Análise da região 5 não traduzida (5 utr) em sequências anotadas como trans-sialidase no genoma de Trypanosoma cruzi

A transsialidase é uma glicoproteína de membrana pertencente a uma família de genes de cópia múltipla, envolvida no processo de invasão celular do Trypanosoma cruzi no hospedeiro vertebrado. Esta dissertação foi concebida com um amplo componente analítico que dependia de dados publicamente disponíveis, ou seja, as sequências oriundas do projeto genoma de T. cruzi e cDNAs de trans-sialidase depositadas no Genbank-dbEST. Este componente analítico necessitou ser complementado e ampliado com a obtenção experimental de novas sequências, a partir da metodologia baseada na transcrição reversa acoplada a PCR. Os fragmentos obtidos de cepas de T. cruzi Dm28c (T. cruzi I), Y (T. cruzi II), CL-Brener (T. cruzi II, cepa híbrida), INPA4167 (zimodema III), 3663 (zimodema III) e Colombiana (zimodema III) foram clonados, sequenciados e analisados composicionalmente. Essas sequências foram editadas e alinhadas usando-se o software CLUSTAL X. Em uma seção específica do Genbank, denominada dbEST, buscamos os cDNAs homólogos a trans-sialidase. Esta busca por similaridade foi realizada individualmente com os números de acesso referentes às seqüências supracitadas contra o dbEST utilizando o BLAST a fim de obtermos informações funcionais e evolutivas. Em seguida, desenvolvemos metodologias experimentais que nos permitiu avaliar segmentos da 5 UTR, tais como os sítios de trans-splicing adicionais ou múltiplos em TS e seus respectivos sinais (região rica em polipirimidina), variação composicional e tamanho da região das sequências entre diferentes linhagens de T. cruzi. O resultado dessa averiguação também nos mostrou a quantidade de cDNAs relacionados com a transsialidase no dbEST bem como a relação desses cDNAs com o mini-exon. As cepas do zimodema III apresentaram tamanho médio dos fragmentos de 312 bases, enquanto T. cruzi I e T. cruzi II apresentaram, respectivamente 209 e 218. Trans splicing adicional ou duplicações gênicas com mutações no sítio primário de trans splicing não parece ser um fenômeno exclusivo de algum grupo populacional, embora seja mais evidente em T. cruzi zimodema III.

Subspecies, morphs and clines in the amphipod Gammarus duebeni from fresh and saline waters

The nature and extent of morphological variation within populations of Gammarus duebeni are examined. The exceptional tolerance of G. duebeni to salinities that encompass three orders of magnitude was known in the 19th Century, and has attracted considerable attention from physiologists and ecologists in the 20th Century, including the likelihood that populations in freshwater are distinct from those living in more saline environments. It is concluded that gradual evolution into discrete and readily distinguished subspecies is currently underway, eventually producing several new species in freshwater and saline habitats.

Strategies for the Stereoselective Synthesis of Carbon Quaternary Centers via Transition Metal-Catalyzed Alkylation of Enolate Compounds

Notwithstanding advances in modern chemical methods, the selective installation of sterically encumbered carbon stereocenters, in particular all-carbon quaternary centers, remains an unsolved problem in organic chemistry. The prevalence of all-carbon quaternary centers in biologically active natural products and pharmaceutical compounds provides a strong impetus to address current limitations in the state of the art of their generation. This thesis presents four related projects, all of which share in the goal of constructing highly-congested carbon centers in a stereoselective manner, and in the use of transition-metal catalyzed alkylation as a means to address that goal.

The first research described is an extension of allylic alkylation methodology previously developed in the Stoltz group to small, strained rings. This research constitutes the first transition metal-catalyzed enantioselective α-alkylation of cyclobutanones. Under Pd-catalysis, this chemistry affords all–carbon α-quaternary cyclobutanones in good to excellent yields and enantioselectivities.

Next is described our development of a (trimethylsilyl)ethyl β-ketoester class of enolate precursors, and their application in palladium–catalyzed asymmetric allylic alkylation to yield a variety of α-quaternary ketones and lactams. Independent coupling partner synthesis engenders enhanced allyl substrate scope relative to allyl β-ketoester substrates; highly functionalized α-quaternary ketones generated by the union of our fluoride-triggered β-ketoesters and sensitive allylic alkylation coupling partners serve to demonstrate the utility of this method for complex fragment coupling.

