Reduction of specific energy consumption of a thermomechanical pulping plant

Kuumahiertoprosessi on erittäin energiaintensiivinen prosessi, jonka energianominaiskulutus (EOK) on yleisesti 2–3.5 MWh/bdt. Noin 93 % energiasta kuluu jauhatuksessa jakautuen niin, että kaksi kolmasosaa kuluu päälinjan ja yksi kolmasosa rejektijauhatuksessa. Siksi myös tämän työn tavoite asetettiin vähentämään energian kulutusta juuri pää- ja rejektijauhatuksessa. Päälinjan jauhatuksessa tutkimuskohteiksi valittiin terityksen, tehojaon ja tuotantotason vaikutus EOK:een. Rejektijauhatuksen tehostamiseen pyrittiin yrittämällä vähentää rejektivirtaamaa painelajittelun keinoin. Koska TMP3 laitoksen jauhatuskapasiteettia on nostettu 25 %, tavoite oli nostaa päälinjan lajittelun kapasiteettia saman verran. Toisena tavoitteena oli pienentää rejektisuhdetta pää- ja rejektilajittelussa ja siten vähentää energiankulutusta rejektijauhatuksessa. Näitä tavoitteita lähestyttiin vaihtamalla päälinjan lajittimiin TamScreen-roottorit ja rejektilajittimiin Metso ProFoil-roottorit ja optimoimalla kuitufraktiot sihtirumpu- ja prosessiparametrimuutoksin. Syöttävällä terätyypillä pystyttiin vähentämään EOK:ta 100 kWh/bdt, mutta korkeampi jauhatusintensiteetti johti myös alempiin lujuusominaisuuksiin, korkeampaan ilmanläpäisyyn ja korkeampaan opasiteettiin. Myös tehojaolla voitiin vaikuttaa EOK:een. Kun ensimmäisen vaiheen jauhinta kuormitettiin enemmän, saavutettiin korkeimmillaan 70 kWh/bdt EOK-vähennys. Tuotantotason mittaamisongelmat heikensivät tuotantotasokoeajojen tuloksia siinä määrin, että näiden tulosten perusteella ei voida päätellä, onko EOK tuotantotasoriippuvainen vai ei. Päälinjan lajittelun kapasiteettia pystyttiin nostamaan TS-roottorilla vain 18 % jääden hieman tavoitetasosta. Rejektilajittelussa pystyttiin vähentämään rejektimäärää huomattavasti Metso ProFoil-roottorilla sekä sihtirumpu- ja prosessiparametrimuutoksin. Lajittamokehityksellä saavutettu EOK-vähennys arvioitiin massarejektisuhteen pienentymisen ja rejektijauhatuksessa käytetyn EOK:n avulla olevan noin 130 kWh/bdt. Yhteenvetona voidaan todeta, että tavoite 300 kWh/bdt EOK-vähennyksestä voidaan saavuttaa työssä käytetyillä tavoilla, mikäli niiden täysi potentiaali hyödynnetään tuotannossa.

Quali/quantitative characterization of biogas produced in batch digesters supplied with six distinct substrates

The present research was carried out at the DER/FCAV, São Paulo State University - Brazil, with the purpose of analyzing the quantity and quality of biogas produced by six types of substrates. The substrates used in the anaerobic digestion were characterized as: 1- Litter of broiler (LB); 2- Grinded broiler litter (GBL); 3- Broiler litter with wood shavings (BLWS); 4- Grinded broiler litter with wood shavings (GBLWS); 5- Broiler litter with peanut hulls (BLPH); 6- Grinded broiler litter with peanut hull (GBLPH). It was concluded from the collected data that: the (GBL) substrate showed a superior biogas accumulated production in relation to the other substrates, while the BLWS presented an inferior accumulated production; the grinded substrates showed higher quantities of accumulated biogas in relation to the non-grinded substrates, except for GBLPH, with 20.9 m³ inferior than BLPH; the period of maximum biogas production started from 45 to 60 days, declining after 120 days; at 57 days after filling up the digesters the biogas produced had levels of CH4 superior than 53%, and from 99 days all of them produced biogas with levels of CH4 superior than 70%; LB and GBL presented higher concentrations of CH4 in the biogas.

