Flexible synthesis of enantiomerically pure 2,8-dialkyl-1,7-dioxaspiro[5.5]undecanes and 2,7-dialkyl-1,6-dioxaspiro[4.5]decanes from propargylic and homopropargylic alcohols

A new approach to enantiomerically pure 2,8-dialkyl-1,7-dioxaspiro[5.5]undecanes and 2,7-dialkyl-1,6-dioxaspiro [4.5] decanes is described and utilizes enantiomerically pure homopropargylic alcohols obtained from lithium acetylide opening of enantiomerically pure epoxides, which are, in turn, acquired by hydrolytic kinetic resolution of the corresponding racemic epoxides. Alkyne carboxylation and conversion to the Weinreb amide may be followed by triple-bond manipulation prior to reaction with a second alkynyllithium derived from a homo- or propargylic alcohol. In this way, the two ring components of the spiroacetal are individually constructed, with deprotection and cyclization affording the spiroacetal. The procedure is illustrated by acquisition of (2S,5R,7S) and (2R,5R,7S)-2-n-butyl-7-methyl-1,6-dioxaspiro[4.5]-decanes (1), (2S,6R,8S)-2-methyl-8-n-pentyl-1,7-dioxaspiro[5.5]undecane (2), and (2S,6R,8S)-2-methyl-8-n-propyl-1,7-dioxaspiro[5.5]undecane (3). The widely distributed insect component, (2S,6R,8S)-2,8-dimethyl-1,7-dioxaspiro[5.5]undecane (4), was acquired by linking two identical alkyne precursors via ethyl formate. In addition, [H-2(4)]-regioisomers, 10,10,11,11-[H-2(4)] and 4,4,5,5-[H-2(4)] of 3 and 4,4,5,5-[H-2(4)]-4, were acquired by triple-bond deuteration, using deuterium gas and Wilkinson's catalyst. This alkyne-based approach is, in principle, applicable to more complex spiroacetal systems not only by use of more elaborate alkynes but also by triple-bond functionalization during the general sequence.

Synthesis, characterization and crystal structure of a charge transfer salt based on 1.3-cyclopentadiene tetrabutylammoniumdodecamolybdosilicoate

A charge transfer salt, (Bu4N)(4) (C5H6)[(HSiMo11MoO40)-Mo-VI-O-V] has been photochemically synthesized from (Bu4N)(4)SiMo12O40 and 1.3-cyclopentadiene and Characterized, by elemental analysis, IR spectra, solid diffusion reflectance electronic spectra, CV and ESR. The X-ray crystal structure revealed that the title complex crystal data are as follows: triclinic, space group P (1) over bar, a = 14.347(3), b = 14.423(3), c = 27.158(5) Angstrom, alpha = 96.90(3), beta = 104.18(3), gamma = 98.20(3)degrees, V = 5322(2) Angstrom (3), Z = 2, M-r = 2855. 30, D-c = 1.782g.cm(-3), F(000) = 2860, R = 0.0719, wR = 0.198. The title compound is composed of 1.3-cyclopentadiene, four tetrabutylammonium and [(SiMo11MoO40)-Mo-VI-O-V](4-) anion.

Efeito do macrodipolo sobre a estabilidade térmica de derivados de 1,3,5-tricarboxamida-ciclo-hexano

1,3,5-tricarboxamida-ciclo-hexano são compostos capazes de se autoagregarem formando colunas supramoleculares as quais se mantêm unidas não só devido às interações das cadeias laterais mas também devido às ligações de hidrogênio de cada um dos três grupos amida por monômero. Cada monômero possui momento de dipolo elétrico associado aos grupos amida. Quando as amidas dos vários monômeros dentro da mesma coluna estão apontadas para a mesma direção, os momentos de dipolo individuais de todas as amidas se somam formando elevado dipolo ao longo do eixo da coluna, chamado de macrodipolo, o qual influencia as interações intercolunares. Neste trabalho foram investigadas quatro conformações as quais diferem entre si em relação à orientação dos grupos carbonila: a conformação Up-Up contém grupos carbonilas paralelos dentro das colunas e colunas paralela, a conformação Up-Down possui grupos carbonilas paralelos dentro das colunas e colunas antiparalelas, a conformação Intra-Up-Up contém grupos carbonilas antiparalelos dentro das colunas e colunas paralelas e a conformação Intra-Up-Down possui grupos carbonilas antiparalelos dentro das colunas e colunas antiparalelas. Foi usado Dinâmica Molecular Clássica para investigar o efeito das interações macrodipolo-macrodipolo das quatro diferentes conformações sobre a estabilidade térmica de três diferentes compostos derivados de 1,3,5-tricarboxamida-ciclo-hexano. Foi verificado que as conformações com colunas antiparalelas tendem a ser ligeiramente mais estáveis do que as conformações com orientação paralela. O efeito da orientação dos grupos carbonila dentro das colunas sob a estabilidade do material está relacionado a vários fatores, tais como cargas atômicas parciais, arranjo colunar ou natureza das cadeias laterais, e os resultados não são tão diretos como quando se compara as orientações entre colunas. Outro tópico investigado foi o comportamento do material durante a transição da fase colunar para a fase desordenada. As colunas podem se desmontar em três diferentes formas: elas podem completamente se desintegrar rapidamente, podem primeiro se desintegrar lentamente e então perder a ordem colunar ou primeiro perdem a ordem colunar e então se desmontam em um processo demorado. Tais comportamentos estão associados com as interações dentro e entre colunas.