Lastly, our development of an Ir-catalyzed asymmetric allylic alkylation of cyclic β-ketoesters to afford highly congested, vicinal stereocenters comprised of tertiary and all-carbon quaternary centers with outstanding regio-, diastereo-, and enantiocontrol is detailed. Implementation of a subsequent Pd-catalyzed alkylation affords dialkylated products with pinpoint stereochemical control of both chiral centers. The chemistry is then extended to include acyclic β-ketoesters and similar levels of selective and functional group tolerance are observed. Critical to the successful development of this method was the employment of iridium catalysis in concert with N-aryl-phosphoramidite ligands.

CONTRIBUTION TO THE DEVELOPMENT OF INTELLIGENT CONVERSATIONAL ASSISTANTS IN AUTOMOTIVE ENVIRONMENTS

Esta tesis presenta el diseño y desarrollo del Asistente Conversacional del Automóvil, Voice User Help en inglés, un sistema conversacional basado en el paradigma pregunta-respuesta y diseñado para consultar documentación del vehículo duartne la conducción. Este trabajo recoge investigaciones realizadas en los campos de la documentación técnica, recuperación de información, procesamineto de lenguaje natural, diseñode interfaces de usuario para vehículos, experiencia del usuario y computación afectiva con el fin de crear un asistente adaptativo y dinámico que modifica su comportamiento conversacional dependiendo del estado emocional del usuario.

Crystallization of amorphous Ge2Sb2Te5 films induced by a single femtosecond laser pulse

Crystallization is achieved in amorphous Ge2Sb2Te5 films upon irradiation with a single femtosecond laser pulse. Transmission electron microscopy images evidence the morphology of the crystallized spot which depends on the fluence of the ferntosecond laser pulse. Fine crystalline grains are induced at low fluence, and the coarse crystalline grains are obtained at high fluence. At the damage fluence, ablation of the films occurs. (C) 2004 Elsevier Ltd. All rights reserved.

Photobleaching process of xanthene dyes initiated by N-phenylglycine in the polyvinylalcohol film

The parameters such as quantum yield and molar absorption coefficients of the photoinitiator that are responsible for holographic sensitivity in photopolymer material are investigated with a single beam exposure experiment. The influence of exposure intensity, the concentrations of N-phenylglycine and dye on the photobleaching process of xanthenes dyes are presented. In addition, the effect of diphenyliodonium hexafluorophosphate salt on the quantum yield and molar absorption of xanthene dyes is studied. (c) 2005 Elsevier Ltd. All rights reserved.

Si underlayer induced nano-ablation in AgInSbTe thin films

AgInSbTelSi thin films on glass substrates are prepared by dc magnetron sputtering at room temperature. Using Si underlayer as the thermal diffusion layer, the super-resolution nano-ablation holes with a size of 70nm in the AgInSbTe phase change films are obtained by a far-field focused laser experimental setup, with laser wavelength 405nm and objective-lens numerical aperture 0.90. The nano-ablation formation mechanism is analysed and discussed via the thermal diffusion of sample structures.

准分子激光光束均匀技术

由于放电结构及谐振腔的限制，准分子激光光斑呈现不均的分布。介绍了各种均匀器的工作原理，从衡量光束均匀性的各项指标出发，评述分析了各种均匀方法的优缺点及适用范围。

具有高机械强度的掺Er^3＋：TeO2-Nb2O5玻璃的光谱性质研究

熔制了掺铒碲铌玻璃样品（100-X）TeO2-XNb2O5（X=5，10，15，20mol％），测试了其密度、折射率、转变温度、析晶温度、维氏机械强度、吸收光谱、荧光光谱、荧光寿命等参量。利用Judd-Ofelt和McCumber理论分别计算了铒离子强度参量Ωt（t=2，4，6）和受激发射截面σcmi的大小，研究了掺铒碲铌玻璃样品光谱参量对Nb2O5成分的依赖性，并与典型的碲锌钠玻璃（75TeO2-20ZnO-5Na2O）在热学、机械强度、光谱性质和放大品行四个方面进行了比较．