Geochemistry and isotopes at DSDP Leg 80 Holes

Thirty-eight samples from DSDP Sites 549 to 551 were analyzed for major and minor components and trace element abundances. Multivariate statistical analysis of geochemical data groups the samples into two major classes: an organic-carbon- rich group (> 1% TOC) containing high levels of marine organic matter and certain trace elements (Cu, Zn, V, Ni, Co, Ba, and Cr) and an organic-carbon-lean group depleted in these components. The greatest organic and trace metal enrichments occur in the uppermost Albian to Turanian sections of Sites 549 to 551. Carbon-isotopic values of bulk carbonate for the middle Cenomanian section of Site 550 (2.35 to 2.70 per mil) and the upper Cenomanian-Turonian sections of Sites 549 (3.35 to 4.47 per mil) and 551 (3.13 to 3.72 per mil) are similar to coeval values reported elsewhere in the region. The relatively heavy d13C values from Sites 549 and 551 indicate that this interval was deposited during the global "oceanic anoxic event" that occurred at the Cenomanian/Turonian boundary. Variation in the d18O of bulk carbonate for Section 550B-18-1 of middle Cenomanian age suggests that paleosalinity and/or paleotemperature variations may have occurred concurrently with periodic anoxia at this site. Climatically controlled increases in surface-water runoff may have caused surface waters to periodically freshen, resulting in stable salinity stratification

Iridium and other element concentrations and magnetostratigraphy across the Cretaceous/Tertiarty boundary in ODP Hole 122-761C

Samples from Ocean Drilling Program Hole 761C, collected on both sides of the Cretaceous/Tertiary boundary have been analyzed for their chemical and mineralogical content. The sediment consists of nannofossil ooze with variable amounts of clay. The boundary is marked by a color change associated with a nearly step-like decrease of the carbonate fraction. Paleomagnetic data and the drop of the carbonate content indicate that a strong reduction of the sedimentation rate occurred at the boundary and persisted for million of years. An iridium anomaly of 80 ng/cm**2, together with overabundances of Cr and Fe, are found in close coincidence with the planktonic crisis. These enrichments can be explained by the infall of =0.16 g/cm2 of Cl-like chondritic material. Co and Ni enrichments and a great quantity of Ni-rich magnetites are also observed in the basal Danian. These elements and minerals excepted, the composition of the insoluble fraction appears to be nearly unchanged across the boundary. Chemical and mineralogical observations support a cosmic origin for the Cretaceous/Tertiary event but do not reveal the presence of any significant impact ejecta.

Geochemistry and mineralogy of variably altered dacite volcanic rocks from ODP Leg 193 sites, PACMANUS field

A geochemical, mineralogical, and isotopic database comprising 75 analyses of Ocean Drilling Program (ODP) Leg 193 samples has been prepared, representing the variable dacitic volcanic facies and alteration types observed in drill core from the subsurface of the PACMANUS hydrothermal system (Table T1. The data set comprises major elements, trace and rare earth elements (REE), various volatiles (S, F, Cl, S, SO4, CO2, and H2O), and analyses of 18O and 86Sr/87Sr for bulk rock and mineral separates (anhydrite). Furthermore, normative mineral proportions have been calculated based on the results of X-ray diffraction (XRD) analysis (Table T2) using the SOLVER function of the Microsoft Excel program. Several of the samples analyzed consist of mesoscopically distinctive domains, and separate powders were generated to investigate these hand specimen-scale heterogeneities. Images of all the samples are collated in Figure F1, illustrating the location of each powder analyzed and documenting which measurements were performed.

Microfossils and chemical elements in bottom sediments of the Ashadze-1 Hydrothermal Field (tropical Mid-Atlantic Ridge)

The first thorough analysis of microfossils from ore-bearing sediments of the Ashadze-1 Hydrothermal Field in the Mid-Atlantic Ridge sampled during Cruise 26 of R/V Professor Logachev in 2005 revealed substantial influence of hydrothermal processes on preservation of planktonic calcareous organisms as well as on preservation and composition of benthic foraminifera. From lateral and vertical distribution patterns and secondary alterations of microfossils it is inferred that the main phase of hydrothermal mineralization occurred in Holocene. Heavy metals (Cu, Co, Cr, and Ag) were accumulated by foraminiferal tests and in their enveloping Fe-Mn crusts. Distribution of authigenic minerals replacing foraminiferal tests demonstrates local zoning related to hydrothermal activity. There are three mineral-geochemical zones defined: sulfide zone, zone with elevated Mg content, and zone of Fe-Mn crusts.

