Defining habitat characteristics influencing the distribution, density and growth of Plaice (Pleuronectes Platessa) and Dab (Limanda Limanda) on west of Ireland nursery grounds

Plaice (Pleuronectes platessa, L.) and dab (Limanda limanda, L.) are among the most abundant flatfishes in the north-eastern Atlantic region and the dominant species in shallow coastal nursery grounds. With increasing pressures on commercial flatfish stocks in combination with changing coastal environments, better knowledge of population dynamics during all life stages is needed to evaluate variability in year-class strength and recruitment to the fishery. The aim of this research was to investigate the complex interplay of biotic and abiotic habitat components influencing the distribution, density and growth of plaice and dab during the vulnerable juvenile life stage and to gain insight in spatial and temporal differences in nursery habitat quality along the west coast of Ireland. Intraspecific variability in plaice diet was observed at different spatial scales and showed a link with condition, recent growth and morphology. This highlights the effect of food availability on habitat quality and the need to consider small scale variation when attempting to link habitat quality to feeding, growth and condition of juvenile flatfish. There was evidence of trophic, spatial and temporal resource partitioning between juvenile plaice and dab allowing the co-existence of morphologically similar species in nursery grounds. In the limited survey years there was no evidence that the carrying capacity of the studied nursery grounds was reached but spatial and interannual variations in fish growth indicated fluctuating environments in terms of food availability, predator densities, sediment features and physico-chemical conditions. Predation was the most important factor affecting habitat quality for juvenile plaice and dab with crab densities negatively correlated to fish condition whereas shrimp densities were negatively associated with densities of small-sized juveniles in spring. A comparison of proxies for fish growth showed the advantage of Fulton’s K for routine use whereas RNA:DNA ratios proved less powerful when short-term environmental fluctuations are lacking. This study illustrated how distinct sets of habitat features can drive spatial variation in density and condition of juvenile flatfish highlighting the value of studying both variables when modeling habitat requirements. The habitat models generated in this study also provide a powerful tool to predict potential climate and anthropogenic impacts on the distribution and condition of juveniles in flatfish nurseries. The need for effective coastal zone management was emphasized to ensure a sustainable use of coastal resources and successful flatfish recruitment to the fishery.

Response of the Pacific oyster Crassostrea gigas, Thunberg 1793, to pesticide exposure under experimental conditions.

Pesticide run-off into the ocean represents a potential threat to marine organisms, especially bivalves living in coastal environments. However, little is known about the effects of environmentally relevant concentrations of pesticides at the individual level. In this study, the suppression subtractive hybridisation technique was used to discover the main physiological function affected by a cocktail of three pesticides (lindane, metolachlor and carbofuran) in the Pacific oyster Crassostrea gigas. Two oyster populations exposed to different pollution levels in the wild were investigated. The pesticide concentrations used to induce stress were close to those found in the wild. In a time course experiment, the expression of three genes implicated in iron metabolism and oxidative stress as well as that of two ubiquitous stress proteins was examined. No clear regulation of gene or protein expression was found, potentially due to a low-dose effect. However, we detected a strong site- and organ-specific response to the pesticides. This study thus (1) provides insight into bivalve responses to pesticide pollution at the level of the transcriptome, which is the first level of response for organisms facing pollution, and (2) raises interesting questions concerning the importance of the sites and organs studied in the toxicogenomic field.

