation of drug safety signals

Drug safety issues pose serious health threats to the population and constitute a major cause of mortality worldwide. Due to the prominent implications to both public health and the pharmaceutical industry, it is of great importance to unravel the molecular mechanisms by which an adverse drug reaction can be potentially elicited. These mechanisms can be investigated by placing the pharmaco-epidemiologically detected adverse drug reaction in an information-rich context and by exploiting all currently available biomedical knowledge to substantiate it. We present a computational framework for the biological annotation of potential adverse drug reactions. First, the proposed framework investigates previous evidences on the drug-event association in the context of biomedical literature (signal filtering). Then, it seeks to provide a biological explanation (signal substantiation) by exploring mechanistic connections that might explain why a drug produces a specific adverse reaction. The mechanistic connections include the activity of the drug, related compounds and drug metabolites on protein targets, the association of protein targets to clinical events, and the annotation of proteins (both protein targets and proteins associated with clinical events) to biological pathways. Hence, the workflows for signal filtering and substantiation integrate modules for literature and database mining, in silico drug-target profiling, and analyses based on gene-disease networks and biological pathways. Application examples of these workflows carried out on selected cases of drug safety signals are discussed. The methodology and workflows presented offer a novel approach to explore the molecular mechanisms underlying adverse drug reactions

The EU-ADR Web Platform: delivering advanced pharmacovigilance tools

PURPOSE: Pharmacovigilance methods have advanced greatly during the last decades, making post-market drug assessment an essential drug evaluation component. These methods mainly rely on the use of spontaneous reporting systems and health information databases to collect expertise from huge amounts of real-world reports. The EU-ADR Web Platform was built to further facilitate accessing, monitoring and exploring these data, enabling an in-depth analysis of adverse drug reactions risks.METHODS: The EU-ADR Web Platform exploits the wealth of data collected within a large-scale European initiative, the EU-ADR project. Millions of electronic health records, provided by national health agencies, are mined for specific drug events, which are correlated with literature, protein and pathway data, resulting in a rich drug-event dataset. Next, advanced distributed computing methods are tailored to coordinate the execution of data-mining and statistical analysis tasks. This permits obtaining a ranked drug-event list, removing spurious entries and highlighting relationships with high risk potential.RESULTS: The EU-ADR Web Platform is an open workspace for the integrated analysis of pharmacovigilance datasets. Using this software, researchers can access a variety of tools provided by distinct partners in a single centralized environment. Besides performing standalone drug-event assessments, they can also control the pipeline for an improved batch analysis of custom datasets. Drug-event pairs can be substantiated and statistically analysed within the platform's innovative working environment.CONCLUSIONS: A pioneering workspace that helps in explaining the biological path of adverse drug reactions was developed within the EU-ADR project consortium. This tool, targeted at the pharmacovigilance community, is available online at https://bioinformatics.ua.pt/euadr/. Copyright © 2012 John Wiley & Sons, Ltd.

Logging versus fire : how does disturbance type influence the abundance of Pinus strobus regeneration?

Abstract

Reduction of ARNT in myeloid cells causes immune suppression and delayed wound healing.

Aryl hydrocarbon receptor nuclear translocator (ARNT) is a transcription factor that binds to partners to mediate responses to environmental signals. To investigate its role in the innate immune system, floxed ARNT mice were bred with lysozyme M-Cre recombinase animals to generate lysozyme M-ARNT (LAR) mice with reduced ARNT expression. Myeloid cells of LAR mice had altered mRNA expression and delayed wound healing. Interestingly, when the animals were rendered diabetic, the difference in wound healing between the LAR mice and their littermate controls was no longer present, suggesting that decreased myeloid cell ARNT function may be an important factor in impaired wound healing in diabetes. Deferoxamine (DFO) improves wound healing by increasing hypoxia-inducible factors, which require ARNT for function. DFO was not effective in wounds of LAR mice, again suggesting that myeloid cells are important for normal wound healing and for the full benefit of DFO. These findings suggest that myeloid ARNT is important for immune function and wound healing. Increasing ARNT and, more specifically, myeloid ARNT may be a therapeutic strategy to improve wound healing.

TWEAK, via its receptor Fn14, is a novel regulator of mesenchymal progenitor cells and skeletal muscle regeneration.

Inflammation participates in tissue repair through multiple mechanisms including directly regulating the cell fate of resident progenitor cells critical for successful regeneration. Upon surveying target cell types of the TNF ligand TWEAK, we observed that TWEAK binds to all progenitor cells of the mesenchymal lineage and induces NF-kappaB activation and the expression of pro-survival, pro-proliferative and homing receptor genes in the mesenchymal stem cells, suggesting that this pro-inflammatory cytokine may play an important role in controlling progenitor cell biology. We explored this potential using both the established C2C12 cell line and primary mouse muscle myoblasts, and demonstrated that TWEAK promoted their proliferation and inhibited their terminal differentiation. By generating mice deficient in the TWEAK receptor Fn14, we further showed that Fn14-deficient primary myoblasts displayed significantly reduced proliferative capacity and altered myotube formation. Following cardiotoxin injection, a known trigger for satellite cell-driven skeletal muscle regeneration, Fn14-deficient mice exhibited reduced inflammatory response and delayed muscle fiber regeneration compared with wild-type mice. These results indicate that the TWEAK/Fn14 pathway is a novel regulator of skeletal muscle precursor cells and illustrate an important mechanism by which inflammatory cytokines influence tissue regeneration and repair. Coupled with our recent demonstration that TWEAK potentiates liver progenitor cell proliferation, the expression of Fn14 on all mesenchymal lineage progenitor cells supports a broad involvement of this pathway in other tissue injury and disease settings.