Determination of trace elemental species in periostracum of Cypraea shells

n this work, three Cypraea species (C. talpa, C. tigris and C. zebra) were exhaustively studied. The shells have been separated in the structural layers. The mineralogy, ultra- and micro-structure of each layer were analyzed by Confocal Laser Scanning Microscopy (CLSM), Scanning Electron Microscopy (SEM), X-Ray Diffractometry (XRD) and Raman Spectroscopy (RS). The presence of biologically relevant trace metals (Mn, Co, Fe, Zn, Cr, etc.) has been investigated using Instrumental Neutron Activation Analysis (INAA) and Inductively Coupled Plasma – Mass Spectrometry (ICP-MS) as detection tool. A new method has been developed and optimized to extract and analyze the soluble organic matrix (SOM) of the shell. Although the molecular nature of the SOM is not really known, it contains at least large protein fraction, if not only consists of proteins. The extracted matrices were compared between layers and species using Size Exclusion High Performance Liquid Chromatography coupled with Ultra Violet Spectrometry (SE-HPLC-UV), Gel electrophoresis (GE) and protein quantification tests. For the first time to our knowledge the association of trace elements to the protein in the SOM of the shell was studied using hyphenated on line as well as combined off line techniques and validated through inter-comparison tests between the different methods applied. Interesting correlations between the trace element concentration, the microstructure and the protein content were directly and indirectly detected. The metals Cu, Ni, Co and Zn have shown to bind to the SOM extracted from C. talpa, C. tigris and C. zebra shells. Within the conclusions of this work it was demonstrated that these protein-metal-complexes (or metal containing proteins) change from one layer to the other and are different between the three snails analyzed. In addition, the complexes are clearly related only to certain protein fractions of the SOM, and not to the whole SOM observed. These fractions and show not to be very metal-specific (i.e. some of these fractions bind two or three different metals).

Ossidazione selettiva del 5-idrossimetilfurfurale con catalizzatori Au/Cu supportati su CeO2

I combustibili fossili forniscono oltre il 75% dell’energia mondiale. La crescente richiesta di energie non rinnovabili registrata nel XX secolo ne ha causato il progressivo esaurimento, nonché un aumento continuo del prezzo e dell’impatto ambientale, dato il significativo aumento delle emissioni di CO2 nell’atmosfera. Questi sono i principali motivi che hanno indotto la ricerca ad orientarsi verso lo studio di fonti di energie e prodotti chimici rinnovabili per ridurre il surriscaldamento del globo. L’interesse per tale sfruttamento è particolarmente vivo, in quanto le molecole ottenute risultano già funzionalizzate e questo può portare alla sintesi di prodotti chimici attraverso un limitato numero di stadi, con conseguente riduzione di sottoprodotti. Dalle biomasse si ottengono prodotti con un elevato valore aggiunto, in quanto risultano biodegradabili, biocompatibili e appetibili sul mercato come biologici e naturali, ottenuti a monte da processi catalitici di lavorazione più semplici. Tra le varie molecole di base ottenibili dalle biomasse va annoverato il 5-idrossimetilfurfurale (HMF), un importante composto derivato dalla disidratazione degli zuccheri e dal quale, attraverso un’ossidazione selettiva, si può ottenere l’acido 2,5-furandicarbossilico (FDCA), che può essere considerato un sostituto dell’acido tereftalico per la produzione del polietilentereftalato (PET). L’ossidazione selettiva avviene principalmente mediante catalisi eterogenea, utilizzando catalizzatori a base di oro. Lo scopo di questo lavoro di tesi è stato, quindi, lo studio di reattività e stabilità di catalizzatori utilizzati nella reazione di ossidazione dell’HMF a FDCA. Nella prima parte del lavoro sono stati preparati tali catalizzatori mediante sintesi di sospensioni metalliche nanoparticellari Au-Cu a diverso rapporto molare e loro successiva impregnazione su ossidi di supporto quali CeO2 e TiO2. I sistemi così ottenuti sono poi stati calcinati in aria statica a tre diverse temperature: 200°C, 300°C e 400°C. Il lavoro portato avanti ha avuto come obiettivi principali: • caratterizzazione dei catalizzatori ottenuti tramite analisi BET, XRD, TEM, TPR e analisi termiche TGA/DSC, al fine di effettuare un confronto tra le varie caratterizzazioni in funzione del contenuto di Cu in fase attiva ed in funzione dell’entità del trattamento termico. • studio dell’attività catalitica e stabilità dei catalizzatori preparati nell’ossidazione selettiva in fase liquida del 5-drossimetilfurfurale ad acido 2,5-furandicarbossilico.

