Nucleosome core protein: Asymmetric dissociation of the octamer

The octameric nucleosomal core-histone complex, (H2A)2-(H2B)2-(H3)2-(H4)2, isolated from rat liver, undergoes dissociation during gel exclusion chromatography as a result of dilution occurring in the columns. The elution pattern at pH 7.0 and 4°C showed a sharp leading peak containing all four histones but predominantly H3 and H4, and a trailing peak containing equal amounts of histones H2A and H2B. As column length was increased the area under the leading peak decreased and that under the trailing peak increased. In addition the relative positions of the two peaks varied with column length. From an analysis of the data on increase in elution volume of the leading peak in relation to column length an apparent molecular weight of 86 000 was calculated for the undissociated molecule. Its apparent molecular weight, histone composition and pattern of further dissociation in relation to column length suggest that this species is the hexamer, (H2A-H2B)-(H3)2-(H4)2. At pH 7.0 and 4°C the dissociation of the core complex appears to be as follows: (H2A)2-(H2B)2-(H3)2-(H4)2 → (H2A-H2B) + (H2A-H2B)-(H3)2-(H4)2 → 2(H2A-H2B) + (H3)2-(H4)2 This dissociation was accelerated by an increase in temperature or decrease in pH and was accompanied by marked conformational changes as judged by circular dichroism measurements.

A Framework for Detecting Glaucomatous Progression in the Optic Nerve Head of an Eye Using Proper Orthogonal Decomposition

Glaucoma is the second leading cause of blindness worldwide. Often, the optic nerve head (ONH) glaucomatous damage and ONH changes occur prior to visual field loss and are observable in vivo. Thus, digital image analysis is a promising choice for detecting the onset and/or progression of glaucoma. In this paper, we present a new framework for detecting glaucomatous changes in the ONH of an eye using the method of proper orthogonal decomposition (POD). A baseline topograph subspace was constructed for each eye to describe the structure of the ONH of the eye at a reference/baseline condition using POD. Any glaucomatous changes in the ONH of the eye present during a follow-up exam were estimated by comparing the follow-up ONH topography with its baseline topograph subspace representation. Image correspondence measures of L-1-norm and L-2-norm, correlation, and image Euclidean distance (IMED) were used to quantify the ONH changes. An ONH topographic library built from the Louisiana State University Experimental Glaucoma study was used to evaluate the performance of the proposed method. The area under the receiver operating characteristic curves (AUCs) was used to compare the diagnostic performance of the POD-induced parameters with the parameters of the topographic change analysis (TCA) method. The IMED and L-2-norm parameters in the POD framework provided the highest AUC of 0.94 at 10 degrees. field of imaging and 0.91 at 15 degrees. field of imaging compared to the TCA parameters with an AUC of 0.86 and 0.88, respectively. The proposed POD framework captures the instrument measurement variability and inherent structure variability and shows promise for improving our ability to detect glaucomatous change over time in glaucoma management.

Estimating daily methane production in individual cattle with irregular feed intake patterns from short-term methane emission measurements

Spot measurements of methane emission rate (n = 18 700) by 24 Angus steers fed mixed rations from GrowSafe feeders were made over 3- to 6-min periods by a GreenFeed emission monitoring (GEM) unit. The data were analysed to estimate daily methane production (DMP; g/day) and derived methane yield (MY; g/kg dry matter intake (DMI)). A one-compartment dose model of spot emission rate v. time since the preceding meal was compared with the models of Wood (1967) and Dijkstra et al. (1997) and the average of spot measures. Fitted values for DMP were calculated from the area under the curves. Two methods of relating methane and feed intakes were then studied: the classical calculation of MY as DMP/DMI (kg/day); and a novel method of estimating DMP from time and size of preceding meals using either the data for only the two meals preceding a spot measurement, or all meals for 3 days prior. Two approaches were also used to estimate DMP from spot measurements: fitting of splines on a 'per-animal per-day' basis and an alternate approach of modelling DMP after each feed event by least squares (using Solver), summing (for each animal) the contributions from each feed event by best-fitting a one-compartment model. Time since the preceding meal was of limited value in estimating DMP. Even when the meal sizes and time intervals between a spot measurement and all feeding events in the previous 72 h were assessed, only 16.9% of the variance in spot emission rate measured by GEM was explained by this feeding information. While using the preceding meal alone gave a biased (underestimate) of DMP, allowing for a longer feed history removed this bias. A power analysis taking into account the sources of variation in DMP indicated that to obtain an estimate of DMP with a 95% confidence interval within 5% of the observed 64 days mean of spot measures would require 40 animals measured over 45 days (two spot measurements per day) or 30 animals measured over 55 days. These numbers suggest that spot measurements could be made in association with feed efficiency tests made over 70 days. Spot measurements of enteric emissions can be used to define DMP but the number of animals and samples are larger than are needed when day-long measures are made.

