Clustering in non-parametric multivariate analyses.

Non-parametric multivariate analyses of complex ecological datasets are widely used. Following appropriate pre-treatment of the data inter-sample resemblances are calculated using appropriate measures. Ordination and clustering derived from these resemblances are used to visualise relationships among samples (or variables). Hierarchical agglomerative clustering with group-average (UPGMA) linkage is often the clustering method chosen. Using an example dataset of zooplankton densities from the Bristol Channel and Severn Estuary, UK, a range of existing and new clustering methods are applied and the results compared. Although the examples focus on analysis of samples, the methods may also be applied to species analysis. Dendrograms derived by hierarchical clustering are compared using cophenetic correlations, which are also used to determine optimum  in flexible beta clustering. A plot of cophenetic correlation against original dissimilarities reveals that a tree may be a poor representation of the full multivariate information. UNCTREE is an unconstrained binary divisive clustering algorithm in which values of the ANOSIM R statistic are used to determine (binary) splits in the data, to form a dendrogram. A form of flat clustering, k-R clustering, uses a combination of ANOSIM R and Similarity Profiles (SIMPROF) analyses to determine the optimum value of k, the number of groups into which samples should be clustered, and the sample membership of the groups. Robust outcomes from the application of such a range of differing techniques to the same resemblance matrix, as here, result in greater confidence in the validity of a clustering approach.

Clustering in non-parametric multivariate analyses.

Non-parametric multivariate analyses of complex ecological datasets are widely used. Following appropriate pre-treatment of the data inter-sample resemblances are calculated using appropriate measures. Ordination and clustering derived from these resemblances are used to visualise relationships among samples (or variables). Hierarchical agglomerative clustering with group-average (UPGMA) linkage is often the clustering method chosen. Using an example dataset of zooplankton densities from the Bristol Channel and Severn Estuary, UK, a range of existing and new clustering methods are applied and the results compared. Although the examples focus on analysis of samples, the methods may also be applied to species analysis. Dendrograms derived by hierarchical clustering are compared using cophenetic correlations, which are also used to determine optimum  in flexible beta clustering. A plot of cophenetic correlation against original dissimilarities reveals that a tree may be a poor representation of the full multivariate information. UNCTREE is an unconstrained binary divisive clustering algorithm in which values of the ANOSIM R statistic are used to determine (binary) splits in the data, to form a dendrogram. A form of flat clustering, k-R clustering, uses a combination of ANOSIM R and Similarity Profiles (SIMPROF) analyses to determine the optimum value of k, the number of groups into which samples should be clustered, and the sample membership of the groups. Robust outcomes from the application of such a range of differing techniques to the same resemblance matrix, as here, result in greater confidence in the validity of a clustering approach.

Judaísmo y judaísmos: una realidad plural y compleja

En este artículo se presenta una visión panorámica de la situación actual del judaísmo así como de los principales problemas y desafíos que afronta en la actualidad. De manera especial se reflexiona sobre el concepto de identidad judía, pues son muchas y diferentes las respuestas a las preguntas ¿quién es judío? y ¿qué significa ser judío?

Learning for self-regulation: Improving instructional benefits for pupils, teachers, parents, schools, and society at large

Compulsory education laws oblige primary and secondary schools to give each pupil positive encouragement in, for example, social, emotional, cognitive, creative, and ethical respects. This is a fairly smooth process for most pupils, but it is not as easy to achieve with others. A pattern of pupil, home or family, and school variables turns out to be responsible for a long-term process that may lead to a pupil’s dropping out of education. A systemic approach will do much to introduce more clarity into the diagnosis, potential reduction and possible prevention of some persistent educational problems that express themselves in related phenomena, for example low school motivation and achievement; forced underachievement of high ability pupils; concentration of bullying and violent behaviour in and around some types of classes and schools; and drop-out percentages that are relatively constant across time. Such problems have a negative effect on pupils, teachers, parents, schools, and society alike. In this address, I would therefore like to clarify some of the systemic causes and processes that we have identified between specific educational and pupil characteristics. Both theory and practice can assist in developing, implementing, and checking better learning methods and coaching procedures, particularly for pupils at risk. This development approach will take time and require co-ordination, but it will result in much better processes and outcomes than we are used to. First, I will diagnose some systemic aspects of education that do not seem to optimise the learning processes and school careers of some types of pupils in particular. Second, I will specify cognitive, social, motivational, and self-regulative aspects of learning tasks and relate corresponding learning processes to relevant instructional and wider educational contexts. I will elaborate these theoretical notions into an educational design with systemic instructional guidelines and multilevel procedures that may improve learning processes for different types of pupils. Internet-based Information and Communication Technology, or ICT, also plays a major role here. Third, I will report on concrete developments made in prototype research and trials. The development process concerns ICT-based differentiation of learning materials and procedures, and ICT-based strategies to improve pupil development and learning. Fourth, I will focus on the experience gained in primary and secondary educational practice with respect to implementation. We can learn much from such practical experience, in particular about the conditions for developing and implementing the necessary changes in and around schools. Finally, I will propose future research. As I hope to make clear, theory-based development and implementation research can join forces with systemic innovation and differentiated assessment in educational practice, to pave the way for optimal “learning for self-regulation” for pupils, teachers, parents, schools, and society at large.