Synthesis of 1,3-diazepines and ring contraction to cyanopyrroles

Several tetrazolo[1,5-a] pyridines/2-azidopyridines undergo photochemical nitrogen elimination and ring expansion to 1,3-diazacyclohepta-1,2,4,6-tetraenes (7,10,13,16,19,22) as well as ring cleavage to cyanovinylketenimines (8,17,20b) in low temperature Ar matrices. 6,8-Dichlorotetrazolo[1,5-a] pyridine/2-azido-3,5-dichloropridine 6 undergoes ready exchange of the chlorine in position 8 (3) with ROH/RONa. 8-Chloro-6-trifluoromethyltetrazolo[1,5-a] pyridine 15 undergoes solvolysis of the CF3 group to afford 8-chloro-6-methoxycarbonyltetrazolo[1,5-a] pyridine 18. Several tetrazolopyridines/2-azidopyridines afford 1H- or 5H-1,3-diazepines in good yields on photolysis in the presence of alcohols or amines (11,14,23,25). 5-Chlorotetrazolo[1,5-a] pyridines/2-azido-6-chloropyridines 21 and 38 undergo a rearrangement to 1H- and 3H-3-cyanopyrroles 27 and 45, respectively. The mechanism of this rearrangement was investigated by N-15-labelling and takes place via transient 1,3-diazepines. The structures of 6,8-dichloro-tetrazolo[1,5-a] pyridine 6T, 6-chloro-8-ethoxytetrazolo[1,5-a] pyridine 9Tb, dipyrrolylmethane 28, and 2-isopropoxy-4-dimethylamino-5H-1,3-diazepine 25b were determined by X-ray crystallography. In the latter case, this represents the first reported X-ray crystal structure of a 5H-1,3-diazepine.

The 4-aza-S-ribosyl-L-homocysteine derivatives and the related gamma-lactam and azahemiacetal analogs: Synthesis, inhibition and quorum sensing activity

Quorum sensing (QS) is a population-dependent signaling process bacteria use to control multiple processes including virulence, critical for establishing infection. There are two major pathways of QS systems. Type 1 is species specific or intra-species communication in which N-acylhomoserine lactones (Gram-negative bacteria) or oligopeptides (Gram-positive bacteria) are employed as signaling molecules (autoinducer one). Type 2 is inter-species communication in which S-4,5-dihydroxy-2,3-pentanedione (DPD) or its borate esters are used as signaling molecules. The DPD is biosynthesized by LuxS enzyme from S-ribosylhomocysteine (SRH). Recent increase in prevalence of bacterial strains resistant to antibiotics emphasizes the need for the development of new generation of antibacterial agents. Interruption of QS by small molecules is one of the viable options as it does not affect bacterial growth but only virulence, leading to less incidence of microbial resistance. Thus, in this work, inhibitors of both N-acylhomoserine lactone (AHL) mediated intra-species and LuxS enzyme, involved in inter-species QS are targeted. The γ-lactam and their reduced cyclic azahemiacetal analogs, bearing the additional alkylthiomethyl substituent, were designed and synthesized targeting AHL mediated QS systems in P. aeruginosa and Vibrio harveyi. The γ-lactams with nonylthio or dodecylthio chains acted as inhibitors of las signaling in P. aeruginosa with moderate potency. The cyclic azahemiacetal with shorter propylthio or hexylthio substituent were found to strongly inhibit both las and rhl signaling in P. aeruginosa at higher concentrations. However, lactam and their azahemiacetal analogs were found to be inactive in V. harveyi QS systems. The 4-aza-S-ribosyl-L-homocysteine (4-aza-SRH) analogs and 2-deoxy-2-substituted-S-ribosyl-L-homocysteine analogs were designed and synthesized targeting Bacillus subtilis LuxS enzyme. The 4-aza-SRH analogs in which oxygen in ribose ring is replaced by nitrogen were further modified at anomeric position to produce pyrrolidine, lactam, nitrone, imine and hemiaminal analogs. Pyrrolidine and lactam analogs which lack anomeric hydroxyl, acted as competitive inhibitors of LuxS enzyme with KI value of 49 and 37 µM respectively. The 2,3-dideoxy lactam analogs were devoid of activity. Such findings attested the significance of hydroxyl groups for LuxS binding and activity. Hemiaminal analog of SRH was found to be a time-dependent inhibitor with IC50 value of 60 µM.

