DNA barcoding identifies a cosmopolitan diet in the ocean sunfish

The ocean sunfish (Mola mola) is the world’s heaviest bony fish reaching a body mass of up to 2.3 tonnes. However, the prey M. mola consumes to fuel this prodigious growth remains poorly known. Sunfish were thought to be obligate gelatinous plankton feeders, but recent studies suggest a more generalist diet. In this study, through molecular barcoding and for the first time, the diet of sunfish in the north-east Atlantic Ocean was characterised. Overall, DNA from the diet content of 57 individuals was successfully amplified, identifying 41 different prey items. Sunfish fed mainly on crustaceans and teleosts, with cnidarians comprising only 16% of the consumed prey. Although no adult fishes were sampled, we found evidence for an ontogenetic shift in the diet, with smaller individuals feeding mainly on small crustaceans and teleost fish, whereas the diet of larger fish included more cnidarian species. Our results confirm that smaller sunfish feed predominantly on benthic and on coastal pelagic species, whereas larger fish depend on pelagic prey. Therefore, sunfish is a generalist predator with a greater diversity of links in coastal food webs than previously realised. Its removal as fisheries’ bycatch may have wider reaching ecological consequences, potentially disrupting coastal trophic interactions.

A metagenomic comparison of endemic viruses from broiler chickens with runting stunting syndrome and from normal birds

Runting-stunting syndrome (RSS) in broiler chickens is an enteric disease that causes significant economic losses to poultry producers worldwide due to elevated feed conversion ratios, decreased body weight during growth, and excessive culling. Of specific interest are the viral agents associated with RSS which have been difficult to fully characterise to date. Past research into the aetiology of RSS has implicated a wide variety of RNA and DNA viruses however, to date, no individual virus has been identified as the main agent of RSS and the current opinion is that it may be caused by a community of viruses, collectively known as the virome. This paper attempts to characterise the viral pathogens associated with 2 – 3 week old RSS-affected and unaffected broiler chickens using next-generation sequencing and comparative metagenomics. Analysis of the viromes identified a total of 20 DNA & RNA viral families, along with 2 unidentified categories, comprised of 31 distinct viral genera and 7 unclassified genera. The most abundant viral families identified in this study were the Astroviridae, Caliciviridae, Picornaviridae, Parvoviridae, Coronaviridae, Siphoviridae, and Myoviridae. This study has identified historically significant viruses associated with the disease such as chicken astrovirus, avian nephritis virus, chicken parvovirus, and chicken calicivirus along with relatively novel viruses such as chicken megrivirus and sicinivirus 1 and will help expand the knowledge related to enteric disease in broiler chickens, provide insights into the viral constituents of a healthy avian gut, and identify a variety of enteric viruses and viral communities appropriate for further study.

Articulação terriotiral e sustentabilidade: estudo sobre o gerenciamento de resíduos de serviços de saúde no ABC Paulista

Tese apresentada ao Programa de Pós-Graduação em Administração da Universidade Municipal de São Caetano do Sul para a obtenção do título de Doutor em Administração

Modelling interacting phenomena during the solidification of metals in the casting process

A variety of interacting complex phenomena takes place during the casting of metallic components. Here molten metal is poured into a mould cavity where it flows, cools, solidifies and then deforms in its solid state. As the metal cools, thermal gradients will promote thermal convection which will redistribute the heat around the component (usually from feeders or risers) towards the solidification front and mushy zone. Also, as the evolving solid regions of the cast component deform they will form gap at the cast-mould interface. This gap may change the rate of solidification in certain parts the casting, hence affecting the manner in which the cast component solidifies. Interaction between a cast component and its surrounding mould will also govern stress magnitudes in both the cast and mould -these may lead to defects such as cracks. This paper presents a multiphysics modelling approach to this complex process. Emphasis will be placed on the interacting phenomena taking place during the process and the modelling strategy used. Comparisons with plant data are also be given.

Typologie biosédimentaire de la baie de Saint-Brieuc (Manche ouest), et estimation de la biomasse des catégories trophiques macrozoobenthiques.

The aim of this report is to provide biomass estimates (AFDW, g.m-2 ) of the four main components of the benthic food web in the southern part of the Bay of St-Brieuc: suspension-feeders, deposit-feeders, herbivores and carnivores. Patterns in the environmental data (i.e., sedimentary characters) are first analysed, and then related to the spatial distribution of communities ; both approaches use classical ordination techniques (PCA, correspondence analysis). A second typology, based on a review of published litterature concerning coastal macrozoobenthos feeding, ascribes each taxonomic unit to a trophic group. Finally, quantitative results are thus given per biota ; suspension-feeders appear to dominate (in terms of biomass) most of fine-sand habitats of the studied area.