L’ichtyofaune dans l’organisation biologique d’un système paralique de type lagunaire, la Ria d’Aveiro (Portugal), en 1987-1988 et 1999-2000

Cette étude concerne un écosystème paralique, la lagune d’Aveiro (Portugal). Elle vise à déterminer l’organisation des peuplements de poissons en fonction des caractéristiques et du fonctionnement de cet écosystème. L’ichtyofaune a été échantillonnée mensuellement en 10 stations d’août 1987 à juillet 1988 et de janvier 1999 à décembre 2000, avec une seine de plage traditionnelle. La répartition des peuplements de poissons est étudiée au moyen de descripteurs populationnels (richesses spécifique et familiale, densité, biomasse et indice de diversité) et d’analyses statistiques (groupements et ordination). La lagune d’Aveiro présente de fortes variations, dans l’espace et le temps, de ses paramètres physico- chimiques reflétant ainsi les variations climatiques annuelles. Si l’on considère la mobilité des poissons et la géomorphologie et l’hydrologie du système étudié, nous pouvions nous attendre à une forte homogénéité de la distribution des poissons. À l’inverse, une diminution de l’influence marine a pour conséquence une diminution des richesses spécifiques et familiales, de la densité et de la biomasse. Nous avons également observé une modification de composition de l’assemblage de poissons et la présence d’espèces dominantes caractéristiques des différents niveaux de confinement (taux de renouvellement des eaux marines en un point donné du système). Le peuplement de poissons présente une organisation semblable à la zonation biologique, indépendamment des paramètres physico-chimiques tels que la salinité, décrite par la macrofaune benthique et induite par le confinement. La comparaison des résultats avec des données obtenues douze ans plus tôt, montre que l’organisation générale de la lagune est demeurée inchangée, illustrant ainsi la stabilité des écosystèmes paraliques. De plus, des modifications du niveau de confinement dans les marges nord et sud, induites principalement par des changements locaux de l’hydrodynamisme, ont été constatées. Le déconfinement de la zone nord est la conséquence de l’entretien des canaux de navigation par dragage. À l’inverse, le confinement de la zone sud est l’évolution naturelle des bassins paraliques soumis souvent à une sédimentation élevée et rapide. Cette étude montre que l’organisation du peuplement de poissons valide le concept du confinement pour l’organisation biologique des milieux paraliques, et peut être employé pour expliquer les changements de ces écosystèmes.

Typologie biosédimentaire de la baie de Saint-Brieuc (Manche ouest), et estimation de la biomasse des catégories trophiques macrozoobenthiques.

The aim of this report is to provide biomass estimates (AFDW, g.m-2 ) of the four main components of the benthic food web in the southern part of the Bay of St-Brieuc: suspension-feeders, deposit-feeders, herbivores and carnivores. Patterns in the environmental data (i.e., sedimentary characters) are first analysed, and then related to the spatial distribution of communities ; both approaches use classical ordination techniques (PCA, correspondence analysis). A second typology, based on a review of published litterature concerning coastal macrozoobenthos feeding, ascribes each taxonomic unit to a trophic group. Finally, quantitative results are thus given per biota ; suspension-feeders appear to dominate (in terms of biomass) most of fine-sand habitats of the studied area.