Elucidation of the conformational free energy landscape in H.pylori LuxS and its implications to catalysis

Background: One of the major challenges in understanding enzyme catalysis is to identify the different conformations and their populations at detailed molecular level in response to ligand binding/environment. A detail description of the ligand induced conformational changes provides meaningful insights into the mechanism of action of enzymes and thus its function. Results: In this study, we have explored the ligand induced conformational changes in H. pylori LuxS and the associated mechanistic features. LuxS, a dimeric protein, produces the precursor (4,5-dihydroxy-2,3-pentanedione) for autoinducer-2 production which is a signalling molecule for bacterial quorum sensing. We have performed molecular dynamics simulations on H. pylori LuxS in its various ligand bound forms and analyzed the simulation trajectories using various techniques including the structure network analysis, free energy evaluation and water dynamics at the active site. The results bring out the mechanistic details such as co operativity and asymmetry between the two subunits, subtle changes in the conformation as a response to the binding of active and inactive forms of ligands and the population distribution of different conformations in equilibrium. These investigations have enabled us to probe the free energy landscape and identify the corresponding conformations in terms of network parameters. In addition, we have also elucidated the variations in the dynamics of water co-ordination to the Zn2+ ion in LuxS and its relation to the rigidity at the active sites. Conclusions: In this article, we provide details of a novel method for the identification of conformational changes in the different ligand bound states of the protein, evaluation of ligand-induced free energy changes and the biological relevance of our results in the context of LuxS structure-function. The methodology outlined here is highly generalized to illuminate the linkage between structure and function in any protein of known structure.

1,3—双烯聚合物的环化

采用AlEt2Cl－C6H5CH2Cl体系成功地对聚异戊二烯、聚了二烯、聚氯丁二烯3种1，3—双烯聚合物进行了环化，并对环化过程进行了比较。

钴与5－Cl－PADAB反应机理及其应用的研究

对钴与４－［（５－氯－２－吡啶）偶氮］－１，３－二氨基苯（５－Ｃｌ－ＰＡＤＡＢ）形成络合物的吸收光谱进行探讨，结果表明：试剂及络合物在不同酸度条件下形成不同型体。在酸性条件下，络合物为大阳离子，钴离子以三价形式存在，钻与试剂的络合比为１：２。在强酸性介质中，将此络合物用于光度测定钻，方法选择性及稳定性好，且灵敏度极高。对水、粮食、土壤、茶叶及维生素Ｂ＿（１２）中微量钻进行直接测定，获得满意结果。

Effect of beta 1,3 glucan in stress responses of the pencilfish (Nannostomus trifasciatus) during transport within the rio Negro basin

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Further Withaphysalin Derivatives from Acnistus arborescens

Two new epimeric chlorinated withaphysalins, rel-(4 beta,5 beta,6 alpha,18S,22R)- and rel-(4 beta,5 beta,6 alpha,18R,22R)-6-chloro-18,20-epoxy-18-ethoxy-4,5-dihydroxy-1- oxowitha-2,24-diene-26,22-lactone (1 and 2 resp.), together with the new rel-(4 beta,5 beta,6a,18R,22R)-6-chloro-18,20-epoxy-4,5-dihydroxy-18-methoxy-1-oxowitha-2,24-diene-26,22-lactone (3) and rel-(3 beta,4 beta,5 beta,6 beta,18R,22R)-5,6:18,20-diepoxy-3,18-diethoxy-4-hydroxy-1-oxowith-24-ene-26,22-lactone (4) were isolated from the leaves of Acnistus arborescens and named withaphysalins TW, respectively. The final structures and the complete 1H- and 13C-NMR assignments of the three chlorowithaphysalins 13 were performed by means of HR-ESI-MS and 1D- and 2D-NMR experiments, including COSY, HSQC, and HMBC, beside comparison with spectral data of analogous compounds from the literature. The structure of 4 was also confirmed by means of a single-crystal X-ray diffraction analysis.