Epidemiology and Treatment Options of Primary Biliary Cirrhosis

Primary biliary cirrhosis (PBC) is caused by an autoimmune inflammation of the small bile ducts. It results to destruction of bile ducts, accumulation of the bile in the liver, and cirrhosis. The prevalence and incidence of PBC is increasing in the Western world. The prevalence is highest in the USA (402 per million) and incidence in Scotland (49/million/year). Our aim was to assess the epidemiology of PBC in Finland. Patients for the epidemiological study were searched from the hospital discharge records from year 1988 to 1999.The prevalence rose from 103 to 180/million from 1988 to 1999, an annual increase of 5.1%. The incidence rose from 12 to 17 /million/year, an annual increase of 3.5%. The age at death increased markedly from 65 to 76 years. The risk of liver related deaths diminished over time. The treatment of PBC is based on Ursodeoxycholic acid (UDCA). During 20 years 50% of patients end up with cirrhosis. Our treatment option was to combine budesonide, a potent corticosteroid with a high first pass metabolism in the liver, to UDCA and evaluate the liver effects and systemic effects such as bone mass density (BMD) changes. Our aim was to find out if combination of laboratory tests would serve as a surrogate marker for PBC and help reducing the need for liver biopsy. Non-cirrhotic PBC patients were randomized to receive budesonide 6 mg/day combined to UDCA 15 mg /kg/day or UDCA alone for three years. The combination therapy with UDCA and budesonide was effective: stage improved 22%, fibrosis 25%, and inflammation 32%. In the UDCA group the changes were: 20% deterioriation in stage and 70% in fibrosis, but a 10% improvement in inflammation. BMD in femoral neck decreased by 3.6% in the combination group and by 1.9% in the UDCA group. The reductions in lumbar spine were 2.8% and 0.7%. Pharmacokinetics did not differ between the stages of PBC. HA, PIIINP, bile acids, and AST were significantly different within stages I-III and could differentiate the mild fibrosis (F0F1) from the moderate (F2F3). The combination of these individual markers (PBC-score) further improved the accuracy. The area under the ROC of the PBC score, using a cut of value 66, had a sensitivity of 81.4% and a specificity of 65.2% to classify the stage of PBC. The prevalence of PBC in Finland increases, which results from increasing incidence and improved survival. The combination of budesonide and UDCA improves liver histology compared to UDCA alone in non-cirrhotic stages of PBC. The treatment may reduce BMD. Hyaluronic acid, PIIINP, AST, and bile acids may serve as tools to monitor the treatment response in the early stages of PBC. The budesonide and UDCA combination therapy is an option for those patients who do not receive full response from UDCA and are still at the non-cirrhotic stage of PBC.

A Strategy for Conserving the Biodiversity of the Uttara Kannada District in South India