Estrutura da comunidade arbórea e suas relações com fatores edáficos na floresta de restinga paludosa da Estrada Velha, Rio Grande, Rio Grande do Sul

(Estrutura da comunidade arbórea e suas relações com fatores edáficos na floresta de restinga paludosa da estrada Velha, Rio Grande, Rio Grande do Sul). O presente estudo tem como objetivo estudar a estrutura da comunidade arbórea da floresta de restinga paludosa da Estrada Velha (32º07’S; 52º09’W) localizada no município do Rio Grande, na Planície Costeira do Rio Grande do Sul e suas correlações com fatores edáficos. Para a amostragem do componente arbóreo foram demarcadas três transecções paralelas, ao longo das quais foram alocadas 30 unidades amostrais de 10m X 10m, de forma não contígua e amostrados todos os indivíduos com perímetro a altura do peito maior ou igual a 15 cm. Foram coletadas amostras de solo para análises químicas e granulométricas e realizadas medidas da coluna d’água nas unidades amostrais. Os principais parâmetros fitossociológicos foram estimados para descrever a estrutura da floresta, bem como os índices de Diversidade de Shannon (H’) e de Equabilidade de Pielou (J’). A similaridade com outras florestas no Rio Grande do Sul foi estimada pelo índice de Jaccard (ISj). As relações entre a abundância das espécies nas unidades amostrais e fatores edáficos foram avaliadas por meio de análise de componentes principais (PCA) e análise de correspondência canônica (CCA). Foram registrados 585 indivíduos distribuídos em 19 espécies, 17 gêneros e 16 famílias. A família com maior riqueza específica foi Moraceae e as espécies com maiores valores de importância foram Citronela gongonha (Mart.) R.A. Howard, Erythrina crista-galli L., Sebastiania brasiliensis Spreng., Ficus cestrifolia Schott. e Syagrus romanzoffiana (Cham.) Glassman. O Índice de diversidade foi 1,99 nat.ind-1 e o de Equabilidade foi 0,68. As análises multivariadas de ordenação evidenciaram um gradiente de distribuição das espécies correlacionado principalmente com a densidade de C. gongonha e fatores edáficos como pH, Ca, CTC(t), MO, K e nível de alagamento. O componente arbóreo mostrou similaridade florística (ISj) com outras florestas paludosas localizadas em maiores latitudes no Estado.

Investigating bias in recreational fishing surveys: Fishers listed in public telephone directories fish similarly to their unlisted counterparts

Several recent offsite recreational fishing surveys have used public landline telephone directories as a sampling frame. Sampling biases inherent in this method are recognised, but are assumed to be corrected through demographic data expansion. However, the rising prevalence of mobile-only households has potentially increased these biases by skewing raw samples towards households that maintain relatively high levels of coverage in telephone directories. For biases to be corrected through demographic expansion, both the fishing participation rate and fishing activity must be similar among listed and unlisted fishers within each demographic group. In this study, we tested for a difference in the fishing activity of listed and unlisted fishers within demographic groups by comparing their avidity (number of fishing trips per year), as well as the platform used (boat or shore) and species targeted on their most recent fishing trip. 3062 recreational fishers were interviewed at 34 tackle stores across 12 residential regions of Queensland, Australia. For each fisher, data collected included their fishing avidity, the platform used and species targeted on their most recent trip, their gender, age, residential region, and whether their household had a listed telephone number. Although the most avid fishers were younger and less likely to have a listed phone number, cumulative link models revealed that avidity was not affected by an interaction of phone listing status, age group and residential region (p > 0.05). Likewise, binomial generalized linear models revealed that there was no interaction between phone listing, age group and avidity acting on platform (p > 0.05), and platform was not affected by an interaction of phone listing status, age group, and residential region (p > 0.05). Ordination of target species using Bray-Curtis dissimilarity indices found a significant but irrelevant difference (i.e. small effect size) between listed and unlisted fishers (ANOSIM R < 0.05, p < 0.05). These results suggest that, at this time, the fishing activity of listed and unlisted fishers in Queensland is similar within demographic groups. Future research seeking to validate the assumptions of recreational fishing telephone surveys should investigate fishing participation rates of listed and unlisted fishers within demographic groups.