A stable rearrangement product of humulene-4,5-epoxide

Humulene-4,5-monoepoxide, 1, may rearrange to the cyclopropyl diol 2 during chromatography over silica. The rearrangement can be reversed with acid.

Synthesis of some functionalised isomeric bis(ethylenedithio)tetrathiafulvalene (BEDT-TTF) and dithiophenetetrathiafulvalene (DTTTF) pi-donors

The synthesis of some functionalised isomeric, symmetrical tetrathiafulvalene derivatives containing 4,5-(ethylenedithio)-1,3-dithiole and 4,5-(propylenedithio)-1,3-dithiole units is described. These contain hydroxy, chloro and cyano functionalities (4, 6, 9 and 12). Interestingly, attempted coupling of 4,5-bis(propargylthio)-1,3-dithiole-2-thione 13, to obtain the corresponding TTF, 14 afforded the novel thione, 5-methylthieno[2,3-d]-1,3-dithiole-2-thione 15. Self coupling of thione 15 in the presence of trimethyl phosphite afforded new functionalised dithiophenetetrathiafulvalene 16. The X-ray crysal structures of 4,5-bis(propargyldithio)-1,3-dithiole-2-thione 13 and 5-methylthieno[2,3-d]-1,3-dithiole-2-thione 15 are described. (C) 1997 Elsevier Science Ltd.

稀土苯多酸络合物的合成及其性质的研究

苯多酸作为配体，因有多个可参与配位的羧基，因此，可以和稀土离子生成不同配比而结构特殊的化合物，同时这类化合物具有一系列有趣的性质。本论文选择1,2,4,5-苯四酸（H_4L），1,3,5-苯三酸（H_3L_I），1,2,4-苯三酸（H_3L_(II)）和1,2,3-苯三酸（H_3L_(III)）作为配体，合成了除P_m以外的十四个镧系元素和Y的络合物。对于稀土和均苯四酸的络合物，除得到了文献曾报导过的4:3组成外，还合成了一个新的系列，其组成为1:1的络合物：Ln·HL·nH_2O(Ln = La-Gd，Er，Y)和Ln·L·NH_4·nH_2O(Ln=Eu，Tb-Lu)。培养出了未见文献报导的稀土Er与均苯四酸络合物的单晶，晶体结构分析指出其组成为[ Er·L·3H_2O]·NH_4·4H_2O，中心离子和配体形成八配位络阴离子，呈畸变的四方反棱柱结构。对所合成的稀土苯多酸络合物（除稀土和1,2,3-苯三酸络合物外），进行了热分析研究，结果表明这类络合物具有很高的热稳定性，空气中，除Ce外，其分解温度均大于420 ℃。指出了络合物热分解机理，对于绝大部分稀土苯多酸络合物。分解分两步进行，第一步络合物脱水，第二步分解为氧化物。镧的苯多酸络合物其分解过程经碱式碳酸盐（LaO）_2 CO_3，最后分解为La_2O_3。络合物DTA分解峰温随稀土原子序有规律地变化，且不同的苯多酸系列络合物呈类似的变化规律，变价元素处于曲线峰谷的位置。测定Ln_4L_3·nH_2O系列络合物的脱水热及脱水和分解表观活化能。系统地研究了络合物在4000-100cm~(-1)范围内的FT-IR光谱，通过对羧基反对称和对称伸缩振动的分析，指出了络合物中羧基的可能配位形式。对组成为Ln·HL·nH_2O(Ln=La-Gd，Y)，Ln·L·NH_4·nH_2O (Ln=Tb-Lu)，LnL_I·nH_2O (Ln = La-Ho)和LnL_(II)·nH_2O (Ln=Pr-Tm)的络合物，指认了Ln-O链伸缩振动，其振动频率随稀土离子总角动量量子数呈类似“斜W”效应的变化。对于Ln_4L_3·nH_2O，LnL_I·nH_2O和LnL_(II)·nH_2O络合物，随着配体的不同，羧基反对称和对称伸缩振动频率差ΔV以ΔV_(1,3,5)BTA > ΔV_(PMA) > ΔV_(1,2,4)BTA的规律变化。研究了Eu和Tb苯多酸铬合物的萤光相对亮度及其萤光光谱，对Tb络合物，其萤光相对亮度随配体结构的变化有如下变化规律：PMA > 1,2,4 BTA≥1,2,3 BTA > 1,3,5 BTA。Tb的PMA络合物由于其发光强度较大，有可能在实际中得到应用。