Disseny i implementació de la base de dades d'un sistema de descàrrega d'aplicacions per a mòbils intel·ligents

En aquest projecte es recullen totes les fases necessàries per dissenyar i implementar una base de dades relacional que asseguri la persistència de les dades relatives a les entitats implicades.

Probabilistic base calling of Solexa sequencing data.

BACKGROUND: Solexa/Illumina short-read ultra-high throughput DNA sequencing technology produces millions of short tags (up to 36 bases) by parallel sequencing-by-synthesis of DNA colonies. The processing and statistical analysis of such high-throughput data poses new challenges; currently a fair proportion of the tags are routinely discarded due to an inability to match them to a reference sequence, thereby reducing the effective throughput of the technology. RESULTS: We propose a novel base calling algorithm using model-based clustering and probability theory to identify ambiguous bases and code them with IUPAC symbols. We also select optimal sub-tags using a score based on information content to remove uncertain bases towards the ends of the reads. CONCLUSION: We show that the method improves genome coverage and number of usable tags as compared with Solexa's data processing pipeline by an average of 15%. An R package is provided which allows fast and accurate base calling of Solexa's fluorescence intensity files and the production of informative diagnostic plots.

Disseny i implementació de la base de dades d'un sistema de descàrrega d'aplicacions per a mòbils intel·ligents

En aquest projecte final de carrera es realitzarà un projecte simulat d'una situació en què una organització contracta els serveis d'una empresa per desenvolupar una base de dades per gestionar aplicacions mòbils. El que es pretén amb el projecte és simular totes les etapes d'un projecte real des de la presa de requeriments fins a la implementació.

Scanner du rachis cervical : comparaison de protocoles dose-standard/rétroprojection filtrée et basse-dose/reconstruction intéractive.

Objectifs: Comparer la qualité d'image entre des protocoles dose-standard avec rétroprojection filtrée et basse-dose avec reconstruction itérative en scanner du rachis cervical. Matériels et méthodes: 40 patients ont été investigués par scanner du rachis cervical et prospectivement randomisés en 2 groupes: dose-standard (120kV, 275mAs) avec rétroprojection filtrée, basse-dose (120kV, 150mAs) avec reconstruction itérative. Mesure du bruit, signal-sur-bruit et contraste-sur-bruit. Analyse semi-quantitative (4 points) par 2 observateurs indépendants des disques, foramens, cordon médullaire, ligaments, parties molles et vertèbres, en C3-C4 et C6-C7. Evaluation semi-quantitative (10 points) de la qualité d'image globale. Les paramètres de dose ont été mesurés. Résultats: Il n'y avait aucune différence significative de bruit, signal-sur-bruit ou contraste-sur-bruit entre les 2 protocoles (p≥0.39). En basse-dose avec reconstruction itérative, la visibilité était significativement meilleure pour les disques, foramens et ligaments (p≤0.05), égale pour le cordon médullaire et moins bonne pour les parties molles et vertèbres (p≤0.02). La qualité d'image globale était meilleure, avec une réduction de dose de 41%. Conclusion: Le scanner du rachis cervical basse-dose avec reconstruction itérative fournit des images égales ou meilleures pour les disques, foramens et ligaments, tout en réduisant la dose d'environ 40%.

Disseny i implementació de la base de dades d'un sistema de descàrrega d'aplicacions per a mòbils intel·ligents

Desenvolupament d'una base de dades per a aplicacions de mòbils intel·ligents.

Validação da nomenclatura diagnóstica de enfermagem direcionada ao pré-natal: base CIPESC® em Curitiba - PR

É de fundamental importância uma linguagem específica da profissão e a CIPESC® -Classificação Internacional para as Práticas de Enfermagem em Saúde Coletiva tem como um dos objetivos desvelar a atuação dos enfermeiros na saúde coletiva. No Brasil, a ABEn, responsável pela classificação, encontrou na Secretaria Municipal da Saúde de Curitiba - PR aliada para efetiva implantação. O objetivo deste artigo foi validar a nomenclatura dos 52 diagnósticos de enfermagem do pré-natal - base CIPESC® - Curitiba. É um estudo exploratório-descritivo, desenvolvido com enfermeiras assistenciais e com experts na área de gineco-obstetrícia e terminologia. Os resultados foram apresentados pelo Índice de Concordância por meio de freqüência absoluta, todas as definições foram validadas, porém necessitam de adequações à linguagem cotidiana. As enfermeiras apresentam dificuldades para inter-pretar intervenção de enfermagem na promoção do bem-estar, sendo premente a discussão do conceito de promoção à saúde e o processo saúde-doença na saúde coletiva.