Stratigraphy of the Cenomanian-Turonian Oceanic Anoxic Event OAE2 in shallow shelf sequences of NE Egypt

Two shallow water late Cenomanian to early Turonian sequences of NE Egypt have been investigated to evaluate the response to OAE2. Age control based on calcareous nannoplankton, planktic foraminifera and ammonite biostratigraphies integrated with delta(13)C stratigraphy is relatively good despite low diversity and sporadic occurrences. Planktic and benthic foraminiferal faunas are characterized by dysoxic, brackish and mesotrophic conditions, as indicated by low species diversity, low oxygen and low salinity tolerant planktic and benthic species, along with oyster-rich limestone layers. In these subtidal to inner neritic environments the OAE2 delta(13)C excursion appears comparable and coeval to that of open marine environments. However, in contrast to open marine environments where anoxic conditions begin after the first delta(13)C peak and end at or near the Cenomanian-Turonian boundary, in shallow coastal environments anoxic conditions do not appear until the early Turonian. This delay in anoxia appears to be related to the sea-level transgression that reached its maximum in the early Turonian, as observed in shallow water sections from Egypt to Morocco. (C) 2011 Elsevier Ltd. All rights reserved.

1209-006 Waterloo Creek Watershed Final Report

Waterloo Creek Watershed is a 30,610 acre area that straddles the Iowa and Minnesota border. The lower 43% of the watershed is in Iowa. Bee and Duck Creeks in Minnesota flow into Waterloo Creek in Iowa. Designated as a primary contact recreational stream as well as a high-quality, cold water stream in Iowa, Waterloo Creek is a popular destination for anglers and other nature enthusiasts. The stream was on the Iowa DNR’s “Impaired Waters List” in 2008 and 2010 for Escherichia coli (E. coli) bacteria. Samples collected in 2010 and 2011 showed higher levels of E. coli. at sites with cattle in close proximity to the stream and were generally greater after high rainfall events. Other factors affecting water quality are high turbidity levels and frequent flooding. There is a deficiency in upland land treatment and an abundance of conventional tillage which increases the amount of erosion and potential for surface runoff to carry sediment to the stream. A comprehensive watershed assessment and management plan have been completed for the watershed which identify the causes of and solutions to water quality impairments. The goals of this project are to 1) develop a formal working relationship between technical staff in Iowa and Minnesota, 2) identify specific locations for Best Management Practice (BMP) implementation, 3) reduce sediment loading to Waterloo Creek to improve aquatic habitat and decrease bacteria delivery, and 4) reduce flooding potential in the watershed. The following BMPs will be implemented to reach these goals: terraces, grade stabilization structures, pasture management, stream buffers, stream bank stabilization, and agricultural waste structures.

Avaliação da remoção de fármacos e de desreguladores endócrinos em águas de abastecimento por clarificação em escala de bancada

In this work, the efficiency of clarification treatment (coagulation, flocculation and sedimentation) with polyaluminum chloride (PAC) and aluminum sulfate (SA) as coagulants was evaluated in the removal of 7 microcontaminants (diclofenac - DCF, sulfamethoxazole - SMX, ethinylestradiol - EE2, bisphenol-A - BPA, estradiol - E2, estrone - E1 and estriol - E3) in water of low and high turbidity. The clarification treatment led to poor removal rates (40% at most) for all microcontaminants except SMX which exhibited intermediate removal efficiency (67 to 70%). Overall, PAC application yielded better performance compared to SA.

Water quality and fish populations of the Welland River, Ontario /

The water quality and fish populations of the Welland River were observed to decline with distance downstream. This coincided with increased agricultural , domestic and industrial waste loadings. The river upstream of the City of Welland received considerable loadings from agricultural sources. Centrarchids, sciaenids, ictalurids, cyprinids and esocids characterized this upper section of the river. Most of these species were tolerant of low dissolved oxygen concentrations and the high turbidity which prevailed there . The river near Port Robinson receives many industrial and domestic wastes as evidenced by the water quality data. The fish in this section were less abundant and the observed population was comprised almost solely of cyprinids. Further downstream, near Montrose, the Welland River received shock loads of chemical wastes that exceeded a specific conductance of ISiOOO ;umhos/cm. Few fish were captured at this site and those that were captured were considered to be transients. A review of the literature revealed that none of the common indices of water quality in use today could adequately predict the observed distributions. In addition to the above, the long-term trend (l3 yrs) of water quality of the lower Welland River revealed a gradual improvement. The major factor thought to be responsible for this improvement was the operation of the Welland Sewage Treatment Plant. The construction of the New Welland Ship Canal coincided with large fluctuations of the total solids and other parameters downstream. These conditions prevailed for a maximum of three years (1972- 1975)' Furthermore, spawning times and temperatures, geographic distributions, length-weight regressions and many other descriptive aspects of the ecology of some 26 species/ taxa of fish were obtained. Several of these species are rare or new to southern Ontario.