Composition of palagonitized basalts, their alteration products, and palagonitized basaltic glasses

Detailed petrochemical and geochemical studies of two samples of palagonitized basalts collected from depths 3060 and 4800 m have shown that palagonitization of tholeiitic basalt is accompanied by intensive removal of Ca and Mg and some removal of SiO2 from rocks. Appreciable amount of K is added to rocks in this process. Behavior of Fe, Al, Ti, Cr, and Na is inert. Palagonitization of alkalic basalt is accompanied by loss of SiO2, Ca, and Na from rocks. Contents of K and Mg are not changed. Four stages can be discerned in alteration of basalts under deep-sea conditions: syngenetic and diffusional palagonitization, hydrothermal leaching, and underwater weathering. Crusts of Fe-Mn ores are formed through removal of Fe, Mn, Ni, Co, Sn, and Mo from rocks and sorption of Pb, Hg, Yb, La, Bi, W, and Be from sea water.

(Table 1) Zoobenthos from the gas-hydrate seep area near the Paramushir Island and its chemical composition

Distributions of Mn, Fe, Cu, Cd, Cr, Co and Ni in sea water are investigated (42 samples, dissolved and particulate forms) in the vicinity of the underwater gas vent field on the northwestern slope of the Paramushir Island. While regular background distributions of the elements occur in the shore zone, there is a column of elevated concentrations of particulate matter, particulate Mn, and dissolved Mn, Fe, Cu, Cd, Cr, Co and Ni that coincides with location of the gas plume. This column can be traced as high as 780 m above the bottom. High metal concentrations in water of the plume are attributable to physico-chemical concentration at the phase interface; the source of elevated mineral concentrations is obviously flux of dissolved minerals from interstitial waters, which extends to considerable distances in vertical direction.

Depth profiles of pore-water and solid-phase constituents, respiration rates and grain size distribution in sediments of the Clarion-Clipperton Fracture Zone

Manganese nodules of the Clarion-Clipperton Fracture Zone (CCFZ) in the NE Pacific Ocean are highly enriched in Ni, Cu, Co, Mo and rare-earth elements, and thus may be the subject of future mining operations. Elucidating the depositional and biogeochemical processes that contribute to nodule formation, as well as the respective redox environment in both, water column and sediment, supports our ability to locate future nodule deposits and evaluates the potential ecological and environmental effects of future deep-sea mining. For these purposes we evaluated the local hydrodynamics and pore-water geochemistry with respect to the nodule coverage at four sites in the eastern CCFZ. Furthermore, we carried out selective leaching experiments at these sites in order to assess the potential mobility of Mn in the solid phase, and compared them with the spatial variations in sedimentation rates. We found that the oxygen penetration depth is 180 - 300 cm at all four sites, while reduction of Mn and NO3- is only significant below the oxygen penetration depth at sites with small or no nodules on the sediment surface. At the site without nodules, potential microbial respiration rates, determined by incubation experiments using 14C-labelled acetate, are slightly higher than at sites with nodules. Leaching experiments showed that surface sediments covered with big or medium-sized nodules are enriched in mobilizable Mn. Our deep oxygen measurements and pore-water data suggest that hydrogenetic and oxic-diagenetic processes control the present-day nodule growth at these sites, since free manganese from deeper sediments is unable to reach the sediment surface. We propose that the observed strong lateral contrasts in nodule size and abundance are sensitive to sedimentation rates, which in turn, are controlled by small-scale variations in seafloor topography and bottom-water current intensity.