Charge transfer in DNA: hole charge is confined to a single base pair due to solvation effects

We include solvation effects in tight-binding Hamiltonians for hole states in DNA. The corresponding linear-response parameters are derived from accurate estimates of solvation energy calculated for several hole charge distributions in DNA stacks. Two models are considered: (A) the correction to a diagonal Hamiltonian matrix element depends only on the charge localized on the corresponding site and (B) in addition to this term, the reaction field due to adjacent base pairs is accounted for. We show that both schemes give very similar results. The effects of the polar medium on the hole distribution in DNA are studied. We conclude that the effects of polar surroundings essentially suppress charge delocalization in DNA, and hole states in (GC)n sequences are localized on individual guanines

Iterative image reconstruction techniques: cardiothoracic computed tomography applications.

Iterative image reconstruction algorithms provide significant improvements over traditional filtered back projection in computed tomography (CT). Clinically available through recent advances in modern CT technology, iterative reconstruction enhances image quality through cyclical image calculation, suppressing image noise and artifacts, particularly blooming artifacts. The advantages of iterative reconstruction are apparent in traditionally challenging cases-for example, in obese patients, those with significant artery calcification, or those with coronary artery stents. In addition, as clinical use of CT has grown, so have concerns over ionizing radiation associated with CT examinations. Through noise reduction, iterative reconstruction has been shown to permit radiation dose reduction while preserving diagnostic image quality. This approach is becoming increasingly attractive as the routine use of CT for pediatric and repeated follow-up evaluation grows ever more common. Cardiovascular CT in particular, with its focus on detailed structural and functional analyses, stands to benefit greatly from the promising iterative solutions that are readily available.

The Building Blocks of International Ecological Footprint inequality: A Regression-Base Decomposition

This paper performs an empirical Decomposition of International Inequality in Ecological Footprint in order to quantify to what extent explanatory variables such as a country’s affluence, economic structure, demographic characteristics, climate and technology contributed to international differences in terms of natural resource consumption during the period 1993-2007. We use a Regression- Based Inequality Decomposition approach. As a result, the methodology extends qualitatively the results obtained in standard environmental impact regressions as it comprehends further social dimensions of the Sustainable Development concept, i.e. equity within generations. The results obtained point to prioritizing policies that take into account both future and present generations. Keywords: Ecological Footprint Inequality, Regression-Based Inequality Decomposition, Intragenerational equity, Sustainable development.

Personalització i desenvolupament sobre Liferay : Prototipus base d'aplicació web

Aquest treball es centra en l'estudi del programari del portal Liferay i en la creació d'un prototipus sobre aquest programari 100% Java. A partir d'un llistat d'objectius, el treball ha aprofundit en diferents tecnologies, generant diversos mòduls.

Diseño e implementación de una base de datos relacional para la gestión sanitaria

El ejercicio que se nos plantea es desarrollar una base de datos para la gestión integral del sistema sanitario. Además, también tendremos que crear un almacén de datos para facilitar el análisis de la situación del sistema.

Bioinformática: base de datos de matrices de expresión génica para su análisis vía web

El IBB ha desarrollado un servidor de aplicaciones: http://revolutionresearch.uab.es para el análisis de microarrays. Estas microarrays las obtienen y las suben a la base de datos local los usuarios de la aplicación. En la presente memoria se detalla el proceso realizado para automatizar la subida de microarrays públicas a la base de datos local. Estas microarrays se obtendrán del NCBI. El proceso de descarga de microarrays se realizará cada dos meses y estará sincronizado con un proceso de descarga de genes marcadores de microarrays del NCBI. En la memoria también se describen las fases realizadas para crear la interfaz web para gestionar estas microarrays públicas y las modificaciones realizadas sobre el aplicativo web para permitir realizar análisis con estas microarrays.