Comunidades zooplanctônicas como bioindicadoras da qualidade da água de quatro reservatórios da região semi-árida do Rio Grande do Norte

The response of zooplankton assemblages to variations in the water quality of four man-made lakes, caused by eutrophication and siltation, was investigated by means of canonical correspondence analysis. Monte Carlo simulations using the CCA eingenvalues as test statistics revealed that changes in zooplankton species composition along the environmental gradients of trophic state and abiogenic turbidity were highly significant. The species Brachionus calyciflorus, Thermocyclops sp. and Argyrodiaptomus sp. were good indicators of eutrophic conditions while the species Brachionus dolabratus, Keratella tropica and Hexarthra sp. were good indicators of high turbidity due to suspended sediments. The rotifer genus Brachionus was the most species-rich taxon, comprising five species which were associated with different environmental conditions. Therefore, we tested whether this genus alone could potentially be a better biological indicator of these environmental gradients than the entire zooplankton assemblages or any other random set of five species. The ordination results show that the five Brachionus species alone did not explain better the observed pattern of environmental variation than most random sets of five species. Therefore, this genus could not be selected as a target taxon for more intensive environmental monitoring as has been previously suggested by Attayde and Bozelli (1998). Overall, our results show that changes in the water quality of man-made lakes in a tropical semi-arid region have significant effects on the structure of zooplankton assemblages that can potentially affect the functioning of these ecosystems

FLORÍSTICA E ESTRUTURA DO COMPONENTE ARBÓREO E RELAÇÃO COM VARIÁVEIS AMBIENTAIS EM UM REMANESCENTE FLORESTAL EM CAMPOS NOVOS - SC

O presente estudo objetivou conhecer os padrões da composição florística e estrutural do componente arbóreo de um trecho de remanescente de Floresta Ombrófila Mista Montana em Campos Novos - SC e determinar as variáveis ambientais que influenciam estes padrões. Para isso, foi amostrado 1 ha de floresta por meio de 50 parcelas de 10 × 20 m dispostas de forma sistemática, distanciada 30 m entre si, no remanescente florestal. Dentro das parcelas foram identificados e mensurados (circunferência medida a altura do peito, CAP, e altura total) CAP, e altura total) todos os indivíduos arbóreos vivos com CAP ≥ 15,7 cm. Os dados ambientais relacionados às propriedades químicas e físicas dos solos e à topografia também foram coletados em cada parcela. Foram calculados o índice de Shannon-Wiener (H’), a equabilidade de Pielou (J’) e os estimadores fitossociológicos. A organização florístico-estrutural do fragmento foi analisada por meio de uma NMDS (Nonmetric multidimensional scalling). As variáveis ambientais foram ajustadas a posteriori à ordenaçã o produzida, sendo aquelas significativas (p < 0,05) plotadas na forma de vetores. Foram amostrados 1.027 indivíduos, que totalizaram uma área basal de 43,57 m2, distribuídos em 88 espécies e 41 famílias botânicas. A diversidade do remanescente estudado foi relativamente alta (H’=3,59) e a dominância baixa (J’=0,80). A espécie de maior VI foi Araucaria angustifolia (Bertol.) Kuntze (14,44%). A análise multivariada NMDS indicou um gradiente florístico-estrutural relacionado à cota média (altitude), saturação de bases, pH e teores de P nos solos.

Experiences of care and adjustment to change in caregivers of children with autoimmune encephalitis: an interpretative phenomenological analysis

Background: Autoimmune encephalitis (AE) occurs in response to an antibody-mediated central nervous system disease and can lead to significant neurodisability. Prior research on family adjustment has described a reciprocal relationship between caregiver functioning, distress and clinical outcome in parents and children with encephalitis. There has been no previous research exploring the experiences of caregivers with a child with AE. Aims: To explore the perspectives of parents and/or caregivers with a child diagnosed with AE regarding (i) their own adjustment from hospital admission to post-discharge, and (ii) their experiences of care and service provision. Methods: A purposive sampling approach was used. Five parents of children with AE participated in a semi-structured interview exploring their experiences of caring for their child and service provision during acute care and post-discharge. Interpretative Phenomenological Analysis (IPA) was used to analyse the transcripts. Main findings and conclusions: Four shared super-ordinate themes with related subthemes emerged: (a) uncertainty, (b) managing our recovery, (c) changes in my child, (d) experiences of service provision. Participants reported emotional distress, often underpinned by recurrent experiences of uncertainty, and ‘loss’ of the previous child, and mediated by coping strategies and social support. While an overall positive experience of inpatient services was reported, parents often perceived post-discharge services as lacking in co-ordination, communication and formal follow-up, resulting in unmet support needs. Implications and recommendations for services, practitioners and future research are discussed.

The Rite of the ‘for the Psalmist’

En el presente artículo llevamos a cabo la edición del ritual de ordenación del Salmista según dos manuscritos del siglo XIV. Ofrecemos una descripción completa de los manuscritos y de su contexto arqueológico.