Production of biodiesel from the resources endogeneous of Timor Leste

Os biocombustíveis têm estado na linha da frente das políticas energéticas mundiais visto que as suas vantagens conseguem colmatar as incertezas e resolver alguns dos problemas associados aos combustíveis fósseis. O biodiesel tem provado ser um combustível muito fiável, alternativo ao petrodiesel. É uma mistura de ésteres alquílicos produzidos a partir de óleos vegetais e gorduras animais através de uma reacção de transesterificação. Como combustível, o biodiesel é economicamente viável, socialmente responsável, tecnicamente compatível e ambientalmente amigável. O principal desafio associado ao seu desenvolvimento tem a ver com a escolha de matéria-prima para a sua produção. Nos países do terceiro mundo, óleos alimentares são mais importantes para alimentar pessoas do que fazer funcionar carros. Esta tese tem como objectivos produzir/processar biodiesel a partir de recursos endógenos de Timor-Leste e medir/prever as propriedades termodinâmicas do biodiesel, a partir das dos esteres alquílicos. A síntese do biodiesel a partir dos óleos de Aleurites moluccana, Jatropha curcas e borras de café foram aqui estudados. As propriedades termodinâmicas como densidade, viscosidade, tensão superficial, volatilidade e velocidade do som também foram medidas e estimadas usando modelos preditivos disponíveis na literatura, incluindo as equações de estado CPA e soft-SAFT. Timor-Leste é um país muito rico em recursos naturais, mas a maioria da população ainda vive na pobreza e na privação de acesso a serviços básicos e condições de vida decentes. A exploração de petróleo e gás no mar de Timor tem sido controlado pelo Fundo Petrolífero. O país ainda carece de electricidade e combustíveis que são cruciais para materializar as políticas de redução da pobreza. Como solução, o governo timorense criou recentemente o Plano Estratégico de Desenvolvimento a 20 anos cujas prioridades incluem trazer o desenvolvimento do petróleo do mar para a costa sul de Timor-Leste e desenvolver as energias renováveis. É neste último contexto que o biodiesel se insere. O seu desenvolvimento no país poderá ser uma solução para o fornecimento de electricidade, a criação de empregos e sobretudo o combate contra a pobreza e a privação. Para ser usado como combustível, no entanto, o biodiesel deve possuir propriedades termodinâmicas coerentes com as especificadas nas normas da ASTM D6751 (nos Estados Unidos) ou EN 14214 (na Europa) para garantir uma adequada ignição, atomização e combustão do biodiesel no motor.

Mitochondrial plasticity in pathophysiological conditions

Both skeletal and cardiac muscles daily burn tremendous amounts of ATP to meet the energy requirements for contraction. So, it is not surprising that the maintenance of mitochondrial morphology, number, distribution and functionality in striated muscle are important for muscle homeostasis. In these tissues mitochondria present the added dimension of two populations, the intermyofibrillar (IMF) and the subsarcolemmal (SS) mitochondria, being IMF the most abundant one. In the present thesis, the molecular mechanisms harboured in mitochondria of striated muscles were studied using animal models, to better comprehend the role of mitochondrial plasticity in several pathophysiological conditions such as aging, diabetes mellitus and bladder cancer. The comparative analysis of IMF and SS populations isolated from heart evidenced a higher respiratory chain activity of mitochondria interspersed in the contractile apparatus. The higher susceptible of SS respiratory chain complexes subunits to carbonylation, but not to nitration, seems to justify the lower respiratory chain activity observed in this mitochondrial population. Our results showed that in heart from aged mice there is an accumulation of dysfunctional mitochondria. The age-related decrease of oxidative phosphorylation activity seems to be justified, at least partially, by the increased proneness of mitochondrial proteins as OXPHOS subunits and MnSOD to oxidative modifications. Moreover, a sedentary lifestyle seems to worsen the functional consequences of aging in heart by increasing mitochondrial proteins susceptibility to nitration. In skeletal muscle from rats with type 1 diabetes mellitus induced by streptozotocin administration, we verified the accumulation of dysfunctional mitochondria due, at least in part, to the impairment of PQC system. Indeed, the decreased activity of AAA proteases was accompanied by the accumulation of oxidatively modified mitochondrial proteins with impact in respiratory chain activity. The diminishing of mitochondria activity also underlies cancer-induced muscle wasting. Indeed, using a rat model of chemically induced urothelial carcinoma we verified that the loss of gastrocnemius mass was related to mitochondrial dysfunction due to, at least partially, the down-regulation of PQC system involving the mitochondrial proteases paraplegin and Lon. PQC impairment resulted in the accumulation of oxidatively modified mitochondrial proteins. In overall, regardless the pathophysiological stimuli that promote mitochondrial alterations, there are similarities in the pattern of disease-related mitochondrial plasticity. The diminished capacity for ATP production in striated muscle seems to be due to increased oxidative damage of mitochondrial proteins, namely subunits of respiratory chain complexes, metabolic proteins and MnSOD. Our data highlighted, for the first time, the impact of mitochondrial PQC system impairment in the accumulation of oxidized proteins, exacerbating the dysfunction of this organelle in striated muscle in several pathophysiological conditions.