Sintesi e caratterizzazione di nanoparticelle bimetalliche Pd/Au E Pd/Cu

I nanomateriali presentano proprietà molto differenti dai corrispondenti materiali bulk; per questo motivo, negli ultimi anni, se ne è sempre più diffuso l’utilizzo. In particolare, recentemente ha suscitato grande interesse l’impiego di nanoparticelle bimetalliche, le cui proprietà ottiche, morfologiche e dimensionali possono essere modulate sulla base della composizione. L’interesse del mondo industriale allo studio di materiali con dimensioni nano-metriche deriva principalmente dalle loro possibili applicazioni su grande scala ed è quindi di fondamentale importanza la messa a punto di metodologie di sintesi versatili, facilmente scalabili ed a basso impatto ambientale. L’ottimizzazione della sintesi è un aspetto molto importante in quanto deve assicurare un accurato controllo di forma, dimensioni e composizione. A tale scopo è stata sviluppata una sintesi a basso impatto ambientale, in acqua, basata sull’azione riducente del sistema glucosio – NaOH, che permette di ottenere nanoparticelle stabili e con dimensioni omogenee. Nel corso dello studio il riscaldamento è stato effettuato mediante un sistema a microonde: una tecnologia affidabile e sicura che permette un riscaldamento rapido ed omogeneo. La tesi ha come scopo:• l’ottimizzazione e la caratterizzazione di nanosospensioni monometalliche di Pd mediante la sintesi già ottimizzata in lavori precedenti per i metalli: Au, Ag e Cu; •lo studio di sistemi bimetallici Pd/Cu e Pd/Au con morfologia di lega, ottenuti per co-riduzione dei sali precursori; •lo studio dell’attività catalitica delle nanoparticelle sintetizzate nella reazione di riduzione del 4-nitrofenolo a 4-amminofenolo mediante NaBH4; •lo studio della supportazione su carbone di Pd/Au per applicazioni elettrocatalitiche. Per poter studiare e valutare l’eventuale presenza di effetti sinergici tra i metalli coinvolti nella sintesi sono stati confrontati sistemi monometallici con sistemi bimetallici a differenti composizioni (Pd/Cu e Pd/Au). In particolare è stato possibile apprezzare un miglioramento delle prestazioni catalitiche per i sistemi bimetallici Pd/Au rispetto ai metalli di partenza, al contrario i sistemi bimetallici Pd/Cu mostrano un peggioramento dell’attività catalitica all’aumentare del contenuto di rame. La nanosospensione Pd/Au risultata con le maggiori prestazioni catalitiche, è stata supportata su carbone per applicazioni nel campo dell’elettrocatalisi. Da uno studio preliminare sulle tecniche di supportazione è emerso che il metodo migliore per depositare le nanoparticelle sul carbone è l’impregnazione fisica.

Oligosilyl- und Stannylderivate des Kupfers

Benzyltris(trimethylsilyl)silan konnte durch Reaktion mit Lithiummethanid oder Alkalimetall-tert-butanolaten (M-OtBu, M = Na, K, Rb, Cs) in die entsprechenden Alkalimetall-benzylbis(trimethylsilyl)silanide (M-Bnz, Bnz = Si(SiMe3)2CH2Ph) überführt werden. Die Strukturen dieser Verbindungen weisen viele Gemeinsamkeiten mit den entsprechenden Hypersilylverbindungen (Hypersilyl bzw. Hyp = Si(SiMe3)3) auf. Mit Ausnahme der Lithiumverbindung weisen die Natrium-, Kalium- und Rubidiumverbindungen jedoch noch intramolekulare Wechselwirkungen des Benzylrestes mit den Alkalimetallkationen auf. Die Benzylbis(trimethylsilyl)silanide der Alkalimetalle eignen sich zur Darstellung von Kupfersilylverbindungen. So konnten heteroleptische Cuprate (Bnz-Cu-OtBu-, Bnz-Cu-Hyp-) und monoleptische Cuprate (CuBnz2-), aber auch das ungeladene Kupfer-benzyl-bis(trimethylsilyl)silanid hergestellt werden. Auf analoge Weise wurde versucht, Alkalimetall- und Kupferverbindungen des Phenylbis(trimethylsilyl)silanides herzustellen. Da aber bereits bei der Synthese der Alkalimetallverbindungen die entsprechenden Hypersilanide als schwer abtrennbare Nebenprodukte entstanden, konnten keine ausführlichen Untersuchungen angestellt werden. Es konnten die Natrium- und Kaliumsalze des Dihypersilylcuprates hergestellt und strukturell charakterisiert werden. Die Natriumverbindung wurde nur als Nebenprodukt einer Reaktion von Kupfer(I)-cyanid mit Natriumhypersilanid erhalten, die entsprechende Kaliumverbindung ließ sich jedoch mit guten Ausbeuten gezielt aus Kupfer(I)-tert-butanolat herstellen. Beide Verbindungen weisen ein hantelförmiges Hyp-Cu-Hyp-Anion auf, die THF- bzw. THP-koordinierten Kationen liegen isoliert vom Anion vor. Eine neue Klasse von Kupfersilylverbindungen konnten durch Reaktion von Kupfer(I)-cyanid mit Alkalimetallhypersilaniden erzeugt werden. Dabei entstehen heteroleptische Cyano-hypersilyl-cuprate. Großen Einfluss auf die Strukturen üben die Alkalimetallkationen und Lösungsmittelmoleküle aus. So findet man bei den Lithiumverbindungen zweikernige Kupferkomplexe, die je nach Lösungsmittelgehalt unterschiedliche Anordnungen der Cyanid- und Hypersilanidanionen aufweisen. Lediglich die Kaliumverbindung weist lineare Cyanid-Kupfer-Hypersilanid-Einheiten auf, wie man sie analog von Organyl-cyano-cupraten kennt. Trotz vieler Gemeinsamkeiten vieler Silyl- und entsprechender Stannylverbindungen bezüglich Struktur und Reaktivität, erwies sich die Darstellung von Kupferstannyl-verbindungen schwieriger als erwartet. Zwar konnte in einer mehrstufigen Reaktion Kupfer-tris(trimethylsilyl)stannanid erhalten werden, auftretende Zwischen- und Nebenprodukte weisen jedoch auf das Auftreten von Umlagerungen und Redoxprozesse hin, die bei entsprechenden Kupfersilylverbindungen nicht beobachtet wurden.