Trophic niche overlap of sprat and commercial small pelagic teleosts in the Gulf of Lions (NW Mediterranean Sea)

Increasing abundance of non-commercial sprats and decreasing biomass and landings of commercial anchovies and sardines justify the need to study the feeding ecology and trophic niche overlap of these planktivorous species in the Gulf of Lions. Their diet has been investigated on the basis of stomach content and stable isotope analyses in 2011 and 2012 according to different depths and regions in the study area. The main prey were Corycaeidae copepods, Clauso/Paracalanus, Euterpina acutifrons and Microsetella, for sprats and small copepods, such as Microsetella, Oncaea and Corycaeidae, for anchovies and sardines. This is the first time that the diet of sprats is described in the Gulf of Lions. Sprats fed on a larger size spectrum of prey and seem to be more generalist feeders compared to anchovies and sardines. Ontogenetic changes as well as spatial and temporal variations of the diet occurred in the three species. Stable isotope analysis revealed mobility of sardines and sprats among feeding areas while anchovies exhibited preferred feeding areas. Sprats showed a higher relative condition assessed by C/N ratios than sardines and anchovies. Our results showed an overlap of the trophic niches for the three species, indicating a potential trophic competition in the Gulf of Lions.

Exposure to toxic Alexandrium minutum activates the detoxifying and antioxidant systems in gills of the oyster Crassostrea gigas

Harmful algal blooms of Alexandrium spp. dinoflagellates regularly occur in French coastal waters contaminating shellfish. Studies have demonstrated that toxic Alexandrium spp. disrupt behavioural and physiological processes in marine filter-feeders, but molecular modifications triggered by phycotoxins are less well understood. This study analyzed the mRNA levels of 7 genes encoding antioxidant/detoxifying enzymes in gills of Pacific oysters (Crassostrea gigas) exposed to a cultured, toxic strain of A. minutum, a producer of paralytic shellfish toxins (PST) or fed Tisochrysis lutea (T. lutea, formerly Isochrysis sp., clone Tahitian (T. iso)), a non-toxic control diet, in four repeated experiments. Transcript levels of sigma-class glutathione S-transferase (GST), glutathione reductase (GR) and ferritin (Fer) were significantly higher in oysters exposed to A. minutum compared to oysters fed T. lutea. The detoxification pathway based upon glutathione (GSH)-conjugation of toxic compounds (phase II) is likely activated, and catalyzed by GST. This system appeared to be activated in gills probably for the detoxification of PST and/or extra-cellular compounds, produced by A. minutum. GST, GR and Fer can also contribute to antioxidant functions to prevent cellular damage from increased reactive oxygen species (ROS) originating either from A. minutum cells directly, from oyster hemocytes during immune response, or from other gill cells as by-products of detoxification.

Múltiplas antenas como alternativa para aumentar a taxa de extração de chaves secretas em redes veiculares com desvanecimento lento

The communication in vehicular ad hoc networks (VANETs) is commonly divided in two scenarios, namely vehicle-to-vehicle (V2V) and vehicle-to-infrastructure (V2I). Aiming at establishing secure communication against eavesdroppers, recent works have proposed the exchange of secret keys based on the variation in received signal strength (RSS). However, the performance of such scheme depends on the channel variation rate, being more appropriate for scenarios where the channel varies rapidly, as is usually the case with V2V communication. In the communication V2I, the channel commonly undergoes slow fading. In this work we propose the use of multiple antennas in order to artificially generate a fast fading channel so that the extraction of secret keys out of the RSS becomes feasible in a V2I scenario. Numerical analysis shows that the proposed model can outperform, in terms of secret bit extraction rate, a frequency hopping-based method proposed in the literature.

Sedimenttexturen der Sohlbankfläche im Naturdenkmal "Saurierfährten Münchehagen" (Berrias), Rehburger Berge : Rippelmarken und Ichnofossilien als Grundlage einer Deutung des Ablagerungsraumes