Taking the various values ascribed to biodiversity as its point of departure rather many years ago, the present study aims at deriving a conservation strategy for Uttara Kannada. This hilly district, with the highest proportion of its area under forests in South India, is divided into five ecological zones: coastal, northern evergreen, southern evergreen, moist deciduous, and dry deciduous. The heavily-populated coastal zone includes mangrove forests and estuarine wetlands. The evergreen forests are particularly rich in the diversity of plant species which they support - including wild relatives of a number of cultivated plants. They also serve a vital function in watershed conservation. The moist deciduous forests are rich in bird species; both moist and dry deciduous forests include a number of freshwater ponds and lakes that support a high diversity of aquatic birds.Reviewing the overall distribution of biodiversity, we identify specific localities - including estuaries, evergreen forests, and moist deciduous forests - which should be set aside as Nature reserves. These larger reserves must be complemented by a network of traditionally-protected sacred groves and sacred trees that are distributed throughout the district and that protect today, for instance, the finest surviving stand of dipterocarp trees.We also spell out the necessary policy-changes in overall development strategy that should stem the ongoing decimation of biodiversity. These include (1) revitalizing community-based systems of sustainable management of village forests and protection of sacred groves and trees; (2) reorienting the usage-pattern of reserve forests from production of a limited variety of timber and softwood species for industrial consumers, to production of a larger diversity of non-wood forest produce of commercial value to support the rural economy; (3) utilizing marginal lands under private ownership for generating industrial wood supplies; and (4) provision of incentives for in situ maintenance of land-races of cultivated plants - especially evergreen, fruit-yielding trees - by the local people.It is proposed that this broad framework be now taken to the local communities, and that an action-plan be developed on the basis of inputs provided - and initiatives taken - by them.

Potential and economics of forestry options for carbon sequestration in India

There is a need to understand the carbon (C) sequestration potential of the forestry option and its financial implications for each country.In India the C emissions from deforestation are estimated to be nearly offset by C sequestration in forests under succession and tree plantations. India has nearly succeeded in stabilizing the area under forests and has adequate forest conservation strategies. Biomass demands for softwood, hardwood and firewood are estimated to double or treble by the year 2020. A set of forestry options were developed to meet the projected biomass needs, and keeping in mind the features of land categories available, three scenarios were developed: potential; demand-driven; and programme-driven scenarios. Adoption of the demand-driven scenario, targeted at meeting the projected biomass needs, is estimated to sequester 78 Mt of C annually after accounting for all emissions resulting from clearfelling and end use of biomass. The demand-driven scenario is estimated to offset 50% of national C emission at 1990 level. The cost per t of C sequestered for forestry options is lower than the energy options considered. The annual investment required for implementing the demand-driven scenario is estimated to be US$ 2.1 billion for six years and is shown to be feasible. Among forestry options, the ranking based on investment cost per t of C sequestered from least cost to highest cost is; natural regeneration-agro-forestry-enhanced natural regeneration (< US$ 2.5/t C)-timber-community-softwood forestry (US$ 3.3 to 7.3 per t of C).

Comparative Assessment of Techniques for Bioresource Monitoring Using GIS and Remote Sensing

Growing concern over the status of global and regional bioenergy resources has necessitated the analysis and monitoring of land cover and land use parameters on spatial and temporal scales. The knowledge of land cover and land use is very important in understanding natural resources utilization, conversion and management. Land cover, land use intensity and land use diversity are land quality indicators for sustainable land management. Optimal management of resources aids in maintaining the ecosystem balance and thereby ensures the sustainable development of a region. Thus sustainable development of a region requires a synoptic ecosystem approach in the management of natural resources that relates to the dynamics of natural variability and the effects of human intervention on key indicators of biodiversity and productivity. Spatial and temporal tools such as remote sensing (RS), geographic information system (GIS) and global positioning system (GPS) provide spatial and attribute data at regular intervals with functionalities of a decision support system aid in visualisation, querying, analysis, etc., which would aid in sustainable management of natural resources. Remote sensing data and GIS technologies play an important role in spatially evaluating bioresource availability and demand. This paper explores various land cover and land use techniques that could be used for bioresources monitoring considering the spatial data of Kolar district, Karnataka state, India. Slope and distance based vegetation indices are computed for qualitative and quantitative assessment of land cover using remote spectral measurements. Differentscale mapping of land use pattern in Kolar district is done using supervised classification approaches. Slope based vegetation indices show area under vegetation range from 47.65 % to 49.05% while distance based vegetation indices shoes its range from 40.40% to 47.41%. Land use analyses using maximum likelihood classifier indicate that 46.69% is agricultural land, 42.33% is wasteland (barren land), 4.62% is built up, 3.07% of plantation, 2.77% natural forest and 0.53% water bodies. The comparative analysis of various classifiers, indicate that the Gaussian maximum likelihood classifier has least errors. The computation of talukwise bioresource status shows that Chikballapur Taluk has better availability of resources compared to other taluks in the district.