Composition and age of ores and bottom sediments accumulated within and near the Rainbow hydrothermal field

Results of direct geological and geochemical observations of the modern Rainbow hydrothermal field (Mid-Atlantic Ridge, 36°14'N; 33°54'W) carried out from the deep-sea manned Mir submersibles during Cruises 41 and 42 of the R/V Akademik Mstislav Keldysh in 1998-1999 and data of laboratory studies of collected samples are under consideration in the paper. The field lacks neovolcanic rocks and the axial part of the rift is filled in with a serpentinite protrusion. In this field there occur metalliferous sediments, as well as active and relict sulfide edifices composed of sulfide minerals; pyrrhotite, chalcopyrite, isocubanite, sphalerite, marcasite, pyrite, bornite, chalcosine, digenite, magnetite, anhydrite, rare troilite, wurtzite, millerite, and pentlandite have been determined. Sulfide ores are characterized by concentric-zoned textures. During in situ measurements during 35 minutes temperature of hydrothermal fluids was varying within a range from 250 to 350°C. Calculated chemical and isotopic composition of hydrothermal fluid shows elevated concentrations of Cl, Ni, Co, CH4, and H2. Values of d34S of H2S range from +2.4 to +3.1 per mil, of d13C of CH4 from -15.2 to -11.2 per mil, and d13C of CO2 from +1.0 to -4.0 per mil. Fluid inclusions are homogenized at temperatures from 140 to 360°C, whereas salinity of the fluid varies from 4.2 to 8.5 wt %. d34S values of sulfides range from +1.3 to +12.5 per mil. 3He/4He ratio in mineral-forming fluid contained in the fluid inclusions from sulfides of the Rainbow field varies from 0.00000374 to 0.0000101. It is shown that hydrothermal activity in the area continues approximately during 100 ka. It is assumed that the fluid and sulfide edifices contain components from the upper mantle. A hypothesis of phase separation of a supercritical fluid that results in formation of brines is proposed. Hydrothermal activity is related to the tectonic, not volcanic, phase of the Mid-Atlantic Ridge evolution.

Concentrations of dissolved and particulate heavy metals in waters above the northwestern slope of the Paramushir Island (Sea of Okhotsk)

Distributions of Mn, Fe, Cu, Cd, Cr, Co and Ni in sea water are investigated (42 samples, dissolved and particulate forms) in the vicinity of the underwater gas vent field on the northwestern slope of the Paramushir Island. While regular background distributions of the elements occur in the shore zone, there is a column of elevated concentrations of particulate matter, particulate Mn, and dissolved Mn, Fe, Cu, Cd, Cr, Co and Ni that coincides with location of the gas plume. This column can be traced as high as 780 m above the bottom. High metal concentrations in water of the plume are attributable to physico-chemical concentration at the phase interface; the source of elevated mineral concentrations is obviously flux of dissolved minerals from interstitial waters, which extends to considerable distances in vertical direction.

Mineralogical and geochemical analyses of serpentines from ODP Hole 125-778A

Thirty-five samples from Hole 778A were prepared for X-ray diffraction (XRD) mineralogical analyses and for chemical analyses of major and trace elements. Most of the selected samples were silt- and sand-sized sedimentary serpentinites or microbreccias except for a soft clast of mafic rock, a hard clast of massive serpentinized peridotite, and a pebble of consolidated, undeformed serpentine microbreccia that contained planktonic foraminifers. Both mineralogical and geochemical analyses allow discrimination of three groups among the analyzed samples. These groups correspond to three stratigraphic intervals present along the drilled section. Group A contains the upper samples (lithologic Unit I). These consist of poorly consolidated serpentine muds carrying hard-rock clasts (serpentinized peridotites, metabasalts). They are characterized by the following mineralogical assemblage: serpentine, Fe-oxides and hydroxides, aragonite, and halite. They exhibit variable SiO2, MgO contents, but are characterized by a SiO2/MgO ratio near 1. CaO content is high in relation to development of aragonite. Al2O3 content is low. Relatively high K2O, Na2O, and Sr contents are present, presumably in relation to interactions with seawater. Group B (30-77 mbsf) contains samples exhibiting very homogeneous chemical and mineralogical compositions. They consist of serpentinite microbreccias exhibiting frequent shear structures. Hard-rock clasts are also present (serpentinized peridotites, metabasalts, one possible chert fragment). The mineralogy of the Group B samples is characterized by the presence of serpentine and authigenic minerals: hydroxycarbonates and hydrogrossular. Calcite and chlorite are also present, but all the samples lack aragonite. Their chemical compositions are remarkably similar to compositions of their parent rocks. Group C contains silt- and sand-sized serpentine and serpentine microbreccias, which are locally rich in red clasts, probably strongly altered (oxidized?) mafic fragments. Intervals having clasts of more diverse origin than those higher in the section were recovered. Clast lithology includes serpentinized peridotites, metabasalts, metavolcaniclastite, meta-olivine gabbro, and amphibolite sandstone. Mineralogy and geochemistry reflect these compositions. Serpentine content of the samples is less than in previous groups. Correlatively, sepiolite, palygorskite, and chlorite-smectite are mineral phases present in the analyzed samples. Accessory igneous minerals (amphiboles, pyroxenes, hematite) also were found. The chemical compositions of most of Group C samples differ from that of massive serpentinized peridotites. The main differences are (1) higher SiO2, CaO, TiO2 and Al2O3 contents, (2) a SiO2/MgO ratio greater than 1, and (3) a negative correlation between Al2O3, and MgO, Cr, and Ni. These characteristics suggest new constraints relative to the flow structure of the flank of Conical Seamount.