Die Gesteine des bearbeiteten Aufschlusses, dem Naturdenkmal "Saurierfährten Münchehagen" bei Münchehagen (Rehburger Berge), liegen stratigraphisch in der Bückeberg-Formation des Berrias (Wealden). Aufgeschlossen ist der Hauptsandstein (Wealden 3) . Es werden die Sedimenttexturen der Sohlbankfläche des ehemaligen Steinbruchs analysiert und interpretiert. Vorherrschende Schichtungstypen sind Wellenrippelschichtung und Flaserschichtung. Die Sedimente sind stark bioturbat. Auf mehreren freiliegenden Flächenniveaus der Sohlbank sind Rip- pelmarken zu beobachten, die systematisch vermessen wurden. Danach handelt es sich uro Wellenrippeln und untergeordnet um strömungsüberformte Wellenrippeln durch ablaufendes Wasser. Zahlreiche Merkmale zeigen wiederholtes Auftauchen und Trok- kenfallen an. Tonlagen kennzeichnen zeitweilige Stillwasserbedingungen. Ein ehemals verzweigtes Rinnensystem ist in Relikten erhalten und beweist ebenfalls einen wechselnden Wasserstand (ablaufendes Wasser). Sporadisch kam es im Zuge hochenergetischer Ereignisse zu einem schichtflutartigen Abfließen des Wassers. Eine reiche Ichnofauna ist zu beobachten. Wenige Spurentypen sind vorhanden, die Spurendichte ist jedoch sehr hoch. Es dominieren horizontale oder wenig geneigte Gestaltungswühlgefüge, vertikale Bauten kommen nur untergeordnet vor. Als häufigste Spurentypen treten Thalassinoides, Muensteria, Plano- lites und Pelecypodichnus auf. Die Größe der Ichnofossilien ist meist gering. Die Spuren bilden eine Ichnocoenose aus Ichnofossilien der Cruziana- und untergeordnet der Skolithos- Fazies. Bivalven belegen Brackwasser-Verhältnisse. Dies alles sind Merkmale eines lagunären Ablagerungsraumes, gelegen am Rand eines gezeitenarmen bzw. -losen Nebenmeeres (Niedersächsisches Becken) im Übergang von der fluviatilen in die litorale Fazies im rückwärtigen Bereich eines Barrierensystems. Wahrscheinlich spielte Wind eine entscheidende Rolle als Ursache für Wasserspiegelschwankungen. Die maximale Wassertiefe bei auflandigem Sturm hat vermutlich nicht mehr als 3 - 4 m betragen. Sonst war sie wahrscheinlich deutlich geringer und ermöglichte Dinosauriern ein Durchwaten des Gewässers, wie Fährten auf der Sohlfläche beweisen.

Diurnal temporal patterns of the diversity and the abundance of reef fishes in a branching coral patch in New Caledonia

Small-scale spatial and temporal variability in animal abundance is an intrinsic characteristic of marine ecosystems but remains largely unknown for most animals, including coral reef fishes. In this study, we used a remote autonomous unbaited video system and recorded reef fish assemblages during daylight hours, 10 times a day for 34 consecutive days in a branching coral patch of the lagoon of New Caledonia. In total, 50 031 fish observations belonging to 114 taxa, 66 genera and 31 families were recorded in 256 recorded videos. Carnivores and herbivore-detritus feeders dominated the trophic structure. We found significant variations in the composition of fish assemblages between times of day. Taxa richness and fish abundance were greater in the early morning and in the late afternoon than during the day. Fourteen taxa displayed well-defined temporal patterns in abundance with one taxon influenced by time of day, six influenced by tidal state and seven influenced by both time of day and tidal state. None of these 14 taxa were piscivores, 10 were herbivore-detritus feeders, three were carnivores and one was plankton feeder. Our results suggest a diel migration from feeding grounds to shelter areas and highlight the importance of taking into account small-scale temporal variability in animal diversity and abundance when studying connectivity between habitats and monitoring communities.

Microlepidoptera of Illinois hill prairies

Among insects, which are the most diverse eukaryotic group on earth, Lepidoptera is one of four enormously diverse orders, with approximately 10,000 described species in North America. Within the order, Nearctic “microlepidoptera,” which represent an overwhelmingly large percentage of diversity within the order, remain poorly known despite their ecological importance in many plant communities. In this thesis, I undertook several studies of microlepidoptera diversity in a natural community type (hill prairie) and a managed community type (biofuel feedstock). In two Illinois hill prairies differing in size, latitude, and plant composition, alpha diversity of Pyraloidea and Tortricidae was similar, but the prairies were found to support different sets of species of these moth groups. It is concluded that the similarity in alpha diversity occurs because the larger prairie supports primarily a complement of moth species that feed as larvae on prairie plants (especially species of Asteraceae and Fabaceae), whereas the moths collected in the small prairie represent relatively few prairie-associated species, plus a large component of species that feed as larvae on deciduous trees that surround the prairie. This agrees with the finding of high beta diversity of moths between the sites, which reflects a high level of larval hostplant specificity in most species of Pyraloidea and Tortricidae. Based on published information plus observations made on microlepidoptera collected during the course of this study, 31 families of basal microlepidoptera were reviewed with an aim toward evaluating the likelihood of their including species that are dependent on tallgrass prairie. Of these families, 12 were evaluated as possible, and two as likely or certain, to include prairie-dependent species. In a comparison of moth diversity in light-trap samples from corn, miscanthus, switchgrass, and native prairie, alpha diversity was highest in prairie and was higher in switchgrass than in the other two biofuel crops. Moth species complements generally were similar among the biofuel crops, and prairie shared higher species complementarity with switchgrass than with corn or miscanthus. These findings suggest that large-scale conversion of land to biofuel crops may, to a substantial degree, detrimentally affect arthropod biodiversity, with a resulting loss of valuable arthropod-derived ecosystem services both within the cropping systems and in the surrounding landscape. During the course of this study, rearing efforts yielded two species of moths of the family Gelechiidae, both of which are monophagous leaf feeders on leadplant, Amorpha canescens (Fabaceae). Because these moths are restricted to tallgrass prairie, they are likely to be of interest to conservation biologists. In the interest of naming the moths to facilitate communication regarding them, and to augment our taxonomic knowledge of their respective genera, the moths are described, and diagnoses are provided to differentiate them from similar, related species.

