Positron emission tomography (PET) tumor segmentation and quantification: Development of new algorithms

Tumor functional volume (FV) and its mean activity concentration (mAC) are the quantities derived from positron emission tomography (PET). These quantities are used for estimating radiation dose for a therapy, evaluating the progression of a disease and also use it as a prognostic indicator for predicting outcome. PET images have low resolution, high noise and affected by partial volume effect (PVE). Manually segmenting each tumor is very cumbersome and very hard to reproduce. To solve the above problem I developed an algorithm, called iterative deconvolution thresholding segmentation (IDTS) algorithm; the algorithm segment the tumor, measures the FV, correct for the PVE and calculates mAC. The algorithm corrects for the PVE without the need to estimate camera's point spread function (PSF); also does not require optimizing for a specific camera. My algorithm was tested in physical phantom studies, where hollow spheres (0.5-16 ml) were used to represent tumors with a homogeneous activity distribution. It was also tested on irregular shaped tumors with a heterogeneous activity profile which were acquired using physical and simulated phantom. The physical phantom studies were performed with different signal to background ratios (SBR) and with different acquisition times (1-5 min). The algorithm was applied on ten clinical data where the results were compared with manual segmentation and fixed percentage thresholding method called T50 and T60 in which 50% and 60% of the maximum intensity respectively is used as threshold. The average error in FV and mAC calculation was 30% and -35% for 0.5 ml tumor. The average error FV and mAC calculation were ~5% for 16 ml tumor. The overall FV error was ∼10% for heterogeneous tumors in physical and simulated phantom data. The FV and mAC error for clinical image compared to manual segmentation was around -17% and 15% respectively. In summary my algorithm has potential to be applied on data acquired from different cameras as its not dependent on knowing the camera's PSF. The algorithm can also improve dose estimation and treatment planning.^

Sistemas de cálculo, análise e operação virtual: interferências de campos elétricos e magnéticos produzidas por estações radio base de acesso múltiplo por divisão de código em banda larga - WCDMA

In this work it was developed mathematical resolutions taking as parameter maximum intensity values for the interference analysis of electric and magnetic fields and was given two virtual computer system that supports families of CDMA and WCDMA technologies. The first family were developed computational resources to solve electric and magnetic field calculations and power densities in Radio Base stations , with the use of CDMA technology in the 800 MHz band , taking into account the permissible values referenced by the Commission International Protection on non-Ionizing Radiation . The first family is divided into two segments of calculation carried out in virtual operation. In the first segment to compute the interference field radiated by the base station with input information such as radio channel power; Gain antenna; Radio channel number; Operating frequency; Losses in the cable; Attenuation of direction; Minimum Distance; Reflections. Said computing system allows to quickly and without the need of implementing instruments for measurements, meet the following calculated values: Effective Radiated Power; Sector Power Density; Electric field in the sector; Magnetic field in the sector; Magnetic flux density; point of maximum permissible exposure of electric field and power density. The results are shown in charts for clarity of view of power density in the industry, as well as the coverage area definition. The computer module also includes folders specifications antennas, cables and towers used in cellular telephony, the following manufacturers: RFS World, Andrew, Karthein and BRASILSAT. Many are presented "links" network access "Internet" to supplement the cable specifications, antennas, etc. . In the second segment of the first family work with more variables , seeking to perform calculations quickly and safely assisting in obtaining results of radio signal loss produced by ERB . This module displays screens representing propagation systems denominated "A" and "B". By propagating "A" are obtained radio signal attenuation calculations in areas of urban models , dense urban , suburban , and rural open . In reflection calculations are present the reflection coefficients , the standing wave ratio , return loss , the reflected power ratio , as well as the loss of the signal by mismatch impedance. With the spread " B" seek radio signal losses in the survey line and not targeted , the effective area , the power density , the received power , the coverage radius , the conversion levels and the gain conversion systems radiant . The second family of virtual computing system consists of 7 modules of which 5 are geared towards the design of WCDMA and 2 technology for calculation of telephone traffic serving CDMA and WCDMA . It includes a portfolio of radiant systems used on the site. In the virtual operation of the module 1 is compute-: distance frequency reuse, channel capacity with noise and without noise, Doppler frequency, modulation rate and channel efficiency; Module 2 includes computes the cell area, thermal noise, noise power (dB), noise figure, signal to noise ratio, bit of power (dBm); with the module 3 reaches the calculation: breakpoint, processing gain (dB) loss in the space of BTS, noise power (w), chip period and frequency reuse factor. Module 4 scales effective radiated power, sectorization gain, voice activity and load effect. The module 5 performs the calculation processing gain (Hz / bps) bit time, bit energy (Ws). Module 6 deals with the telephone traffic and scales 1: traffic volume, occupancy intensity, average time of occupancy, traffic intensity, calls completed, congestion. Module 7 deals with two telephone traffic and allows calculating call completion and not completed in HMM. Tests were performed on the mobile network performance field for the calculation of data relating to: CINP , CPI , RSRP , RSRQ , EARFCN , Drop Call , Block Call , Pilot , Data Bler , RSCP , Short Call, Long Call and Data Call ; ECIO - Short Call and Long Call , Data Call Troughput . As survey were conducted surveys of electric and magnetic field in an ERB , trying to observe the degree of exposure to non-ionizing radiation they are exposed to the general public and occupational element. The results were compared to permissible values for health endorsed by the ICNIRP and the CENELEC .