From pyrene to large polycyclic aromatic hydrocarbons

Studies of polycyclic aromatic hydrocarbons have shown that the overall size, periphery, and functionalization of PAHs are crucial parameters which significantly alter their electronic structure and chemical reactivity. Therefore, the major direction of this thesis is the synthesis and characterization of extended PAHs: (i) with different functional groups improving their processability, (ii) with different periphery changing their chemical reactivity, (iii) with inclusions of different metal ions, which influence their physical properties. • The cyclodehydrogenation reaction has been proposed for to synthesise polyphenylene ribbons with preplanarized (dibenzo[e,l]pyrene) moieties in the aromatic core with up to 10 nm linear size. The synthetic strategy employed is discussed in Chapter 2 and is based on stoichiometrically controlled DIELS-ALDER cycloaddition. All molecules possessed very good solubility in common organic solvents allowing their characterization by standard analytical techniques. • A new concept was developed to extend PAH’s core. Here the introduction of “zigzag” sites, discussed in Chpater 3 was shown to lower the HOMO-LUMO gap and to result in higher chemical reactivities. This allowed, in Chapters 3, 4 and 5, further functionalization of PAH and enlargement of their aromatic cores up to 224 atoms. Despite the size of these novel molecules, extraordinary solubilities in common organic solvents were obtained due to distortions from planarity of the aromatic cores by bulky tert-butyl groups, which hampered the usually very pronounced aggregation tendency of extended π-systems. All extended PAHs posses the small HOMO-LUMO gap together with good electron affinities making them potential candidates for application in organic FETs. • Another alternative synthetic route has been proposed to obtain extended the metal-PAH complexes. Using the quinoxaline methodology in Chapter 5 three new phenanthroline ligands (up to 60 skeletal atoms) have been synthesized and characterized. Four different (Ru(II), Cu(II) and Pt(II)) complexes were synthesized, allowing to construct a range of large metal complexes by varying the metal as well as the number and nature of ligands.

Respiratory chain complex I dysfunction in tumorigenesis

Diseases due to mutations in mitochondrial DNA probably represent the most common form of metabolic disorders, including cancer, as highlighted in the last years. Approximately 300 mtDNA alterations have been identified as the genetic cause of mitochondrial diseases and one-third of these alterations are located in the coding genes for OXPHOS proteins. Despite progress in identification of their molecular mechanisms, little has been done with regard to the therapy. Recently, a particular gene therapy approach, namely allotopic expression, has been proposed and optimized, although the results obtained are rather controversial. In fact, this approach consists in synthesis of a wild-type version of mutated OXPHOS protein in the cytosolic compartment and in its import into mitochondria, but the available evidence is based only on the partial phenotype rescue and not on the demonstration of effective incorporation of the functional protein into respiratory complexes. In the present study, we took advantage of a previously analyzed cell model bearing the m.3571insC mutation in MTND1 gene for the ND1 subunit of respiratory chain complex I. This frame-shift mutation induces in fact translation of a truncated ND1 protein then degraded, causing complex I disassembly, and for this reason not in competition with that allotopically expressed. We show here that allotopic ND1 protein is correctly imported into mitochondria and incorporated in complex I, promoting its proper assembly and rescue of its function. This result allowed us to further confirm what we have previously demonstrated about the role of complex I in tumorigenesis process. Injection of the allotopic clone in nude mice showed indeed that the rescue of complex I assembly and function increases tumor growth, inducing stabilization of HIF1α, the master regulator of tumoral progression, and consequently its downstream gene expression activation.

