Genetic parameters by Bayesian inference for dual purpose Jaffarabadi buffaloes

Knowledge of genetic parameters is essential for improved reproductive management and increased yield. Quantitative analysis of genetic parameters is lacking for many breeds of buffaloes. This article provides the first estimate of genetic parameters for dual purpose (meat and milk) Brazilian Jaffarabadi buffaloes, using Bayesian inference. Data on milk yield (MY), lactation length (LL), weight at 205 days (W205) and 365 (W365) days of age, and average daily gain (ADG) from 205 to 365 days of age were collected in two herds. Bivariate analyses (using the program MTGSAM) were performed with the Gibbs sampler to obtain estimates of variance and covariance. Average lactation milk yield and lactation length were 1 620.2 +/- 450.9 kg and 257.6 +/- 46.8 days, respectively, and the mean values for weight traits (kg) were 181.6 +/- 63.3 (W205), 298.04 +/- 116.1 (W365), and 0.73 +/- 0.35 (ADG). Heritability estimates (modes) were 0.16 for MY, 0.10 for LL, 0.43 for W205, 0.48 for W365 and 0.32 for ADG. There was a high genetic correlation (0.96) between milk yield and lactation length and very high genetic correlations (0.99) between the three growth traits. Our data suggest that both milk production and growth traits have clear potential for yield improvement through direct selection in this dual purpose breed. The selection for weight at an early age would be successful and selection for MY can be performed in the first lactation.

Additive genetic relationships between scrotal circumference, heifer pregnancy, and stayability in Nellore cattle

Scrotal circumference data from 47,605 Nellore young bulls, measured at around 18 mo of age (SC18), were analyzed simultaneously with 27,924 heifer pregnancy (HP) and 80,831 stayability (STAY) records to estimate their additive genetic relationships. Additionally, the possibility that economically relevant traits measured directly in females could replace SC18 as a selection criterion was verified. Heifer pregnancy was defined as the observation that a heifer conceived and remained pregnant, which was assessed by rectal palpation at 60 d. Females were exposed to sires for the first time at about 14 mo of age (between 11 and 16 mo). Stayability was defined as whether or not a cow calved every year up to 5 yr of age, when the opportunity to breed was provided. A Bayesian linear-threshold-threshold analysis via Gibbs sampler was used to estimate the variance and covariance components of the multitrait model. Heritability estimates were 0.42 +/- 0.01, 0.53 +/- 0.03, and 0.10 +/- 0.01, for SC18, HP, and STAY, respectively. The genetic correlation estimates were 0.29 +/- 0.05, 0.19 +/- 0.05, and 0.64 +/- 0.07 between SC18 and HP, SC18 and STAY, and HP and STAY, respectively. The residual correlation estimate between HP and STAY was -0.08 +/- 0.03. The heritability values indicate the existence of considerable genetic variance for SC18 and HP traits. However, genetic correlations between SC18 and the female reproductive traits analyzed in the present study can only be considered moderate. The small residual correlation between HP and STAY suggests that environmental effects common to both traits are not major. The large heritability estimate for HP and the high genetic correlation between HP and STAY obtained in the present study confirm that EPD for HP can be used to select bulls for the production of precocious, fertile, and long-lived daughters. Moreover, SC18 could be incorporated in multitrait analysis to improve the prediction accuracy for HP genetic merit of young bulls.

Joint control charts for monitoring location and dispersion

The T-2 and the generalized variance vertical bar S vertical bar charts are used for monitoring the mean vector and the covariance matrix of multivariate processes. In this article, we propose for bivariate processes the use of the T-2 and the VMAX charts. The points plotted on the VMAX chart correspond to the maximum of the sample variances of the two quality characteristics. The reason to consider the VMAX statistic instead of the generalized variance vertical bar S vertical bar is the user's familiarity with the computation of simple sample variances; we can't say the same with regard to the computation of the generalized variance vertical bar S vertical bar.

Selection of alfalfa cultivars adapted for tropical environments with repeated measures using PROC MIXED of SAS (R) System

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

An alternative prescription for gauging Floreanini-Jackiw chiral bosons

We seek new couplings of chiral bosons to U(1) gauge fields. Lorentz covariance of the resulting constrained lagrangian is checked with the help of a procedure based in the first-order formalism of Faddeev and Jackiw. We find Harada's constraint and another local one not previously considered. We analyze the constraint structure and part of the spectrum of this second solution and show that it is equivalent to an explicitly covariant coupling of Siegel's chiral boson to gauge fields, which preserves chirality under gauge transformations.