All-optical routing functionalities

All-optical solutions for switching and routing packet-based traffic are crucial for realizing a truly transparent network. To meet the increasing requirements for higher bandwidth, such optical packet switched networks may require the implementation of digital functions in the physical layer. This scenario stimulated us to research and develop innovative high-speed all-optical storage memories, focusing mainly on bistables whose state switching is triggered by a pulsed clock signal. In clocked devices, a synchronization signal is responsible for controlling the enabling of the bistable. This thesis also presents novel solutions to implement optical logic gates, which are basic building blocks of any processing system and a fundamental element for the development of complex processing functionalities. Most of the proposed schemes developed in this work are based on SOA-MZI structures due to their inherent characteristics such as, high extinction ratio, high operation speed, high integration capability and compactness. We addressed the experimental implementation of an all-optical packet routing scheme, with contention resolution capability, using interconnected SOAMZIs. The impact on the system performance of the reminiscent power of the blocked packets, from the non ideal switching performed by the SOA-MZIs, was also assessed.

Ecology and conservation of felids in the Brazilian pantanal

Habitat conversion and environmental degradation have reached alarming levels in the Pantanal, endangering all its biodiversity. This scenario is complicated by the fact that the biome relies on only a few protected areas, which combined do not exceed 10% of the territory. Felids, as predators, play a vital role in the maintenance of this ecosystem, but require large areas, have low population densities and, typically, are very sensitive to environmental disturbances. Amolar Mountain Ridge is considered an area of extreme importance and high priority for conservation within the biome. There are four species of felids in this region: the jaguar (Panthera onca), the puma (Puma concolor), the ocelot (Leopardus pardalis), and jaguarundi (Puma yagouaroundi). However, little is known about the ecology of these species in this region or the magnitude of interaction between the communities living around the protected areas and the animals. The goal of this study was to increase our knowledge about these felids and understand how people interact with them in order to contribute to their conservation in the network of parks within Amolar. Camera trapping surveys were carried out in two areas of the network, covering approximately 83,000 hectares, in order to identify the species of mammals occurring in the region, those that may be potential prey for the felids, and to obtain basic ecological data about both felids and prey. In addition, we conducted surveys in three riverside schools in order to assess the knowledge, perceptions and attitudes of schoolchildren regarding the four focal felids, and surveys among the adult population to assess their perceptions and attitudes towards the jaguar. We recorded a total of 33 species of mammals from both study areas. The large cats were cathemeral, reflecting the temporal activity of larger prey, whereas the ocelot was nocturnal, mirroring the activity of smaller prey. Jaguar occupancy was influenced by prey abundance, while puma occupancy was influenced by patch density in drier dense forest. Jaguars and pumas may be competitors over temporal and spatial scales, while no resource overlap was found for ocelots. Overall, both adults and children tended to have negative perceptions about the cats, which were related to the fear of being attacked. To increase awareness about the species and to maximize the effectiveness of protective measures in the network of reserves, it is recommended to develop and implement an Environmental Educational Program in the medium- to long-term in order to minimize the fear of these felids and to counsel locals on the role of felids in the maintenance of the Pantanal’s biodiversity.

Metais em plantas e algas : acumulação e potencial aplicação em processos de remediação

The present work reports the study of the bioaccumulation of potentially toxic elements (cadmium, lead and mercury) by marine macroalgae (Ulva lactuca, Fucus vesiculosus and Gracilaria gracilis), abundant in the coast and estuarine systems worldwide. These organisms proved to be capable of withstanding moderate multi-metallic contamination (environmentally relevant concentrations), incorporating high amounts of metal in their tissues. The high removal percentages achieved, in particular for mercury (99%), demonstrate the potential of these algae as a basis for a new biotechnological treatment of saline waters contaminated with metals (more efficient, cost-effective and environmentally friendly than conventional methods). U. lactuca was considered the most promising due to the better performance presented. The comparison between the bioaccumulation and biosorption processes suggested that in some cases the use of the living organism will have advantages over the application of biomass, due to the simplicity of the overall process, and the lower residual concentration of metal achieved in the solution (especially for Cd). The transfer and accumulation of Hg by terrestrial plants (Brassica juncea and Lolium perenne) in agricultural fields near a contaminated industrial area was also studied. Despite the low bioaccumulation factors found (<1), there were high Hg content in plants (up to 84 mg kg-1 in roots and up 6.9 mg kg-1 in shoots, dry weight). Daily intake estimates for grazing animals (cows and sheep) pointed to the potential risk to human health derived from consumption of their meat. The results highlighted the important role that plants and algae may have in protection, risk assessment and remediation of environmental systems contaminated with metals.

