Microbiota and Microsatellite genotypes of Pacific oysters stemming from three oyster bed in the Northern Wadden Sea

Background: Studies of oyster microbiomes have revealed that a limited number of microbes, including pathogens, can dominate microbial communities in host tissues such as gills and gut. Much of the bacterial diversity however remains underexplored and unexplained, although environmental conditions and host genetics have been implicated. We used 454 next generation 16S rRNA amplicon sequencing of individually tagged PCR reactions to explore the diversity of bacterial communities in gill tissue of the invasive Pacific oyster Crassostrea gigas stemming from genetically differentiated beds under ambient outdoor conditions and after a multifaceted disturbance treatment imposing stress on the host. Results: While the gill associated microbial communities in oysters were dominated by few abundant taxa (i.e. Sphingomonas, Mycoplasma) the distribution of rare bacterial groups correlated to relatedness between the hosts under ambient conditions. Exposing the host to disturbance broke apart this relationship by removing rare phylotypes thereby reducing overall microbial diversity. Shifts in the microbiome composition in response to stress did not result in a net increase in genera known to contain potentially pathogenic strains. Conclusion: The decrease in microbial diversity and the disassociation between population genetic structure of the hosts and their associated microbiome suggest that disturbance (i.e. stress) may play a significant role for the assembly of the natural microbiome. Such community shifts may in turn also feed back on the course of disease and the occurrence of mass mortality events in oyster populations.

Diatoms on the lower surface of Arctic sea ice and hydrochemical parameters in the water-ice layer

Morphology, ecology, range and species composition of diatom algae mass accumulations that are biotypically associated with the lower surface of Arctic sea ice are discussed. Materials were obtained by skindivers in the Central Arctic Basin at drift stations SP-23 in August 1977 and SP-22 in July 1980.

(Table 2) Actual and synthetic mass accumulation rate data and their absolute differences for ODP Site 115-707

Synthetic mass accumulation rates have been calculated for ODP Site 707 using depth-density and depth-porosity functions to estimate values for these parameters with increasing sediment thickness, at 1 Ma time intervals determined on the basis of published microfossil datums. These datums were the basis of the age model used by Peterson and Backman (1990, doi:10.2973/odp.proc.sr.115.163.1990) to calculate actual mass accumulation rate data using density and porosity measurements. A comparison is made between the synthetic and actual mass accumulation rate values for the time interval 37 Ma to the Recent for 1 Myr time intervals. There is a correlation coefficient of 0.993 between the two data sets, with an absolute difference generally less than 0.1 g/cm**2/kyr. We have used the method to extend the mass accumulation rate analysis back to the Late Paleocene (60 Ma) for Site 707. Providing age datums (e.g. fossil or magnetic anomaly data) are available the generation of synthetic mass accumulation rates can be calculated for any sediment sequence.

Feeding parameters of copepods from upwelling areas

Feeding patterns of mass herbivorous copepods in upwelling areas are investigated. Daily rations and aspects of their formation are examined in Calanoides carinatus (Benguela upwelling), Calanus pacificus (off the California coast), and Calanus australis (Peru upwelling). Rations were calculated based on gut plant pigment contents obtained at daily stations using laser spectrofluorometry, experimental data on the rate of gut evacuation and data on the carbon/chlorophyll ratio in phytoplankton and particulate matter at the respective stations. When phytoplankton was abundant, diel feeding rhythms were not pronounced and gut pigment level was high during the entire 24-h period. When phytoplankton biomass was low, distinct feeding rhythms were pronounced with a nocturnal maximum. During active upwelling intensive feeding on phytoplankton supports energy (respiration) and plastic (growth, development, reproduction, accumulation of reserves) metabolism of copepods. When upwelling was inactive, the surface part of the population feeds less actively and is able only partially to cover its energy expenditures. The actively growing and reproducing populations of C. pacificus and C. carinatus may consume close to 20% of primary production, whereas the inactive population of C. australis consumed only 0.2% of primary production when upwelling weakened.

Granulometry, biogenic silica content, magnetic susceptibility and bulk densities of ODP Site 188-1165