On discrete symmetries of the multi-boson KP hierarchies

We show that the multi-boson KP hierarchies possess a class of discrete symmetries linking them to discrete Toda systems. These discrete symmetries are generated by the similarity transformation of the corresponding Lax operator. This establishes a canonical nature of the discrete transformations. The spectral equation, which defines both the lattice system and the corresponding Lax operator, plays a key role in determining pertinent symmetry structure. We also introduce the concept of the square root lattice leading to a family of new pseudo-differential operators with covariance under additional Bäcklund transformations.

Rede neural não supervisionada baseada em transformada Karhunen-Loève para processamento, compressão e reconhecimento de imagens

The merit of the Karhunen-Loève transform is well known. Since its basis is the eigenvector set of the covariance matrix, a statistical, not functional, representation of the variance in pattern ensembles is generated. By using the Karhunen-Loève transform coefficients as a natural feature representation of a character image, the eigenvector set can be regarded as an feature extractor for a classifier.

Comparing river basins world-wide and contrasting inland fisheries in Africa and Central Amazonia

An analysis of covariance relating basin area (A, km2) to river length (L, km) and discharge rate (D, m3 s-1) was performed for two continents and showed that the two covariates (L and D) were highly significant and that the strength of the relationship changed between continents. For comparison, D was excluded but the result remained the same. Although geomorphological models are useful for establishing global levels of production, these regressions should be applied with caution. Historically, simple statistical models were developed to predict fish catches in rivers. These, based upon regression of catches on channel length or basin area for Africa and Central Amazonia, are contrasted in this paper because of their generally similar approach.

Probing negative-dimensional integration: Two-loop covariant vertex and one-loop light-cone integrals

The negative-dimensional integration method (NDIM) seems to be a very promising technique for evaluating massless and/or massive Feynman diagrams. It is unique in the sense that the method gives solutions in different regions of external momenta simultaneously. Moreover, it is a technique whereby the difficulties associated with performing parametric integrals in the standard approach are transferred to a simpler solving of a system of linear algebraic equations, thanks to the polynomial character of the relevant integrands. We employ this method to evaluate a scalar integral for a massless two-loop three-point vertex with all the external legs off-shell, and consider several special cases for it, yielding results, even for distinct simpler diagrams. We also consider the possibility of NDIM in non-covariant gauges such as the light-cone gauge and do some illustrative calculations, showing that for one-degree violation of covariance (i.e. one external, gauge-breaking, light-like vector n μ) the ensuing results are concordant with the ones obtained via either the usual dimensional regularization technique, or the use of the principal value prescription for the gauge-dependent pole, while for two-degree violation of covariance - i.e. two external, light-like vectors n μ, the gauge-breaking one, and (its dual) n * μ - the ensuing results are concordant with the ones obtained via causal constraints or the use of the so-called generalized Mandelstam-Leibbrandt prescription. © 1999 Elsevier Science B.V.

Comparing the tadpoles of Hyla geographica and Hyla semilineata

External morphology, internal oral anatomy, and chondrocranial anatomy were examined for tadpoles of Hyla geographica from the Amazon rainforest, Brazil, and Hyla semilineata from the Atlantic rainforest, Brazil. Here, we provide morphological larval data to help diagnose these closely related species. Scanning electron microscopy analysis of buccal morphology showed the most distinctive features between these species: the distance between the lingual papillae in the buccal floor of H. geographica is three times greater than that distance in H. semilineata, and the relative size of the lingual papillae in H. geographica is less than half their size in H. semilineata. Although the chondrocranium of both species is identical, and the external morphology of the larvae of both taxa is very similar, they differ greatly in size at most developmental stages. A multivariate analysis of covariance, corrected for stage and size, also showed a significant difference between morphometric measurements of the two species. These differences support the existence of two separate taxa.

Line based camera calibration in machine vision dynamic applications

The problem of dynamic camera calibration considering moving objects in close range environments using straight lines as references is addressed. A mathematical model for the correspondence of a straight line in the object and image spaces is discussed. This model is based on the equivalence between the vector normal to the interpretation plane in the image space and the vector normal to the rotated interpretation plane in the object space. In order to solve the dynamic camera calibration, Kalman Filtering is applied; an iterative process based on the recursive property of the Kalman Filter is defined, using the sequentially estimated camera orientation parameters to feedback the feature extraction process in the image. For the dynamic case, e.g. an image sequence of a moving object, a state prediction and a covariance matrix for the next instant is obtained using the available estimates and the system model. Filtered state estimates can be computed from these predicted estimates using the Kalman Filtering approach and based on the system model parameters with good quality, for each instant of an image sequence. The proposed approach was tested with simulated and real data. Experiments with real data were carried out in a controlled environment, considering a sequence of images of a moving cube in a linear trajectory over a flat surface.