Histoire évolutive de la galaxie spirale NGC 5430

La galaxie spirale barrée NGC 5430 est particulière en ce sens qu’elle présente un noeud Wolf-Rayet très lumineux et des bras asymétriques. Des spectres longue-fente le long de la barre et dans le bras déformé ainsi que des données SpIOMM couvrant l’ensemble de la galaxie ont été analysées. L’absorption stellaire sous-jacente a été soustraite des spectres longue-fente à l’aide d’un ajustement de modèles théoriques de populations stellaires fait avec le programme GANDALF. L’absorption a un impact très important sur le calcul de l’extinction ainsi que sur les différents diagnostics propres aux régions HII et aux populations stellaires jeunes. Enfin, cette étude montre que NGC 5430 comporte une composante gazeuse ionisée diffuse sur toute son étendue et qu’il est important d’en tenir compte afin d’appliquer correctement les diagnostics. Un des scénarios évolutifs proposés au terme de cette étude est que le noeud Wolf-Rayet constitue le restant d’une petite galaxie ou d’un nuage intergalactique qui serait entré en collision avec NGC 5430. Une structure englobant le noeud Wolf-Rayet se déplace à une vitesse considérablement inférieure (50 - 70 km s-1) à celle attendue à une telle distance du centre de la galaxie (200 - 220 km s-1). De plus, le noeud Wolf-Rayet semble très massif puisque l’intensité maximale du continu stellaire de cette région est semblable à celle du noyau et est de loin supérieure à celle de l’autre côté de la barre. Le nombre d’étoiles Wolf-Rayet (2150) est aussi considérable. Il n’est toutefois pas exclu que la différence de vitesses observée témoigne d’un écoulement de gaz le long de la barre, qui alimenterait la formation stellaire du noeud Wolf-Rayet ou du noyau.

Circulações locais no Rio Grande do Sul: brisas marítima/terrestre e sua interação com as brisas lacustres/terrestres