Whole rock and elements concentrations from IODP Hole 343-C0019E

The microstructures, mineralogy and chemistry of four representative samples collected from cores extracted from the Japan Trench during Integrated Ocean Drilling Project Expedition 343, the Japan Trench Fast Drilling Project (JFAST) have been studied using optical microscopy, TEM, SEM, XRF, XRD and microprobe analyses. The samples provide a transect from relatively undeformed marine sediments in the hanging wall, to the undeformed footwall material, crossing the thrust interface between the Pacific and North American plate, where the fault slipped during the March 2011 Tohoku-Oki earthquake. Our preliminary results suggest that the low strength of JFAST fault gouge material is caused by the high amount of clay minerals (~ 60% smectite, ~ 14 illite). Clay minerals in the décollement (gouge) sample are partly replaced by newly formed manganese oxide, which precipitated from hydrothermal fluids. Dauphine twins were found in quartz grains of the décollement sample suggesting local high stress possible during seismic loading. Other microstructures cannot be assigned unambiguously to co-seismic or a-seismic faulting processes. The observed scaly clay fabric is consistent with observations in many other plate-boundary fault zones. Significant grain size reduction was found in the fault (decollement) zone sample. But a change in lithology of the fault material cannot be ruled out. Microstructures typical for a-seismic deformation like dissolution-precipitation features (e.g. dissolved grain boundaries, mineral alteration) occur in all JFAST core samples, but more frequently in the décollement sample.

Bioaccessibility of heavy metals and risk assessment in urban gardens of Madrid

Human health problems and solutions. Urban gardening has spread worldwide in recent years as it enhances food security and selfsupply and promotes community integration. However urban soils are significantly enriched in trace elements relative to background levels. Exposure to the soil in urban gardens may therefore result in adverse health effects depending on the degree of contact during gardening, infant recreational activities and ingestion of vegetables grown in them. In order to evaluate this potential risk, 36 composite samples were collected from the top 20 cm of the soil of 6 urban gardens in Madrid. The aqua regia (pseudototal) and glycine-extractable (bioaccessible) concentrations of Co, Cr, Cu, Ni, Pb and Zn were determined by atomic absorption spectrophotometry. Additionally, pH, texture, Fe, Ca, and Mn concentrations, and organic matter and calcium carbonate contents were determined in all urban gardens and their influence on trace element bioaccessibility was analyzed.

Bioaccesibilidad de elementos traza en suelos de parques infantiles. Aplicación al análisis de riesgo