Geochemistry, petrogenesis and tectonic setting of ophiolites and mafic-ultramafic complexes in the Northeastern Aegean Region

In this study two ophiolites and a mafic-ultramafic complexes of the northeastern Aegean Sea, Greece, have been investigated to re-evaluate their petrogenetic evolution and tectonic setting. These complexes are: the mafic-ultramafic complex of Lesvos Island and the ophiolites of Samothraki Island and the Evros area. In order to examine these complexes in detail whole-rock major- and trace-elements as well as Sr and Nd isotopes, and minerals were analysed and U-Pb SHRIMP ages on zircons were determined. The mafic-ultramafic complex of Lesvos Island consists of mantle peridotite thrusted over a tectonic mélange containing metasediments, metabasalts and a few metagabbros. This succession had previously been interpreted as an ophiolite of Late Jurassic age. The new field and geochemical data allow a reinterpretation of this complex as representing an incipient continental rift setting that led to the subsequent formation of the Meliata-Maliac-Vardar branches of Neotethys in Upper Permian times (253 ± 6 Ma) and the term “Lesvos ophiolite” should be abandoned. With proceeding subduction and closure of the Maliac Ocean in Late Jurassic times (155 Ma) the Lesvos mafic-ultramafic complex was obducted. Zircon ages of 777, 539 and 338 Ma from a gabbro strongly suggest inheritance from the intruded basement and correspond to ages of distinct terranes recently recognized in the Hellenides (e.g. Florina terrane). Geochemical similar complexes which contain rift associations with Permo-Triassic ages can be found elsewhere in Greece and Turkey, namely the Teke Dere Thrust Sheet below the Lycian Nappes (SW Turkey), the Pindos subophiolitic mélange (W Greece), the Volcanosedimentary Complex on Central Evia Island (Greece) and the Karakaya Complex (NW Turkey). This infers that the rift-related rocks from Lesvos belong to an important Permo-Triassic rifting episode in the eastern Mediterranean. The ‘in-situ’ ophiolite of Samothraki Island comprises gabbros, sparse dykes and basalt flows as well as pillows cut by late dolerite dykes and had conventionally been interpreted as having formed in an ensialic back-arc basin. The results of this study revealed that none of the basalts and dolerites resemble mid-ocean ridge or back-arc basin basalts thus suggesting that the Samothraki ophiolite cannot represent mature back-arc basin crust. The age of the complex is regarded to be 160 ± 5 Ma (i.e. Oxfordian; early Upper Jurassic), which precludes any correlation with the Lesvos mafic-ultramafic complex further south (253 ± 6 Ma; Upper Permian). Restoration of the block configuration in NE Greece, before extensional collapse of the Hellenic hinterland and exhumation of the Rhodope Metamorphic Core Complex (mid-Eocene to mid-Miocene), results in a continuous ophiolite belt from Guevgueli in the NW to Samothraki in the SE, thus assigning the latter to the Innermost Hellenic Ophiolite Belt. In view of the data of this study, the Samothraki ophiolite represents a rift propagation of the Sithonia ophiolite spreading ridge into the Chortiatis calc-alkaline arc. The ophiolite of the Evros area consists of a plutonic sequence comprising cumulate and non-cumulate gabbros with plagiogranite veins, and an extrusive sequence of basalt dykes, massive and pillow lavas as well as pyroclastic rocks. Furthermore, in the Rhodope Massif tectonic lenses of harzburgites and dunites can be found. All rocks are spatially separated. The analytical results of this study revealed an intra-oceanic island arc setting for the Evros ophiolitic rocks. During late Middle Jurassic times (169 ± 2 Ma) an intra-oceanic arc has developed above a northwards directed intra-oceanic subduction zone of the Vardar Ocean in front of the Rhodope Massif. The boninitic, island arc tholeiitic and calc-alkaline rocks reflect the evolution of the Evros island arc. The obduction of the ophiolitic rocks onto the Rhodope basement margin took place during closure of the Vardar ocean basins. The harzburgites and dunites of the Rhodope Massif are strongly depleted and resemble harzburgites from recent oceanic island arcs. After melt extraction they underwent enrichment processes by percolating melts and fluids from the subducted slab. The relationship of the peridotites and the Evros ophiolite is still ambiguous, but the stratigraphic positions of the peridotites and the ophiolitic rocks indicate separated origin. The harzburgites and dunites most probably represent remnants of the mantle wedge of the island arc of the Rhodope terrane formed above subducted slab of the Nestos Ocean in late Middle Jurassic times. During collision of the Thracia terrane with the Rhodope terrane thrusting of the Rhodope terrane onto the Thracia terrane took place, whereas the harzburgites and dunites were pushed between the two terranes now cropping out on top of the Thracia terrane of the Rhodope Massif.