A região sul do Rio Grande do Sul está em localização favorável à formação de tipos de brisa bem caracterizados devido a sua proximidade com os sistemas lacustres e também o Oceano Atlântico. A diferença de vegetação e as temperaturas da superfície do mar, da laguna e do solo, são os principais impulsionadores das circulações locais. Uma das formas de analisar estas circulações locais é através de modelos que simulam a formação da brisa. Desta forma utilizou-se o modelo de mesoescala Weather Research and Forecasting para caracterizar as circulações locais na região sul do Brasil devido às influências do Oceano Atlântico e das lagoas presentes na região: Lagoa dos Patos, Lagoa Mangueira e Lagoa Mirim. Ao todo foram realizadas três simulações: uma para a validação do modelo e duas para simulação das brisas. O modelo apresentou correlações entre 0,7 e 0,9 para a temperatura do ar a dois metros e para a pressão atmosférica. As correlações para a umidade específica e para o vento a dez metros ficaram entre 0,3 e 0,8. Na simulação básica, a brisa lacustre apresentou intensidade máxima às 15 UTC (12 HL) sobre a Lagoa dos Patos e Mangueira e às 18 UTC (15 HL) sobre a Lagoa Mirim. Nos horários entre 0 UTC (21HL) e 9 UTC (6 HL), período em que a brisa terrestre está atuante, observou-se a rotação do vento no sentido anti-horário e também diminuição de intensidade. Para a simulação idealizada onde foi suprimido o efeito sinótico, a brisa marítima no início de sua formação sofreu um bloqueio pela brisa lacustre no horário das 15 UTC (12 HL). Esta oclusão permanece até às 18 UTC (15 HL). Após este período a brisa lacustre diminui a intensidade e dá lugar a brisa marítima que possui direção leste com intensidade menor do que a que foi observada na simulação básica. A brisa terrestre teve início às 0 UTC (21 HL) e seu valor máximo foi de 4 m/s as 9 UTC (6 HL). Para a validação do modelo concluiu-se que o mesmo é adequado para a avaliação das circulações locais. A brisa terrestre caracterizou-se melhor sem a presença do vento sinótico. As brisas Lacustres das Lagoas Mirins e dos Patos possuem influência maior do que a brisa gerada pela Lagoa Mangueira e em determinados períodos opõem-se ao avanço da brisa marítima. A associação do vento sinótico a brisa marítima intensifica a velocidade dos ventos, que por sua vez sobrepõem-se a brisa lacustre no final da tarde. A brisa terrestre formada durante a noite não é forte o suficiente para sobrepor o vento sinótico, mas reduz sua intensidade e altera sua direção.

Positron Emission Tomography (PET) Tumor Segmentation and Quantification: Development of New Algorithms

Tumor functional volume (FV) and its mean activity concentration (mAC) are the quantities derived from positron emission tomography (PET). These quantities are used for estimating radiation dose for a therapy, evaluating the progression of a disease and also use it as a prognostic indicator for predicting outcome. PET images have low resolution, high noise and affected by partial volume effect (PVE). Manually segmenting each tumor is very cumbersome and very hard to reproduce. To solve the above problem I developed an algorithm, called iterative deconvolution thresholding segmentation (IDTS) algorithm; the algorithm segment the tumor, measures the FV, correct for the PVE and calculates mAC. The algorithm corrects for the PVE without the need to estimate camera’s point spread function (PSF); also does not require optimizing for a specific camera. My algorithm was tested in physical phantom studies, where hollow spheres (0.5-16 ml) were used to represent tumors with a homogeneous activity distribution. It was also tested on irregular shaped tumors with a heterogeneous activity profile which were acquired using physical and simulated phantom. The physical phantom studies were performed with different signal to background ratios (SBR) and with different acquisition times (1-5 min). The algorithm was applied on ten clinical data where the results were compared with manual segmentation and fixed percentage thresholding method called T50 and T60 in which 50% and 60% of the maximum intensity respectively is used as threshold. The average error in FV and mAC calculation was 30% and -35% for 0.5 ml tumor. The average error FV and mAC calculation were ~5% for 16 ml tumor. The overall FV error was ~10% for heterogeneous tumors in physical and simulated phantom data. The FV and mAC error for clinical image compared to manual segmentation was around -17% and 15% respectively. In summary my algorithm has potential to be applied on data acquired from different cameras as its not dependent on knowing the camera’s PSF. The algorithm can also improve dose estimation and treatment planning.

Os efeitos imediatos da aplicação de Kinesiotape no complexo articular do ombro no desempenho do nadador de competição

Projeto de Graduação apresentado à Universidade Fernando Pessoa como parte dos requisitos para obtenção do grau de Licenciada em Fisioterapia

Effects of prolonged running performed at the intensity corresponding to the onset of blood lactate accumulation, on maximum isokinetic strength in active non-athletic individuals