The Prydz Bay area is a key region for studying and understanding the history of the eastern Antarctic Continental Ice Sheet (O'Brien, Cooper, Richter, et al., 2001, doi:10.2973/odp.proc.ir.188.2001). Ocean Drilling Program (ODP) Site 1165 is situated in a water depth of 3357 m on the continental rise offshore from Prydz Bay and lies in front of the outlet for the Lambert Glacier-Amery Ice Shelf system that today drains 22% of East Antarctica. The site was drilled into mixed pelagic and hemipelagic sediments from the southwestern side of the Wild Drift. The drift is an elongate sediment body formed by the interaction of sediment supplied from continental shelf and slope with westward-flowing bottom currents. The sedimentary sequence is characterized by alternations between a generally gray to dark gray facies and a green to greenish gray facies. The greenish facies are structureless diatom-bearing clays with common bioturbation and larger amounts (>15%-20%) of biogenic silica, dispersed clasts, and lonestones than the dark gray facies, which are mostly less bioturbated clay with some silt laminations (Shipboard Scientific Party, 2001, doi:10.2973/odp.proc.ir.188.103.2001). High-quality advanced piston corer and extended core barrel cores containing nearly complete sections of middle Miocene to early Pliocene age allow a detailed characterization of sedimentary cycles and can provide indications for ice advances of the Lambert Glacier system into Prydz Bay, for the extent of sea ice, and for changes in oceanic circulation. The purpose of this work is to provide a data set of coarse-fraction mass percentage (>63, >125, and >250 µm) and biogenic silica content measured on sediments of late Miocene to early Pliocene age drilled at Site 1165. Additionally, high-resolution records of magnetic susceptibility (MS) and gamma ray attenuation (GRA) bulk density are presented. These shipboard data sets were edited postcruise. Furthermore, I provide a high-resolution dry bulk density record that is derived from GRA bulk density and can be used for the calculation of mass accumulation rates. These sedimentological and physical parameters will be used in future work to understand the depositional pattern of alternating biogenic and terrigenous sediments that was observed at Site 1165 (Shipboard Scientific Party, 2001, doi:10.2973/odp.proc.ir.188.103.2001).

Physiological and biochemical characteristics of Calanoides carinatus in waters off the coast of Namibia

Biochemical composition, feeding and oxygen uptake rate of mass planktic copepod Calanoides carinatus were studied off the coast of Namibia in January 1986. Population of this species in the area had two parts: the surface group inhabiting the 0-100 m layer and the deep part inhabiting depths greater than 200 m. Individuals in the surface and deep parts of the population differed in food content of guts, lipid content of bodies, oxygen uptake rate and behavior. Differences in biochemical composition and rate of physiological processes indicate that individuals in the deep part of the population are in diapause. Nature of changes in biochemical composition of C. carinatus in surface and deep waters in relation to life cycle characteristics in upwelling waters are discussed.

Glacier mass balance measurements on Fourcade and Polar Club glacier, King George Island

The east coast of the AP is highly influenced by cold and dry air masses stemming from the adjacent Weddell Sea. By the contrary, the west coast jointly with the South Shetland Islands are directly exposed to the humid and relatively warm air masses from the South Pacific Ocean carried by the strong and persistent westerly winds. Systematic glaciological field studies are very scarce on both sides of the AP, among them can be mentioned a mass-balance program performed continuously since summer 1998/99 by the Instituto Antártico Argentino (IAA) on Vega Island, James Ross Archipelago, on the northeastern flank of the AP. Another continuous plurianual glaciological research has been initiated in 2010 jointly by the University of Bonn and the IAA at the Fourcade Glacier on King George Island (KGI) within the framework of the ESF project IMCOAST (FK 03F0617B). Two transects of mass balance stakes were installed from the top of the Warszawa Ice Dome down to the border of the glaciers Fourcade and Polar Club, to serve for calibration and validation of modeling efforts. The stakes were measured at the beginning and end of each summer field campaign in November 2010, February - March 2011, January - March 2012, and especially during the austral winter 2012 up to March 2013 every 10 to 14 days depending on weather conditions. During the austral winter 2013 and until June 2014 the measurements were conducted every 20 to 30 days, weather permitting. Snow density was measured as well in every field trip from June 2012 until June 2104, establishing a rather homogeneous value along the different parts of the glacier. Snow density in late summer, rho_s is usually higher than the one in late winter, rho_w. Seasonal average values were calculated for the area covered by the mass balance stakes, being rho_s= 471 Kg/m**3 and rho_w = 363 Kg/m**3.

(Table 1) Indices of feeding of natural populations of Infusoria in antarctic and subantarctic waters

Ration of mass species of infusoria and their consumption of phytoplankton in the 0-200 m layer of antarctic and subantarctic waters of the Pacific Ocean are evaluated from microscopic study of digestive vacuoles and counts of algae present in them. In antarctic waters tintinnids, which make up 63-75% of total biomass of infusoria, consumed 19-27% of biomass of nannophytoplankton or 0.1-0.3% of biomass of all phytoplankton. In Subantarctic the main infusorial consumers of phytoplankton were large strombidia, which were dominant in infusorial biomass and in their areas of maximum development consumed 14% of biomass of nannophytoplankton, equivalent to about 10% of total biomass of phytoplankton in the 0-200 m layer.