LiDAR mapping of tidal marshes for ecogeomorphological modelling in the TIDE project

The European research project TIDE (Tidal Inlets Dynamics and Environment) is developing and validating coupled models describing the morphological, biological and ecological evolution of tidal environments. The interactions between the physical and biological processes occurring in these regions requires that the system be studied as a whole rather than as separate parts. Extensive use of remote sensing including LiDAR is being made to provide validation data for the modelling. This paper describes the different uses of LiDAR within the project and their relevance to the TIDE science objectives. LiDAR data have been acquired from three different environments, the Venice Lagoon in Italy, Morecambe Bay in England, and the Eden estuary in Scotland. LiDAR accuracy at each site has been evaluated using ground reference data acquired with differential GPS. A semi-automatic technique has been developed to extract tidal channel networks from LiDAR data either used alone or fused with aerial photography. While the resulting networks may require some correction, the procedure does allow network extraction over large areas using objective criteria and reduces fieldwork requirements. The networks extracted may subsequently be used in geomorphological analyses, for example to describe the drainage patterns induced by networks and to examine the rate of change of networks. Estimation of the heights of the low and sparse vegetation on marshes is being investigated by analysis of the statistical distribution of the measured LiDAR heights. Species having different mean heights may be separated using the first-order moments of the height distribution.

An autonomic approach in swarm-array computing

Can autonomic computing concepts be applied to traditional multi-core systems found in high performance computing environments? In this paper, we propose a novel synergy between parallel computing and swarm robotics to offer a new computing paradigm, `Swarm-Array Computing' that can harness and apply autonomic computing for parallel computing systems. One approach among three proposed approaches in swarm-array computing based on landscapes of intelligent cores, in which the cores of a parallel computing system are abstracted to swarm agents, is investigated. A task gets executed and transferred seamlessly between cores in the proposed approach thereby achieving self-ware properties that characterize autonomic computing. FPGAs are considered as an experimental platform taking into account its application in space robotics. The feasibility of the proposed approach is validated on the SeSAm multi-agent simulator.

A Gentle/S approach to robot assisted neuro-rehabilitation

Movement disorders (MD) include a group of neurological disorders that involve neuromotor systems. MD can result in several abnormalities ranging from an inability to move, to severe constant and excessive movements. Strokes are a leading cause of disability affecting largely the older people worldwide. Traditional treatments rely on the use of physiotherapy that is partially based on theories and also heavily reliant on the therapists training and past experience. The lack of evidence to prove that one treatment is more effective than any other makes the rehabilitation of stroke patients a difficult task. UL motor re-learning and recovery levels tend to improve with intensive physiotherapy delivery. The need for conclusive evidence supporting one method over the other and the need to stimulate the stroke patient clearly suggest that traditional methods lack high motivational content, as well as objective standardised analytical methods for evaluating a patient's performance and assessment of therapy effectiveness. Despite all the advances in machine mediated therapies, there is still a need to improve therapy tools. This chapter describes a new approach to robot assisted neuro-rehabilitation for upper limb rehabilitation. Gentle/S introduces a new approach on the integration of appropriate haptic technologies to high quality virtual environments, so as to deliver challenging and meaningful therapies to people with upper limb impairment in consequence of a stroke. The described approach can enhance traditional therapy tools, provide therapy "on demand" and can present accurate objective measurements of a patient's progression. Our recent studies suggest the use of tele-presence and VR-based systems can potentially motivate patients to exercise for longer periods of time. Two identical prototypes have undergone extended clinical trials in the UK and Ireland with a cohort of 30 stroke subjects. From the lessons learnt with the Gentle/S approach, it is clear also that high quality therapy devices of this nature have a role in future delivery of stroke rehabilitation, and machine mediated therapies should be available to patient and his/her clinical team from initial hospital admission, through to long term placement in the patient's home following hospital discharge.