Analyzing downloaded data from road side units

En el contexto de las redes vehiculares, analizamos una aplicación de descarga de mapas, donde cada vehículo descarga datos de mapas relevantes según su posición. Entre las estrategias propuestas está la de utilizar las redes con infraestructura (I2V) además de las redes vehículo a vehículo (V2V). En este trabajo comparamos dos métodos de fragmentación de archivos, para el segmento I2V; los métodos son Random Sort Strategy (RSS) y Network Coding (NC). Encontramos que: cuando se utiliza NC la distribución de los diferentes fragmentos recibidos es independiente del tamaño del archivo. Cuando se utiliza RSS, la media y la desviación estándar dependen del tamaño del archivo. Estos resultados serán utilizados para el análisis del segmento V2V de la red.

Towards the systematic simplification of mechanistic models

Mechanistic models used for prediction should be parsimonious, as models which are over-parameterised may have poor predictive performance. Determining whether a model is parsimonious requires comparisons with alternative model formulations with differing levels of complexity. However, creating alternative formulations for large mechanistic models is often problematic, and usually time-consuming. Consequently, few are ever investigated. In this paper, we present an approach which rapidly generates reduced model formulations by replacing a model’s variables with constants. These reduced alternatives can be compared to the original model, using data based model selection criteria, to assist in the identification of potentially unnecessary model complexity, and thereby inform reformulation of the model. To illustrate the approach, we present its application to a published radiocaesium plant-uptake model, which predicts uptake on the basis of soil characteristics (e.g. pH, organic matter content, clay content). A total of 1024 reduced model formulations were generated, and ranked according to five model selection criteria: Residual Sum of Squares (RSS), AICc, BIC, MDL and ICOMP. The lowest scores for RSS and AICc occurred for the same reduced model in which pH dependent model components were replaced. The lowest scores for BIC, MDL and ICOMP occurred for a further reduced model in which model components related to the distinction between adsorption on clay and organic surfaces were replaced. Both these reduced models had a lower RSS for the parameterisation dataset than the original model. As a test of their predictive performance, the original model and the two reduced models outlined above were used to predict an independent dataset. The reduced models have lower prediction sums of squares than the original model, suggesting that the latter may be overfitted. The approach presented has the potential to inform model development by rapidly creating a class of alternative model formulations, which can be compared.

Bivalves marinhos do miocénio superior (Tortoniano superior) de Cacela (Algarve, Portugal)

Dissertação de mestrado em Estudos Marinhos e Costeiros, Unidade de Ciências e Tecnologias dos Recursos Aquáticos, Univ. do Algarve, 2000

Térmitas como bioindicadores de qualidade de habitat na caatinga, Brasil: há uma sintonia entre as variáveis estruturais dos habitats e as taxocenoses amostradas?

The composition of termite assemblages was analyzed at three Caatinga sites of the Seridó Ecological Station, located in the municipality of Serra Negra do Norte, in the state of Rio Grande do Norte, Brazil. These sites have been subjected to selective logging, and cleared for pasture and farming. A standardized sampling protocol for termite assemblages (30h/person/site) was conducted between September 2007 and February 2009. At each site we measured environmental variables, such as soil granulometry, pH and organic matter, necromass stock, vegetation height, tree density, stem diameter at ankle height (DAH) and the largest and the smallest crown width. Ten species of termites, belonging to eight genera and three families, were found at the three experimental sites. Four feeding-groups were sampled: wood-feeders, soil-feeders, wood-soil interface feeders and leaf-feeders. The wood-feeders were dominant in number of species and number of encounters at all sites. In general, the sites were not significantly different in relation to the environmental variables measured. The same pattern was observed for termite assemblages, where no significant differences in species richness, relative abundance and taxonomic and functional composition were observed between the three sites. The agreement between the composition of assemblages and environmental variables reinforces the potential of termites as biological indicators of habitat quality