(Table 1) Density values of ODP Leg 126 samples

Sediment dry-bulk density values are essential components of mass accumulation rate calculations. This manuscript presents three equations to calculate dry-bulk density from laboratory measurements of physical properties that have been corrected for the salt content of the pore fluid. In addition, two equations for use with values not corrected for salt content are included. Derivations of the equations from first principles are presented. The second part of the manuscript briefly examines laboratory measurements of the various properties used in the dry-bulk density equations. A discussion of the problems inherent in the density measurements and recommendations are included. This work represents the first comprehensive compilation of equations of dry-bulk density and should prove useful to all scientists who investigate accumulation rates.

Major element concentration and radionuclides of equatorial Pacific deep-sea sediments

The (231Pa/230Th)xs,0 records obtained from two cores from the western (MD97-2138; 1°25'S, 146°24'E, 1900 m) and eastern (ODP Leg 138 Site 849, 0°11.59'N, 110°31.18'W, 3851 m) equatorial Pacific display similar variability over the last 85000 years, i.e. from isotopic stages 1 to 5a, with systematically higher values during the Holocene, isotopic stage 3 and isotopic stage 5a, and lower values, approaching the production rate ratio of the two isotopes (0.093), during the colder periods corresponding to isotopic stages 2 and 4. We have also measured the 230Th-normalized biogenic preserved and terrigenous fluxes, as well as major and trace elements concentrations, in both cores. The (231Pa/230Th)xs,0 results combined with the changes in preserved carbonate and opal fluxes at the eastern site indicate lower productivity in the eastern equatorial Pacific during glacial periods. The (231Pa/230Th)xs,0 variations in the western equatorial Pacific (WEP) also seem to be controlled by productivity (carbonate and/or opal). The generally high (231Pa/230Th)xs,0 ratios (>0.093) of the profile could be due to opal and/or MnO2 in the sinking particles. The profiles of (231Pa/230Th)xs,0 and 230Th-normalized fluxes indicate a decrease in exported carbonate, and possibly opal, during isotopic stages 2 and 4 in MD97-2138. Using 230Th-normalized flux, we also show that sediments from the two cores were strongly affected by sediment redistribution by bottom currents suggesting a control of mass accumulation rates by sediment focusing variability.

Vertical distribution of pelagic polychaetes in Kuril-Kamchatka Trench plankton in August 1966

Vertical distribution patterns of four mass species of pelagic polychaetes (with separate consideration of the adult, juvenile and larval stages) in plankton of the Kuril-Kamchatka region from the surface to depth of 7000 m are analyzed. This material, the author's personal data on the Norwegian and Barents Seas, and literature data on other seas are used to distinguish some general patterns in vertical distribution and reproductive ecology of pelagic polychaetes in the World Ocean as a whole. Mass pelagic polychaetes are also compared to other bathypelagic animals with respect to these ecological features and an estimate is given of their abundance in ocean plankton.

(Table 2) Age interval and accumulation rates of organic and inorganic carbon from ODP Sites 175-1082, 175-1084, 175-1085 and 175-1087

The Ocean Drilling Program Leg 175 recovered a unique series of stratigraphically continuous sedimentary sections along the SW African margin, an area which is presently affected by active coastal upwelling. The accumulation rates of organic and inorganic carbon are a major component of this record. Four Leg 175 sites (1082, 1084, 1085, 1087) are chosen as part of a latitudinal transect from the present northern to southern boundaries of the Benguela Current upwelling system, to decipher the Pliocene-Pleistocene history of biogenic production and its relationship with global and local changes in oceanic circulation and climate. The pattern of CaCO3 and Corg mass accumulation rates (MARs) over 0.25-Myr intervals indicates that the evolution of carbon burial is highly variable between the northern and the southern Benguela regions, as well as between sites that have similar hydrological conditions. This, as well as the presence over most locations of high-amplitude, rapid changes of carbon burial, reflect the partitioning of biogenic production and patterns of sedimentation into local compartments over the Benguela margin. The combined mapping of CaCO3 and Corg MARs at the study locations suggests four distinct evolutionary periods, which are essentially linked with major steps in global climate change: the early Pliocene, the mid-Pliocene warm event, a late Pliocene intensification of northern hemisphere glaciation and the Pleistocene. The early Pliocene spatially heterogeneous patterns of carbon burial are thought to reflect the occurrence of mass-gravitational movements over the Benguela slope which resulted in disruption of the recorded biogenic production. This was followed (3.5-3 Ma) by an episode of peak carbonate accumulation over the whole margin and, subsequently, by the onset of Benguela provincialism into a northern and a southern sedimentary regime near 2 Ma. This mid and late Pliocene evolution is interpreted as a direct response to changes in the ventilation of bottom and intermediate waters, as well as to dynamics of the subtropical gyral circulation and associated wind stress.