Luminescent Ionic Transition-Metal Complexes for Light-Emitting Electrochemical Cells

The European Union set the ambitious target of reducing energy consumption by 20% within 2020. This goal demands a tremendous change in how we generate and consume energy and urgently calls for an aggressive policy on energy efficiency. Since 19% of the European electrical energy is used for lighting, considerable savings can be achieved with the development of novel and more efficient lighting systems. In this thesis, accomplished in the frame of the EU project CELLO, I report some selected goals we achieved attempting to develop highly efficient, flat, low cost and flexible light sources using Light-Emitting Electrochemical Cells (LECs), based on ionic cyclometalated iridium(III) complexes. After an extensive introduction about LECs and solid-state lighting in general, I focus on the research we carried out on cyclometalated iridium(III) complexes displaying deep-blue emission, which has turned out to be a rather challenging task. In order to demonstrate the wide versatility of this class of compounds, I also report a case in which some tailored iridium(III) complexes act as near-infrared (NIR) sources. In fact, standard NIR emitting devices are typically expensive and, also in this case, LECs could serve as low-cost alternatives in fields were NIR luminescence is crucial, such as telecommunications and bioimaging. Since LECs are based on only one active material, in the last chapter I stress the importance of an integrated approach toward the right selection of suitable emitters not only from the photophysical, but also from the point of view of material science. An iridium(III) complex, once in the device, is interacting with ionic liquids, metal cathodes, electric fields, etc. All these interactions should be taken in to account if Europe really wants to implement more efficient lighting paradigms, generating light beyond research labs.

New functionalized ligands for luminescent metal complexes: from design to applications

The synthesis of luminescent metal complexes is a very challenging task since they can be regarded as the starting point for a lot of different areas. Luminescent complexes, in fact, can be used for technological, industrial, medical and biological applications. During my PhD I worked with different metals having distinguishing intrinsic properties that make them different from each other and, in particular, more or less suitable for the different possible uses. Iridium complexes show the best photophysical properties: they have high quantum yields, very long lifetimes and possess easily tunable emissions throughout the visible range. On the other hand, Iridium is very expensive and scarcely available. The aim of my work concerning this metal was, therefore, to synthesize ligands able not only to form luminescent complexes, but also able to add functionalities to the final complex, increasing its properties, and therefore its possible practical uses. Since Re(I) derivatives have been reported to be suitable as probes in biological system, and the use of Re(I) reduces the costs, the synthesized bifunctional ligands containing a pyridine-triazole and a biotin unit were employed to obtain new Re(I) luminescent probes. Part of my work involved the design and synthesis of new ligands able to form stable complexes with Eu(III) and Ce(III) salts, in order to obtain an emission in the range of visible light: these two metals are quite cheap and relatively non-toxic compared to other heavy metals. Finally, I plan to synthesize organic derivatives that already possessed an emission thanks to the presence of other many chromophoric groups and can be able to link the Zinc (II), a low cost and especially non-toxic “green” metal. Zinc has not its own emission, but when it sticks to ligands, it increases their photophysical properties.