En este trabajo doctoral se evaluó la bioaccesibilidad in vitro para As, Co, Cr, Cu, Ni, Pb y Zn (en la fracción menor de 100μm) por tres procedimientos distintos en 32 muestras de suelo superficial, recogidas en 16 parques infantiles de la ciudad de Madrid.. Dos de los métodos de extracción (SBET y extracción con HCl a pH=1.5) reproducen únicamente la fase gástrica, mientras que otro (RIVM) tiene en cuenta un proceso completo de digestión (gástrico+intestinal). La bioaccesibilidad (%) se definió frente a las concentraciones pseudototales de los elementos traza estudiados (agua regia), utilizando un modelo de regresión lineal pasando por el origen. Los dos métodos gástricos ofrecieron resultados similares y consistentes con datos de otros estudios, siendo el orden de bioaccesibilidad As ≈ Cu ≈ Pb ≈ Zn > Co > Ni > Cr, con rangos entre el 63 y el 7%. Para el procedimiento RIVM (gástrico + intestinal) se obtuvieron valores de un orden similar a los obtenidos en fase gástrica para los elementos As, Cu, Pb y Zn (muy similares para el Zn, algo superiores para Cu y Pb, y algo inferiores para As). Por el contrario, la bioaccesibilidad de Co y Cu es, en este caso, muy superior a la resultante de los ensayos en fase gástrica. El orden de bioaccesibilidad es Co ≈ Cu ≈ Pb > As ≈ Cr ≈ Zn, con rangos entre el 42 y el 69%. Los resultados de los tres procedimientos evaluados correlacionan muy intensamente para los elementos traza As, Cu, Pb y Zn, existiendo intensas correlaciones entre casi todos los elementos estudiados para las dos fases gástricas, no siendo así en el ensayo de digestión completa. Se estudiaron algunas propiedades físico-químicas de los suelos muestreados, así como su composición en algunos elementos mayoritarios con el objeto de evaluar su influencia sobre la bioaccesibilidad. Se observa una dependencia de la bioaccesibilidad (%) de distintos elementos respecto a algunas propiedades de los suelos estudiados, tales como: contenido en Fe, Ca (carbonatos) y P, materia orgánica y pH. El contenido en Fe resulta ser muy relevante en cuanto a la bioaccesibilidad obtenida. En todos los casos correlaciona negativamente con el porcentaje de bioaccesibilidad siendo más significativo este fenómeno en el caso de las extracciones en fase gástrica. Se sugiere que dada la baja solubilización de los óxidos de hierro en los medios extractantes empleados hay una fuerte adsorción de complejos aniónicos (metal-anión cloruro) sobre la superficie de estos óxidos de Fe, con la consiguientes disminución de la bioaccesibilidad. En cuanto al contenido en calcio (carbonatos) este dato parece muy relevante si nos referimos a la bioaccesibilidad del As. Efectivamente el As aparece ligado al Ca del suelo y su solubilización en medios ácidos implicaría un aumento de la bioaccesibilidad del As, mientras que su precipitación al pasar a pH básico (fase intestinal) provocaría una disminución de la bioaccesibilidad. La materia orgánica sólo se ha demostrado relevante respecto a los contenidos pseudototales para el Zn. Para el porcentaje de bioaccesibilidad es significativo para muchos elementos en los ensayos en fase gástrica. La influencia del pH de los suelos estudiados sólo parece ser muy significativo en el caso del Cr. Los valores altamente homogéneos del pH de los suelos estudiados sin duda hacen que este parámetro no resulte significativo para más elementos, tal como se desprende de estudios anteriores. ABSTRACT A total of 32 samples of superficial soil were collected from 16 playground areas in Madrid. The in vitro bioaccessibility of As, Co, Cr, Ni, Pb and Zn (fraction below 100μm) was evaluated by means of three extraction processes. Two of them (SBET and HCl-extraction, pH=1.5) simulate the gastric enviroment, while the other one (RIVM) reproduces a gastric+intestinal digestion sequence. Bioaccessibility (%) was compared against pseudo-total concentrations of trace elements studied (aqua regia) with a linear regression model (forced to intercept the origin) Both gastric methods offered very similar and consistent results with data from other studies, with bioaccessibilities following the order: As ≈ Cu ≈ Pb ≈ Zn > Co > Ni > Cr, and ranging from 63% to 7% The values obtained through RIVM (gastric+ intestinal) method are similar to those obtained in gastric environment for elements: As, Cu, Pb and Zn (very similar to Zn, to a higher extent Cu and Pb, and to a lower extent As). On the contrary the bioaccessibility obtained for elements Co and Cu is considerable higher than in gastric environment sequence. Bioaccessibilities follows the order Co ≈ Cu ≈ Pb >As ≈ Cr ≈ Zn, ranging between 42 and 69%. The three procedures used correlate very intensively to trace elements As,Cu, Pb and Zn, existing strong correlations between almost all elements studied for the two gastric environment, not in the case of the complete digestion sequence. Some soil physical – chemical properties selected were studied, as well as their composition in some main elements in order to assess their influence on bioaccessibility. A dependence was observed between different elements bioaccesibility (%) and some soil properties, such as: Fe, Ca (carbonate) content and P, organic matter and pH. Fe content becomes very relevant regarding the bioaccessibility obtained. In all cases it correlated negatively with bioaccessibility percentage being more significant this phenomenon in gastric environment extractions. It is suggested that given the low solubility of iron oxide in the extractant media used there has to be a strong adsorption of anionic complexes (metal – chloride anion) on these Fe oxides surface, with a consequent decrease of bioaccessibility. Regarding calcium (carbonate) content this data seems very relevant referred to As bioaccessibility. Indeed, As appears to be bound to soil Ca and its solubilisation in acid media would increase As bioaccessibility, while its precipitation at basic pH (intestinal environment) would cause a reduction in bioaccessibility. The influence of organic matter only seemed significant for Zn “total” content, while it is significant in terms of gastric bioaccessibility for many elements. Soil pH only seems to be very significant in case of Cr. The highly homogeneous values for soil pH makes the influence of this parameter negligible for the other elements, unlike what has been observed in several previous studies.