Biofuel production and implications for land use, food production and environment in India

There is a large interest in biofuels in India as a substitute to petroleum-based fuels, with a purpose of enhancing energy security and promoting rural development. India has announced an ambitious target of substituting 20% of fossil fuel consumption by biodiesel and bioethanol by 2017. India has announced a national biofuel policy and launched a large program to promote biofuel production, particularly on wastelands: its implications need to be studied intensively considering the fact that India is a large developing country with high population density and large rural population depending upon land for their livelihood. Another factor is that Indian economy is experiencing high growth rate, which may lead to enhanced demand for food, livestock products, timber, paper, etc., with implications for land use. Studies have shown that area under agriculture and forest has nearly stabilized over the past 2-3 decades. This paper presents an assessment of the implications of projected large-scale biofuel production on land available for food production, water, biodiversity, rural development and GHG emissions. The assessment will be largely focused on first generation biofuel crops, since the Indian program is currently dominated by these crops. Technological and policy options required for promoting sustainable biofuel production will be discussed. (C) 2010 Elsevier Ltd. All rights reserved.

Deforestation and forest degradation in India - implications for REDD+

Reducing emissions from deforestation and forest degradation (REDD+) is considered as an important mechanism under the UNFCCC aimed at mitigating climate change. The Cancun Agreement on REDD mechanism has paved the way for designing and implementation of REDD+ activities, to assist countries experiencing large-scale deforestation and forest degradation. Contrary to the general perception, the present analysis shows that India is currently experiencing deforestation and forest degradation. According to the latest assessment of the Forest Survey of India, the net annual loss of forests is estimated to be 99,850 ha during the period 2007-2009, even though the total area under forests has increased. The REDD+ mechanism aims to provide financial incentives for reducing deforestation and forest degradation. India, despite having robust legislations, policies and remote sensing capabilities, is not ready to benefit from the emerging REDD+ mechanism, with potential flow of large financial benefits to rural and forest-dependent communities from international financial sources.

Potential for increasing carbon sink in Himachal Pradesh, India

In this study, the potential for increasing the tree cover and thereby the biomass and carbon as a mitigation option of three categories of wastelands, irrespective of their tenure, are considered. The area under wastelands in Himachal Pradesh, according to NRSA (2005), is estimated to be 2.83 Mha. Among the 28 categories of wastelands reported by NRSA, only 15 categories exist in Himachal Pradesh. In the present study, three land categories are considered for estimating the mitigation potential. They include: (i) Degraded forestland, (ii) Degraded community land and (iii) Degraded and abandoned private land. Choice of species or the mix of species to be planted on the three land categories considered for reforestation is discussed. Carbon pools considered in the present study are those, which account only for aboveground biomass, belowground biomass and soil organic carbon. This study estimates the mitigation potential at the state level considering land available under more than one category. It also provides a roadmap for future work in support of mitigation analysis and implementation.

Report of the Inter-American Tropical Tuna Commission for the year 1967

ENGLISH: The Inter-American Tropical Tuna Commission was created and operates under the authority of a Convention first negotiated between the governments of the Republic of Costa Rica and the United States of America. The Convention entered into force in 1950. It is open to adherence by other governments whose nationals fish for tunas in the eastern Pacific area. Under this provision, Panama adhered in 1953, Ecuador in 1961, the United Mexican States in 1964. Canada applied for membership in 1967. Her membership will become effective on April 1, 1968. On August 21, 1967 the Ecuadorian government, for financial reasons, elected to withdraw from active membership. Under Convention ruling, this means that she remains a full member until August 21, 1968. SPANISH: La Comisión Interamericana del Atún Tropical fue originada y está bajo la autoridad de una Convención que fue negociada inicialmente entre los gobiernos de la República de Costa Rica y los Estados Unidos de América. La Convención entró en vigencia en 1950. Está abierta a la afiliación de otros gobiernos cuyos ciudadanos pescan atunes en el área del Pacífico oriental. Bajo esta estipulación, Panamá se afilió en 1953, Ecuador en 1961 y los Estados Unidos Mexicanos en 1964. Canadá presentó su ap1licación en 1967. Su afiliación será efectiva el 1 de abril de 1968. El 21 de agosto de 1967, el gobierno ecuatoriano por razones financieras decidió retirar su participación activa. Bajo las reglas de la Convención el Ecuador sigue actuando como miembro hasta el 21 de agosto de 1968. (PDF contains 144 pages.)