Transport properties of YBa 2 Cu 3 O 7, PrBa 2 Cu 3 O 7-superlattices

The understanding of the coupling between superconducting YBa2Cu3O7 (YBCO) layers decoupled by non superconducting PrBa2Cu3O7 (PBCO) layers in c-axis oriented superlattices was the aim of this thesis. For this purpose two conceptually different kind of transport experiments have been performed. rnrnIn the first type of transport experiments the current is flowing parallel to the layers. Here the coupling is probed indirectly using magnetic vortex lines, which are penetrating the superlattice. Movement of the vortex segments in neighbouring YBCO layers is more or less coherent depending on the thickness of both the superconducting and non superconducting layers. This in-plane transport was measured either by sending an external current through bridges patterned in the superlattice or by an induced internal current. rnThe vortex-creep activation energy U was determined by analysis of the in-plane resistive transition in an external magnetic field B oriented along the c-axis. The activation energies for two series of superlattices were investigated. In one series the thickness of the YBCO layers was constant (nY=4 unit cells) and the number of the PBCO unit cells was varied, while in the other the number of PBCO layers was constant (nP=4) and nY varied. The correlation length of the vortex system was determined to be 80 nm along the c-axis direction. It was found that even a single PBCO unit cell in a superlattice effectively cuts the flux lines into shorter weakly coupled segments, and the coupling of the vortex systems in neighbouring layers is negligible already for a thickness of four unit cells of the PBCO layers. A characteristic variation of the activation energy for the two series of superlattices was found, where U0 is proportional to the YBCO thickness. A change in the variation of U0 with the current I in the specimen was observed, which can be explained in terms of a crossover in the vortex creep process, generated by the transport current. At low I values the dislocations mediated (plastic) vortex creep leads to thermally assisted flux-flow behaviour, whereas at high current the dc transport measurements are dominated by elastic (collective) creep.rnThe analysis of standard dc magnetization relaxation data obtained for a series superlattices revealed the occurrence of a crossover from elastic (collective) vortex creep at low temperature to plastic vortex creep at high T. The crossover is generated by the T dependent macroscopic currents induced in the sample. The existence of this creep crossover suggests that, compared with the well known Maley technique, the use of the normalized vortex creep activation energy is a better solution for the determination of vortex creep parameters.rnrnThe second type of transport experiments was to measure directly a possible Josephson coupling between superconducting CuO2 double planes in the superlattices by investigation of the transport properties perpendicular to the superconducting planes. Here three different experiments have been performed. The first one was to pattern mesa structures photolithographically as in previous works. The second used three-dimensional nanostructures cut by a focused ion beam. For the these two experiments insufficient patterning capabilities prevented an observation of the Josephson effect in the current voltage curves. rnA third experiment used a-axis and (110) oriented YBCO films, where in-plane patterning can in principle be sufficient to measure transport perpendicular to the superconducting planes. Therefore the deposition of films with this unusual growth orientation was optimized and investigated. The structural and microstructural evolution of c-axis to a-axis orientation was monitored using x-ray diffraction, scanning electron microscopy and magnetization measurements. Films with full a-axis alignment parallel to the substrate normal could be achieved on (100)SrTiO3. Due to the symmetry of the substrate the c-axis direction in-plane is twofold. Transferring the deposition conditions to films grown on (110)SrTiO3 allowed the growth of (110) oriented YBCO films with a unique in-plane c-axis orientation. While these films were of high quality by crystallographic and macroscopic visual inspection, electron microscopy revealed a coherent crack pattern on a nanoscale. Therefore the actual current path in the sample was not determined by the macroscopic patterning which prohibited investigations of the in-plane anisotropy in this case.rn

Valutazione del rischio ambientale associato alla presenza di metalli pesanti (Cd, Cu, Ni, Pb, Zn) nei sedimenti della Pialassa dei Piomboni.

I metalli pesanti presenti nei sedimenti marini possono essere rilasciati alla colonna d’acqua, in seguito a variazioni delle condizioni ambientali, ed entrare nelle catene trofiche degli organismi marini. A partire da una serie di campioni di sedimenti superficiali provenienti dalla Pialassa dei Piomboni (sito SIC-ZPS, a nord della Provincia di Ravenna), prelevati tra novembre e dicembre del 2012, è stato valutato il rischio potenziale associato alla presenza di metalli pesanti (Cd, Cu, Ni, Pb e Zn) per il biota residente nei sedimenti. È stato valutato il comportamento del rapporto SEM/AVS (contenuto di metalli simultaneamente estratti (SEM) e solfuri acidi volatili (AVS)) per ciascuno dei metalli oggetto dello studio. La metodica analitica ha previsto il trattamento dei campioni con HCl 6M, sotto flusso di azoto, e successivamente la lettura del contenuto di solfuro (raccolto in soluzioni di NaOH) e dei metalli pesanti allo spettrometro. Dal valore dei parametri chimico-fisici ottenuti nel momento del campionamento, è evidente che la zona interna della laguna risulta meno influenzata dalle maree rispetto a quella lungo il canale di navigazione. Le concentrazioni di metalli potenzialmente biodisponibili hanno evidenziato una distribuzione eterogenea. Del set di campioni analizzati, soltanto tre presentano un contenuto totale di metalli potenzialmente biodisponibili superiore al contenuto di solfuri labili (∑SEM/AVS>1), per cui la presenza di metalli bivalenti potrebbe rappresentare un rischio per il biota. Come suggerito da diversi autori, si è proceduto con l’ulteriore normalizzazione del rapporto (∑SEM/AVS) con il contenuto di carbonio organico relativo ad ogni campione di sedimento, escludendo possibili rischi associati alla presenza di metalli pesanti.