OBJETIVO: O objetivo deste estudo foi analisar os efeitos da corrida contínua prolongada realizada na intensidade correspondente ao início do acúmulo do lactato no sangue (OBLA) sobre o torque máximo dos extensores do joelho analisado em diferentes tipos de contração e velocidade de movimento em indivíduos ativos. MÉTODO: Oito indivíduos do gênero masculino (23,4 ± 2,1 anos; 75,8 ± 8,7 kg; 171,1 ± 4,5 cm) participaram deste estudo. Primeiramente, os sujeitos realizaram um teste incremental até a exaustão voluntária para determinar a velocidade correspondente ao OBLA. Posteriormente, os sujeitos retornaram ao laboratório em duas ocasiões, separadas por pelo menos sete dias, para realizar 5 contrações isocinéticas máximas para os extensores do joelho em duas velocidades angulares (60 e 180º.s-1) sob as condições excêntrica (PTE) e concêntrica (PTC). Uma sessão foi realizada após um período de aquecimento padronizado (5 min a 50%VO2max). A outra sessão foi realizada após uma corrida contínua no OBLA até a exaustão voluntária. Essas sessões foram executadas em ordem randômica. RESULTADOS: Houve redução significante do PTC somente a 60º.s-1 (259,0 ± 46,4 e 244,0 ± 41,4 N.m). Entretanto, a redução do PTE foi significante a 60º.s-1 (337,3 ± 43,2 e 321,7 ± 60,0 N.m) e 180º.s-1 (346,1 ± 38,0 e 319,7 ± 43,6 N.m). As reduções relativas da força após o exercício de corrida foram significantemente diferentes entre os tipos de contração somente a 180º.s-1. CONCLUSÃO: Podemos concluir que, em indivíduos ativos, a redução no torque máximo após uma corrida contínua prolongada no OBLA pode ser dependente do tipo de contração e da velocidade angular.

The seismicity of Portugal and its adjacent Atlantic region from 1300 to 2014: Maximum Observed Intensity map (MOI)

In this study, we considered earthquakes with a maximum observed intensity (MOI) Io≥V that occurred throughout the Portuguese mainland and its adjacent Atlantic region to produce the map of maximum intensities of Portugal. This map is based on a wide variety of historical and recent sources, including 175 earthquakes, over the period of 1300–2014. This MOI map allows the regions of high, medium, and low levels of seismic hazard to be highlighted. The entirety of Portugal has been affected by major seismic events, some of which have caused serious damage. In addition, offshore earthquakes have had significant impacts on the coastal cities located in the central and southern regions of the country. Because the southern region of mainland Portugal is more active than the northern region, the largest concentrations of events with Io≥VI are in the southern region, especially on the mainland near the city of Évora, in the Lisbon region, in the Lower Tagus Valley region, and along the Algarve coast, especially in the southwest region in Cape of São Vicente and the Gorringe Bank.

Maximum recovery after knee replacement - the MARKER study rationale and protocol

Background There is little scientific evidence to support the usual practice of providing outpatient rehabilitation to patients undergoing total knee replacement surgery (TKR) immediately after discharge from the orthopaedic ward. It is hypothesised that the lack of clinical benefit is due to the low exercise intensity tolerated at this time, with patients still recovering from the effects of major orthopaedic surgery. The aim of the proposed clinical trial is to investigate the clinical and cost effectiveness of a novel rehabilitation strategy, consisting of an initial home exercise programme followed, approximately six weeks later, by higher intensity outpatient exercise classes. Methods/Design In this multicentre randomised controlled trial, 600 patients undergoing primary TKR will be recruited at the orthopaedic pre-admission clinic of 10 large public and private hospitals in Australia. There will be no change to the medical or rehabilitative care usually provided while the participant is admitted to the orthopaedic ward. After TKR, but prior to discharge from the orthopaedic ward, participants will be randomised to either the novel rehabilitation strategy or usual rehabilitative care as provided by the hospital or recommended by the orthopaedic surgeon. Outcomes assessments will be conducted at baseline (pre-admission clinic) and at 6 weeks, 6 months and 12 months following randomisation. The primary outcomes will be self-reported knee pain and physical function. Secondary outcomes include quality of life and objective measures of physical performance. Health economic data (health sector and community service utilisation, loss of productivity) will be recorded prospectively by participants in a patient diary. This patient cohort will also be followed-up annually for five years for knee pain, physical function and the need or actual incidence of further joint replacement surgery. Discussion The results of this pragmatic clinical trial can be directly implemented into clinical practice. If beneficial, the novel rehabilitation strategy of utilising outpatient exercise classes during a later rehabilitation phase would provide a feasible and potentially cost-effective intervention to optimise the physical well-being of the large number of people undergoing TKR.