Trends in deep-water shark fisheries in the Azores

Deep-sea resources have been increasingly exploited, and due to that, several ecosystems and species have been considerably affected. Deep-water sharks populations have been of the most disturbed by practices of unselected fisheries, bycatch and discard, mainly due to their low commercial value. Those practices make deep-water sharks very vulnerable to overfishing given their life-history traits, increasing their extinction risk. With the prohibition of the direct fishery, and implementation of quotas and TACs (Total Allowable Catches) regarding the deep-sea shark landings, the official landings have dramatically decreased after the 1990s. However, the IUU (Illegal, unreported and unregulated) catch has exponentially increased. With the analysis of catch per unit effort (CPUE), the depths, and the mean weight of the individuals over the years for each one of the nine most caught species in the Azores, we produced a descriptive analysis of the effect of fisheries in those species. The results show that some of these species have been suffering from a great fishing pressure, and their populations will be greatly affected in the near future if drastic measures are not taken when it comes to managing their long term sustainability.

Impact of exercise training on cancer-induced cardiac dysfunction

Cachexia is a complex syndrome characterized by severe weight loss frequently observed in cancer patients and associated with poor prognosis. Cancer cachexia is also related to modifications in cardiac muscle structure and metabolism leading to cardiac dysfunction. In order to better understand the cardiac remodeling induced by bladder cancer and the impact of exercise training after diagnosis on its regulation, we used an animal model of bladder cancer induced by exposition to N-butyl-N-(4-hydroxybutyl)-nitrosamine (BBN) in the drinking water. Healthy animals and previously BBN exposed animals were submitted to a training program in a treadmill at a speed of 20m/min, 60 min/day, 5 days/week during 13 weeks. At the end of the protocol, animals exposed to BBN presented a significant decrease of body weight, in comparison with control groups, supporting the presence of cancer cachexia. Morphological analysis of the cardiac muscle sections revealed the presence of fibrosis and a significant decrease of cardiomyocyte’s cross-sectional area, suggesting the occurrence of cardiac dysfunction associated with bladder cancer. These modifications were accompanied by heart metabolic remodeling characterized by a decreased fatty acid oxidation given by diminished levels of ETFDH and of complex II subunit  from the respiratory chain. Exercise training promoted an increment of connexin 43, a protein involved in cardioprotection, and of c-kit, a protein present in cardiac stem cells. These results suggest an improved heart regenerative capacity induced by exercise training. In conclusion, endurance training seems an attractive non-pharmacological therapeutic option for the management of cardiac dysfunction in cancer cachexia.

Antioxidantes em frutos e vegetais

O oxigénio é um elemento necessário à sobrevivência da maioria dos seres vivos. Contudo, este pode revelar-se tóxico, provocando a oxidação e a destruição celular. Em consequência desta oxidação formam–se, a partir do oxigénio molecular (O2), grupos de átomos extremamente reactivos – os radicais livres. A oxidação, tanto dos tecidos animais como dos tecidos vegetais, pode ocorrer tanto como resultado do simples metabolismo celular aeróbio formando os designados radicais livres endógenos, como também pelas agressões externas ao organismo que levam à formação dos radicais livres exógenos (Plummer, 1989).

Efeito da substituição da farinha de peixe por farinha de algas Gracilaria sp. e Ulva rigida no crescimento e nos parâmetros metabólicos da dourada (Sparus aurata)

Dissertação mestr., Engenharia Biológica, Universidade do Algarve, 2008

Biocaumulação de alumínio em rebentos micropropagados de Plantago sp.

Dissertação de Mestrado, Engenharia Biológica, Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2009

Aplicação de técnicas de conservação in vitro para a conservação de espécies ameaçadas

Dissertação mest., Engenharia Biológica, Universidade do Algarve, 2008

Endocrine regulation of extracellular matrix proteins in calcified tissue in teleost fish

Tese dout., Biologia, Universidade do Algarve, 2005

Efeito do cloro no desenvolvimento e na tiróide da Tilápia Moçambicana (Oreochromis mossambicus)

Dissertação mest., Biotecnologia, Universidade do Algarve, 2009

Da Serra de Tavira ao Rif marroquino: analogias e mitos

Dissertação de mest., Cultura Árabe e Islâmica e o Mediterrâneo, Faculdade de Ciências Humanas e Sociais, Universidade do Algarve, 2007

Estudo do efeito de contaminantes na espécie sentinela, a amêijoa Ruditapes decussatus, por intermédio da análise da expressão proteica: aplicação à monitorização do meio marinho

Tese dout., Ciências e Tecnologias do Ambiente, 2009, Universidade do Algarve