Jungfischsituation in der Nordsee wenig ermutigend

In order to investigate the abundanceand strength of most recent year classes of cod,haddock, whiting, Norway pout, herring, sprat, and mackerel seven researchvessels of ICES member states carried out a bottom trawl survey in the North Sea in January/February 1996. Germany took part in these investigations by R.V. "Walther Herwig III" from January 19 to February 9 covering 62 out of 332 international stations. No substantial positive or negative results concerning the incoming year classes were obtained. As expected, the hydrographc situation of the area under investigation was strongly influenced by the actual weather: On the one hand, the continuous cooling of the surface layer by cold air caused vertical mixing down into the bottom layer in larger areas, and led to decreasing water temperatures which were below the long term values in nearly all the North Sea at the end of the investigation period. On the other hand, the continuous southern to eastern winds over the North Sea led to horizontal water mass transports renewing vertical salinity differences and inducing regionally positive as weH as negative salinity anomalies of up to 0.6· 10-3. ,

Reavaliação deposicional da Bacia de São José de Itaboraí com base em dados geológicos e geofísicos

A Bacia de São José de Itaboraí está localizada no Município de Itaboraí, no Estado do Rio de Janeiro. Ela foi descoberta em 1928, pelo Engenheiro Carlos Euler, que após analisar um suposto caulim encontrado na Fazenda São José pelo seu então proprietário, Sr. Ernesto Coube, verificou que se tratava de calcário. Os Professores Rui Lima e Silva e Othon H. Leonardos, enviados ao local para estudos, encontraram uma grande quantidade de fósseis de gastrópodes continentais, despertando o interesse científico pela região. Os estudos preliminares de campo e análises químicas evidenciaram boas perspectivas de exploração do calcário para a fabricação de cimento do tipo Portland. Por mais de 50 anos, a Companhia Nacional de Cimento Portland Mauá (CNCPM) explorou a pedreira. Desde sua descoberta, a Bacia de São José, paralelamente às atividades de mineração, foi objeto de pesquisas científicas realizadas por geólogos, paleontólogos e arqueólogos. No início da década de 80, a Cia. de Cimento Mauá decidiu abandonar a área em função do esgotamento econômico da reserva de minério. Com a retirada das bombas que impediam a inundação da pedreira, formou-se uma lagoa que passou a impedir o livre acesso aos afloramentos. Desde então as pesquisas sobre a Bacia ficaram concentradas aos materiais coletados no período de exploração de calcário. Material esse distribuído no Museu Nacional (MN), Departamento Nacional da Produção Mineral (DNPM), Instituto de Geociências da UFRJ, entre outros. Em 1990, a área que pertencia a CNCPM foi desapropriada por pressão da comunidade científica. A mesma passou a pertencer ao Município de Itaboraí, que criou o Parque Paleontológico de São José de Itaboraí, por meio da Lei 1.346, de 12 de dezembro de 1995. O objetivo desse trabalho foi gerar novos dados através do método geofísico conhecido como magnetometria. Para isso foram realizados levantamentos de campo utilizando um magnetômetro portátil e GPS, foram analisados e corrigidos dados utilizando softwares específicos, elaborados modelos e criados perfis a partir de descrições de testemunhos de sondagem. Os resultados obtidos visam possibilitar uma nova interpretação da geologia e da estratigrafia da bacia, dando condições para que se possa ter uma atualização dos conhecimentos relacionados à região, após quase meio século de atividade mineradora.