Comunidades zooplanctônicas como bioindicadoras da qualidade da água de quatro reservatórios da região semi-árida do Rio Grande do Norte

The response of zooplankton assemblages to variations in the water quality of four man-made lakes, caused by eutrophication and siltation, was investigated by means of canonical correspondence analysis. Monte Carlo simulations using the CCA eingenvalues as test statistics revealed that changes in zooplankton species composition along the environmental gradients of trophic state and abiogenic turbidity were highly significant. The species Brachionus calyciflorus, Thermocyclops sp. and Argyrodiaptomus sp. were good indicators of eutrophic conditions while the species Brachionus dolabratus, Keratella tropica and Hexarthra sp. were good indicators of high turbidity due to suspended sediments. The rotifer genus Brachionus was the most species-rich taxon, comprising five species which were associated with different environmental conditions. Therefore, we tested whether this genus alone could potentially be a better biological indicator of these environmental gradients than the entire zooplankton assemblages or any other random set of five species. The ordination results show that the five Brachionus species alone did not explain better the observed pattern of environmental variation than most random sets of five species. Therefore, this genus could not be selected as a target taxon for more intensive environmental monitoring as has been previously suggested by Attayde and Bozelli (1998). Overall, our results show that changes in the water quality of man-made lakes in a tropical semi-arid region have significant effects on the structure of zooplankton assemblages that can potentially affect the functioning of these ecosystems

Environmental and grazing influence on spatial variability of intertidal biofilm on subtropical rocky shores

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Zircon fission track and U-Pb dating methods applied to São Paulo and Taubaté Basins located in the southeast Brazil

Zircon samples from the Cenozoic São Paulo and Taubaté Basins and Mantiqueira Mountain Range (southeast Brazil) were concomitantly dated by zircon Fission Track Method (FTM) and in situ U-Pb dating method. While FTM detrital-zircon data are ideally used to provide low-temperature information, U-Pb single detrital grain ages record the time of zircon formation in igneous or high grade metamorphic environments. This methodology may be used to study the possible sources of the basins sediments. The results suggest that the São Paulo Basin is composed of sediments from just one source, the Mantiqueira Mountain Range. On the other hand, the Taubaté Basin presents further sediment sources besides the Mantiqueira Mountain Range. © 2012 Elsevier Ltd. All rights reserved.

Variação sazonal da comunidade protozooplanctônica em um ambiente oligotrófico tropical (reservatório de Ilha Solteira, Brasil)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Os recursos pesqueiros marinhos e estuarinos do Maranhão: biologia, tecnologia, socioeconomia, estado da arte e manejo