Association of Nonribosomal Nucleolar Proteins in Ribonucleoprotein Complexes during Interphase and Mitosis

rRNA precursors are bound throughout their length by specific proteins, as the pre-rRNAs emerge from the transcription machinery. The association of pre-rRNA with proteins as ribonucleoprotein (RNP) complexes persists during maturation of 18S, 5.8S, and 28S rRNA, and through assembly of ribosomal subunits in the nucleolus. Preribosomal RNP complexes contain, in addition to ribosomal proteins, an unknown number of nonribosomal nucleolar proteins, as well as small nucleolar RNA-ribonucleoproteins (sno-RNPs). This report describes the use of a specific, rapid, and mild immunopurification approach to isolate and analyze human RNP complexes that contain nonribosomal nucleolar proteins, as well as ribosomal proteins and rRNA. Complexes immunopurified with antibodies to nucleolin—a major nucleolar RNA-binding protein—contain several distinct specific polypeptides that include, in addition to nucleolin, the previously identified nucleolar proteins B23 and fibrillarin, proteins with electrophoretic mobilities characteristic of ribosomal proteins including ribosomal protein S6, and a number of additional unidentified proteins. The physical association of these proteins with one another is mediated largely by RNA, in that the complexes dissociate upon digestion with RNase. Complexes isolated from M-phase cells are similar in protein composition to those isolated from interphase cell nuclear extracts. Therefore, the predominant proteins that associate with nucleolin in interphase remain in RNP complexes during mitosis, despite the cessation of rRNA synthesis and processing in M-phase. In addition, precursor rRNA, as well as processed 18S and 28S rRNA and candidate rRNA processing intermediates, is found associated with the immunopurified complexes. The characteristics of the rRNP complexes described here, therefore, indicate that they represent bona fide precursors of mature cytoplasmic ribosomal subunits.

Smad proteins function as co-modulators for MEF2 transcriptional regulatory proteins

An emerging theme in transforming growth factor-β (TGF-β) signalling is the association of the Smad proteins with diverse groups of transcriptional regulatory proteins. Several Smad cofactors have been identified to date but the diversity of TGF-β effects on gene transcription suggests that interactions with other co-regulators must occur. In these studies we addressed the possible interaction of Smad proteins with the myocyte enhancer-binding factor 2 (MEF2) transcriptional regulators. Our studies indicate that Smad2 and 4 (Smad2/4) complexes cooperate with MEF2 regulatory proteins in a GAL4-based one-hybrid reporter gene assay. We have also observed in vivo interactions between Smad2 and MEF2A using co-immunoprecipitation assays. This interaction is confirmed by glutathione S-transferase pull-down analysis. Immunofluorescence studies in C2C12 myotubes show that Smad2 and MEF2A co-localise in the nucleus of multinuclear myotubes during differentiation. Interestingly, phospho-acceptor site mutations of MEF2 that render it unresponsive to p38 MAP kinase signalling abrogate the cooperativity with the Smads suggesting that p38 MAP Kinase-catalysed phosphorylation of MEF2 is a prerequisite for the Smad–MEF2 interaction. Thus, the association between Smad2 and MEF2A may subserve a physical link between TGF-β signalling and a diverse array of genes controlled by the MEF2 cis element.