Copépodos calanoideos marinos del área de Mar del Plata con la descripción de Pontella marplatensis n.sp

This paper deals with the Calanoidean Copepod of the Mar del Plata area (Province of Buenos Aires, Argentina) which were obtained in 71 starions during 5 oceanographic cruises performed on April, August-September and December, 1963 and on March and May, 1964. The area under study ranges from 37°20' to 38°45' L.S. and from 56°30' to 58°10' L.W. The samples were gathered from coastal, surface waters. Quantitative data could not be obtaine, except for and estimation of the time of flow through the plakton net. A total of 13 species of Calanoid Copepods were found. The species found were described, and drawings were made of those structures wich ere considered of taxonomic value. Data were included on the geographic distribution, with emphasis on South Atlantic and areas Antarctic.

Emissão de CO2 do solo e sua correlação com a rizosfera de diferentes paisagens de áreas mineradas do município de Santo Antônio de Pádua-RJ

Objetivando avaliar o comportamento das emissões de CO2 do solo em áreas mineradas do município de Santo Antônio de Pádua-RJ e sua correlação com a rizosfera, este presente estudo utilizou uma câmara fechada com sensor de infravermelho em três diferentes paisagens, a saber: A-1 (área reflorestada há 10 anos), A-2 (área desmatada) e A-3 (área em processo de recuperação). Em cada área foi instalada três cilindros para efeitos de repetição. O monitoramento foi realizado durante os meses representativos de cada estação do ano de 2013, sendo a análise realizada durante dois dias consecutivos. Concomitantemente as coletas de CO2 foram realizadas coletas de dados de temperatura e umidade do solo, sendo também avaliadas informações pedológicas através das análises de granulometria, porosidade, pH, carbono orgânico e matéria orgânica. Informações meteorológicas e microclimatológicas também foram extraídas através de uma estação meteorológica automática e através de sensores portáteis. Os resultados permitem concluir que existe uma variação sazonal dos fluxos de CO2, havendo uma tendência de máximos de emissão durante o verão e de mínimas durante o inverno, sendo o outono e a primavera marcados por valores medianos. A correlação das áreas entre os dois dias monitoramento indicam que as emissões foram semelhantes ao da análise em dia anterior, apresentando uma correlação significativa a 5% para A-1 e A-2 e de 1% para A-3. A-1 e A-2 apresentaram emissões de CO2 mais homogêneas que A-3, havendo, entretanto, um maior fluxo de CO2 durante o verão para todas as áreas. Os dados de MOS, COS e pH demonstraram não haver uma correlação direta com as emissões de CO2. Os dados de porosidade e densidade, porém, apontam para uma possível correlação com as menores emissões de CO2 em A-3 devido a menor porosidade e maior densidade de seus solos. A temperatura do solo foi a variável que mais se correlacionou com as emissões de CO2, havendo um índice igual a r =0,68 para A-1 e de r =0,74 para A-2, sendo que em A-3 esta correlação não foi significativa. A temperatura do ar demonstrou uma correlação somente na área descampada de A-2. No que se refere à correlação da umidade do solo não houve correlações diretas significativas, sendo que somente houve uma correlação negativa (r=-0,50) significativa a 5% em A-3 com a umidade do ar. O diagnóstico ambiental das áreas de monitoramento revela que estas possuem baixos indicadores de qualidade, sendo afetados também pela escassez hídrica da região durante oito meses do ano. A-1 apresenta os melhores indicadores biológicos, químicos e microclimáticos, seguidos por A-2 e A-3 que apresentam diversas deficiências e problemas em termos de estrutura e atividade biológica dos solos. Neste estudo permite-se concluir que áreas próximas, porém com características distintas podem produzir diferentes padrões de emissão de CO2, dificultando, portanto, estimativas globais de emissão de CO2. Os elementos mais associados às emissões de CO2 parecem estar relacionados à temperatura do solo e do ar, umidade do ar e estrutura do solo, havendo, entretanto, outros fatores que podem estar indiretamente relacionados e que exercem diferentes influências de acordo com o ambiente analisado.