O estado do Maranhão possui um grande potencial pesqueiro; entretanto, a pesca foi excluída das prioridades governamentais e científicas. Considerando as lacunas de conhecimento existentes, este trabalho realizou um diagnóstico dos dados pretéritos e atuais disponíveis sobre a pesca no Estado, abordando o estado da arte, caracterização das embarcações e artes de pesca, além da análise de produção, espécies de valor comercial e socioeconomia dos atores sociais envolvidos. A partir do quadro visualizado foi possível delimitar a existência de 21 unidades, aqui denominadas de Sistema de Produção Pesqueira, por meio de um processo de subdivisões sucessivas da atividade pesqueira de acordo com a frota, prática ou arte de pesca, recursos explorados, ambiente, residência, relação de trabalho e renda do pescador e grau de isolamento da área de pesca. Para tanto, foram aplicados questionários com os diferentes atores sociais e vivência em campo. Os sistemas foram caracterizados segundo os aspectos econômicos, sociais, tecnológicos, ecológico e manejo, evidenciando-se uma ampla variedade de práticas e frotas, que atuam, predominantemente, em ambientes costeiros, com pequenas embarcações e artes de pescas simples, capturando diferentes espécies-alvo, principalmente das famílias Scianidae e Aridae. O quadro socioeconômico dos pescadores é de pobreza e abandono, com baixa organização social e pequena renda, precárias condições de moradia e nível educacional e acesso à saúde limitado. O mercado e a legislação têm propiciado o livre acesso aos recursos e práticas predatórias, comprometendo os recursos pesqueiros, que são explotados sem qualquer preocupação com a sustentabilidade, demonstrando insuficiências nas ações de manejo e gerenciamento. Na tentativa de detectar indicadores que estimem o estado de “saúde” dos sistemas utilizou-se a metodologia do Rapfish, através de um conjunto de atributos agrupados em cinco áreas temáticas: ecológica, econômica, social, tecnológica e manejo. Os resultados destacaram como bons indicadores: organização social, número de pescadores explorando o sistema; grau de escolaridade; uso de petrechos destrutivos; medidas de manejo governamentais e tradicionais. A relação de trabalho e renda foram bons critérios para diferenciar três tendências na finalidade das pescarias: subsistência, intermediárias e “semi-indutrial”. Alguns sistemas se destacaram como menos sustentável a exemplo das capturas de siris, que tem declinado por falta de manejo, deficiente organização social e a comercialização de fêmeas ovadas; e das pescarias de lagosta, que utilizam artes consideradas destrutivas. O sistema que envolve a captura de caranguejo sobressaiu-se pela existência de medidas de manejo tradicional e melhor gerenciamento do recurso pelos órgãos públicos. Assim, este estudo permitiu o uso de um sistema de referência para análise e monitoramento da sustentabilidade das pescarias regionais, com em indicadores científicos e/ou etnoconhecimento, que induziu ao surgimento de propostas de manejo norteadas pelo gerenciamento da pesca, organização social e educação ambiental. A seguir, foi realizado estudo de caso do sistema de produção que utilizam as embarcações de médio porte nas pescarias de Cynoscion acoupa utilizando como arte o malhão, para entrar em detalhes de um dos sistemas de produção. Essa escolha teve como base, os grandes volumes de captura, a grande abrangência da área de atuação desse sistema em todo o litoral do Estado, além do grande número de pescadores envolvidos nele, representando importante fonte de renda para o Estado. O estudo de caso prestou especial atenção aos saberes tradicionais da população no uso e na manutenção do recurso, complementados com estudos sobre a pesca e biologia reprodutiva de Cynoscion acoupa, capturadas na região da baía de São Marcos e adjacências. As capturas das pescadas-amarela ocorreram durante todo o ano com safra no início do período chuvoso, e produção estadual estimada em 10.600.00 kg/ano. Verificou-se que este sistema vem sofrendo intensa e desordenada exploração, sendo possível inferir pelas características biológicas da espécie, que o crescente nível de esforço não é compatível com a capacidade de suporte ambiental nem como as necessidades dos pescadores. Quanto aos parâmetros reprodutivos, verificou-se que o comprimento médio de primeira maturação sexual (L50) para os machos foi de 39,9 cm e para as fêmeas a primeira maturação sexual ocorreu com tamanho ligeiramente superior, 41,6 cm de comprimento total. A proporção sexual foi de 1:1,4 favorável aos machos. Constatou-se que a espécie em questão completa todo o seu ciclo de vida na área estudada; o processo reprodutivo ocorre durante todo o ano, com dois picos de desova, um no bimestre novembro/dezembro e outro em março/maio. Acredita-se que por meio das informações obtidas é possível subsidiar melhores propostas e ações de sustentabilidade desta pescaria, combinando o etno-conhecimento e o conhecimento científico deste sistema.