Mitochondrial respiratory supercomplex association limits production of reactive oxygen species from Complex I

Evidence accumulated in the last ten years has demonstrated that a large proportion of the mitochondrial respiratory chain complexes in a variety of organisms is arranged in supramolecular assemblies called supercomplexes or respirasomes. Besides conferring a kinetic advantage (substrate channeling) and being required for the assembly and stability of Complex I, indirect considerations support the view that supercomplexes may also prevent excessive formation of reactive oxygen species (ROS) from the respiratory chain. Following this line of thought we have decided to directly investigate ROS production by Complex I under conditions in which the complex is arranged as a component of the supercomplex I1III2 or it is dissociated as an individual enzyme. The study has been addressed both in bovine heart mitochondrial membranes and in reconstituted proteoliposomes composed of complexes I and III in which the supramolecular organization of the respiratory assemblies is impaired by: (i) treatment either of bovine heart mitochondria or liposome-reconstituted supercomplex I-III with dodecyl maltoside; (ii) reconstitution of Complexes I and III at high phospholipids to protein ratio. The results of this investigation provide experimental evidence that the production of ROS is strongly increased in either model; supporting the view that disruption or prevention of the association between Complex I and Complex III by different means enhances the generation of superoxide from Complex I . This is the first demonstration that dissociation of the supercomplex I1III2 in the mitochondrial membrane is a cause of oxidative stress from Complex I. Previous work in our laboratory demonstrated that lipid peroxidation can dissociate the supramolecular assemblies; thus, here we confirm that preliminary conclusion that primary causes of oxidative stress may perpetuate reactive oxygen species (ROS) generation by a vicious circle involving supercomplex dissociation as a major determinant.

Isolierung und Charakterisierung der ER-residenten Aminopeptidase ERMP1 und Untersuchung ihrer Funktion in der Prozessierung MHC I restringierter CTL Epitope

Die effiziente Generierung von Peptid-Epitopen aus zelleigenen oder viralen Proteinen für die Präsentation auf „Major Histocompatibility Complex I“ (MHC I) Molekülen ist essentiell für die Aktivierung des adaptiven Immunsystems und die Effektorfunktion der CD8+ zytotoxischen T-Zellen (CTLs). CTLs erkennen diese Peptide in Kontext mit MHC I Molekülen über ihren spezifischen T-Zellrezeptor (TCR). Die Generierung dieser Epitope ist das Resultat eines komplexen proteolytischen Prozesses, der im Zytosol und im endoplasmatischen Retikulum (ER) stattfindet. Im Zytosol generiert das Proteasom N-terminal verlängerte Epitop-Vorläufer. Diese werden durch weitere zytosolische Proteasen abgebaut, es sei denn, sie werden durch den „transporter associated with antigen processing“ (TAP) in das ER transportiert. Dort werden sie durch Aminopeptidasen getrimmt, um den Bindungsvoraussetzungen der MHC I Moleküle zu genügen. Im murinen System ist die „ER aminopeptidase associated with antigen processing“ (ERAAP) die bislang einzige beschriebene Aminopeptidase, die dieses N-terminale Trimming von CTL Epitopen vermitteln kann. Das Profil der proteolytischen Aktivität in angereichertem murinen ER kann jedoch nicht allein durch die Aktivität von ERAAP erklärt werden, was auf die Anwesenheit weiterer Aminopeptidasen mit einer potentiellen Funktion in der Antigenprozessierung hinweist. In dieser Arbeit konnte die immunologisch bislang noch nicht beschriebene Aminopeptidase ERMP1 (endoplasmic reticulum metallopeptidase 1) im murinen ER identifiziert werden. Nach Aufreinigung muriner Mikrosomen und anschließender Anionenaustausch-Chromatographie wurden die gesammelten Fraktionen mit fluorogenen Substraten auf Aminopeptidase-Aktivität getestet. Durch massenspektrometrische Analyse konnten in den beobachteten Peaks die schon beschriebenen Aminopeptidasen ERAAP, die „insulin regulated aminopeptidase“ IRAP und die immunologisch bislang nicht beschriebene Aminopeptidase ERMP1 identifiziert werden. Durch Fluoreszenzmikroskopie konnte die intrazelluläre Lokalisation von ERMP1 im ER durch Kolokalisation mit TAP verifiziert werden. Wie viele Komponenten des MHC I Prozessierungsweges wird auch die Expression von ERMP1 durch IFN-γ stimuliert. Dies macht ERMP1 zu einer potentiellen zweiten trimmenden Aminopeptidase im murinen ER. Überexpression von ERMP1 hat einen allelspezifischen Einfluss auf die globale MHC I Präsentation auf der Zelloberfläche und durch Überexpression und shRNA vermitteltes gene silencing konnte außerdem ein epitopspezifischer Effekt nachgewiesen werden. Da N-terminales Trimming durch ERAAP mit der Evasion von Tumoren und veränderter Immundominanz assoziiert wird, ist die detaillierte Charakterisierung der Aminopeptidase ERMP1 ein wichtiger Schritt zum Verständnis der MHC I Antigen-Prozessierung und der Generierung von CTL Epitopen im ER.