Diet, phylogeny, and basal metabolic rate in phyllostomid bats

Aside from the pervasive effects of body mass, much controversy exists as to what factors account for interspecific variation in basal metabolic rates (BMR) of mammals; however, both diet and phylogeny have been strongly implicated. We examined variation in BMR within the New World bat family Phyllostomidae, which shows the largest diversity of food habits among mammalian families, including frugivorous, nectarivorous, insectivorous, carnivorous and blood-eating species. For 27 species, diet was taken from the literature and BMR was either measured on animals captured in Brazil or extracted from the literature. Conventional (nonphylogenetic) analysis of covariance (ANCOVA), with body mass as the covariate, was first used to test the effects of diet on BMR. In this analysis, which assumes that all species evolved simultaneously from a single ancestor (i.e., a star phylogeny), diet exerted a strong effect on mass-in-dependent BMR: nectarivorous bats showed higher mass-independent BMR than other bats feeding on fruits, insects or blood. In phylogenetic ANCOVAs via Monte Carlo computer simulation, which assume that species are part of a branching hierarchical phylogeny, no statistically significant effect of diet on BMR was observed. Hence, results of the nonphylogenetic analysis were misleading because the critical values for testing the effect of diet were underestimated. However, in this sample of bats, diet is perfectly confounded with phylogeny, because the four dietary categories represent four separate subclades, which greatly reduces statistical power to detect a diet (= subclade) effect. But even if diet did appear to exert an influence on BMR in this sample of bats, it would not be logically possible to separate this effect from the possibility that the dietary categories differ for some other reason (i.e., another synapomorphy of one or more of the subclades). Examples such as this highlight the importance of considering phylogenetic relationships when designing new comparative studies, as well as when analyzing existing data sets. We also discuss some possible reasons why BMR may not coadapt with diet. © by Urban & Fischer Verlag.

The Ramond sector of open superstring field theory

Although the equations of motion for the Neveu-Schwarz (NS) and Ramond (R) sectors of open superstring field theory can be covariantly expressed in terms of one NS and one R string field, picture-changing problems prevent the construction of an action involving these two string fields. However, a consistent action can be constructed by dividing the NS and R states into three string fields which are real, chiral and antichiral. The open superstring field theory action includes a WZW-like term for the real field and holomorphic Chern-Simons-like terms for the chiral and antichiral fields. Different versions of the action can be constructed with either manifest d = 8 Lorentz covariance or manifest TV = 1 d = 4 super-Poincaré covariance. The lack of a manifestly d = 10 Lorentz covariant action is related to the self-dual five-form in the type-IIB R-R sector.

Interference phenomena, chiral bosons, and Lorentz invariance

We have studied the theory of gauged chiral bosons and proposed a general theory, a master action, that encompasses different kinds of gauge field couplings in chiral bosonized theories with first-class chiral constraints. We have fused opposite chiral aspects of this master action using the soldering formalism and applied the final action to several well-known models. The Lorentz rotation permitted us to fix conditions on the parameters of this general theory in order to preserve the relativistic invariance. We also have established some conditions on the arbitrary parameter concerned in a chiral Schwinger model with a generalized constraint, investigating both covariance and Lorentz invariance. The results obtained supplement the one that shows the soldering formalism as a new method of mass generation. ©2001 The American Physical Society.

Estudo de modelo alternativo para estimação de componentes de (co)variância e predição de valores genéticos de características de crescimento em bovinos da raça Nelore

The objectives of this study were to estimate genetic parameters for non-standardized weights at nursing (PR120), at weaning (PR240), at yearling (PR365) and at post yearling (PR550), and to predict EPD's (expected progeny differences) for these traits using records from 29,769 Nellores. Covariance components and genetic parameters were estimated by mixed-model methodology, REML, using an animal model. Models for PR120, PR240, PR365 and PR455 included the random direct and maternal animal effects, the dam permanent environmental effect and the error. Fixed effects were contemporary group (CG) and age of cow at parturition (CIVP) and the covariate age of the calf at measuring. Two additional models for PR365, PR455 and PR550 analyses were used: the first included CG and CIVP, animal and maternal direct effect, residual and age of the calf (as covariate), and the second included CG and CIVP (as fixed effects), animal direct effect, residual and age of calf at measuring. Observed means±standard deviations were: 127±25kg (PR120); 191±34kg (PR240); 225±42kg (PR365); 266±51kg (PR455) and 310±56kg (PR550). From single-trait analyses, direct and maternal heritabilities for PR120, PR240, PR365 and PR455 were, respectively, .23 and .08; .19 and .10; .24 and .04; .30 and .04. Direct heritabilities were .39; .44 and .43, respectively, for PR365, PR455 and PR550. In the model without permanent effect, direct and maternal heritabilities for PR365, PR455 and PR550 were .25 and .08; .32 and .07; .38 and .03, respectively. When the estimates for standardized traits at the same period were compared, no differences in magnitude were found. Rank correlation had important changes when standardized and non-standardized traits were compared.