Formation of DNA complexes in aqueous and organic solvents

From a physical-chemical point of view, it is challenging to form complexes with polyelectrolytes, consisting of only molecule of the largest component, i.e. the component with the highest number of charges. In this study, complexes are formed with DNA because of its potential applications as an artificial vector for gene delivery. The aim of this work is to prepare complexes in aqueous solutions as well as in organic solvents containing only one DNA molecule. For this purpose, the topology, equilibrium and conformation of complexes between a supercoiled DNA pUC19 (2686 base pairs) and spermine containing hydrophilic and/or hydrophobic moieties or a polylysine with a hydrophilic block are determined by means of dynamic (DLS) and static light scattering (SLS), atomic force microscopy (AFM), and circular dichroism (CD) spectroscopy. It is demonstrated that all of these complexes consisted of only one molecule of the polyanion. Only the polylysine-b-polyethylene glycol copolymer satisfied the conditions: 1) 100% neutralization of DNA charges and with a small excess of the cation (lower than 30%) and 2) form stable complexes at every charge ratio. rnDNA complex formation is also investigated in organic solvents. Precipitation is induced by neutralizing the charge of the supercoiled DNA pUC19 with the surfactants dodecyltrimethylammonium bromide (DTAB) and tetradecyltrimethylammonium bromide (TTAB). After isolation and drying of the solids, the complexes are dissolved in organic solvents. DNA-TTA complexes are only soluble in methanol and DNA-DTA in DMF. The complexes again consisted of only one DNA molecule. The final topology of the complexes is different in methanol than in DMF. In the former case, DNA seems to be compacted whereas in the latter case, the DNA-DTA complexes seem to have an expanded conformation. Upon complex formation with polycations in organic solvents (with polyvilylpyridine brush (b-PVP) in methanol and with a protected polylysine in DMF), DNA aggregates and precipitates. rnDNA is linearized with an enzyme (SmaI) to investigate the influence of the initial topology of the polyanion on the final conformation of the complexes in organic solvents. Two main differences are evidenced: 1. Complexes in organic solvents formed with linear DNA have in general a more expanded conformation and a higher tendency to aggregate. 2. If a polycation, i.e. the b-PVP, is added to the linear DNA-TTA complexes in methanol, complexes with the polycation are formed at a higher charge ratio. In DMF, the addition of the same b-PVP and of b-PLL did not lead to the formation of complexes.rn

Interactions of G-quadruplex binders and Topoisomerase I inhibitors in cancer cells

Top1-DNA cleavage complexes (Top1ccs) trigger an accumulation of antisense RNAPII transcripts specifically at active divergent CpG-island promoters in a replication independent and Top1 dependent manner, leading to transcription-dependent genome instability and altered transcription regulation. Using different cancer cell lines of colon and osteo origins, we show that they display different sensitivity to CPT and G4 binder that is independent from Top1 level. To look at the interactions between Top1 and G4, we show that co-treatment with G4 binders potentiate the cell cytotoxicity of CPT regardless of the treatment sequences. Potentiation is indicated by a reduced inhibition concentration (IC50) with a more profound cytotoxicity in CPT-resistant cell lines, HCT15 and U2OS, hence, indicating an interaction between Top1inhibitor and G4 binders. Moreover, computational analysis confirmed the present of G4 motifs in genes with CPT-induced antisense transcription. G4 motifs are present mostly 5000 bp upstream from transcription start site and notably lower in genes. Comparisons between genes with no antisense transcription and genes with antisense transcription show that G4 motifs in this region are notably lower in the genes with antisense transcripts. Since CPT increases negative supercoils at promoters of intermediate activity, the formation of G4 is also increased in CPT-treated cells. Suprisingly, formation of G4 is regulated in parallel to the transient stabilization of R-loops, indicating a role in response to CPT-induced stress. G4 formation is highly elevated in Pyridostatin treated cells, which previous study shows increased formation of γH2Ax foci. This effect is also seen in the CPT-resistant cell lines, HCT15, indicating that the formation is a general event in response to CPT. We also show that R-loop formation is greatly increased in Pyridostatin treated cells. In order to study the role of R-loops and G4 structures in Top1cc-dependant repair pathway, we inhibited tyrosyl-phosphodiestrase 1 (TDP-1) using a TDP-1 inhibitor.