Estimation of transpiration of the 'Valencia' orange young plant using thermal dissipation probe method

Most studies on measures of transpiration of plants, especially woody fruit, relies on methods of heat supply in the trunk. This study aimed to calibrate the Thermal Dissipation Probe Method (TDP) to estimate the transpiration, study the effects of natural thermal gradients and determine the relation between outside diameter and area of xylem in 'Valencia' orange young plants. TDP were installed in 40 orange plants of 15 months old, planted in boxes of 500 L, in a greenhouse. It was tested the correction of the natural thermal differences (DTN) for the estimation based on two unheated probes. The area of the conductive section was related to the outside diameter of the stem by means of polynomial regression. The equation for estimation of sap flow was calibrated having as standard lysimeter measures of a representative plant. The angular coefficient of the equation for estimating sap flow was adjusted by minimizing the absolute deviation between the sap flow and daily transpiration measured by lysimeter. Based on these results, it was concluded that the method of TDP, adjusting the original calibration and correction of the DTN, was effective in transpiration assessment.

Potentials of biogas production from young bulls manure fed with different diets

Physical and chemical characteristics of manure are modified by different animal production systems. In cattle feeding system for young bulls there is an inversion of the proportion between forage and concentrate. In other words, the animals receive a smaller amount of forage compared to the traditional system. These changes in the manure characteristics involve changes in the treatment systems. The aim of this study was to determine the potential production of biogas of batch digesters fed with manure from young bulls that received two diets containing different proportions between forage and concentrate, with or without inoculums and submitted to three levels of temperature (25, 35 and 40(0)C). The evaluated parameters were total solids (TS) and volatile solids (VS) reduction and biogas potentials production. The digesters fed with manure from animals that received the diet 2 (80%C + 20% R) showed the largest reductions of TS and VS. About the potentials of biogas production there was interaction between the factors diet and inoculums, but no effects of temperatures. The treatment content manure from animals fed with diet 2 without inoculums presented the greatest potential of biogas production per kg of TS added (0.2123 m³).

Potential of biogas production from swine manure supplemented with glycerine waste

In this study, was studied the biogas generation from swine manure, using residual glycerine supplementation. The biogas production by digestion occurred in the anaerobic batch system under mesophilic conditions (35°C), with a hydraulic retention time of 48 days. The experiment was performed with 48 samples divided into four groups, from these, one was kept as a control (without glycerin) and the other three groups were respectively supplemented with residual glycerine in the percentage of 3%, 6% and 9% of the total volume of the samples. The volume of biogas was controlled by an automated system for reading in laboratory scale and the quality of the biogas (CH4) measured from a specific sensor. The results showed that the residual glycerine has high potential for biogas production, with increases of 124.95%, 156.98% and 197.83% in the groups 3%, 6% and 9%, respectively, relative to the sample control. However, very high organic loads can compromise the process of digestion affecting the quality of the biogas generated in relation to methane.

Spraying systems and traveling speed in the deposit and spectrum of droplets in cotton plant

ABSTRACT Tractor traveling speed can influence the quality of spraying depending on the application technology used. This study aimed to evaluate the droplet spectrum, the deposition and uniformity of spray distribution with different spraying systems and traveling speeds of a self-propelled sprayer in two phenological stages of the cotton plant (B9 and F13). The experimental design was randomized blocks and treatments were three spraying techniques: common flat spray tips; tilted flat jet with air induction, at 120 L ha-1; and rotary atomizer disk, 20 L ha-1, combined with four traveling speeds: 12, 15, 18 and 25 km h-1, with four replications. Spraying deposition was evaluated for both leaf surfaces from the cotton plant apex and base (stage B9) and middle part of the plant (stage F13) with a cupric marker. A laser particle analyzer also assessed the droplet spectrum. The centrifugal power spray system produces more homogeneous droplet spectrum and increased penetration of droplets into the canopy in both phenological stages. Variation on the operating conditions necessary for increased traveling speed negatively influences the pattern of spraying deposits.

Optimization of hydrogen plant efficiency

The purpose of this master’s thesis was to study ways to increase the operating cost-efficiency of the hydrogen production process by optimizing the process parameters while, at the same time, maintaining plant reliability and safety. The literature part reviewed other hydrogen production and purification processes as well as raw material alternatives for hydrogen production. The experimental part of the master’s thesis was conducted at Solvay Chemicals Finland Oy’s hydrogen plant in spring 2012. It was performed by changing the process parameters, first, one by one, aiming for a more efficient process with clean product gas and lower natural gas consumption. The values of the process parameters were tested based on the information from the literature, process simulation and experiences of previous similar processes. The studied parameters were reformer outlet temperature, shift converter inlet temperature and steam/carbon ratio. The results show that the optimal process conditions are a lower steam/carbon ratio and reformer outlet temperature than the current values of 3.0 and 798 °C. An increase/decrease in the shift conversion inlet temperature does not affect natural gas consumption, but it has an effect on minimizing the process steam overload.

Liikennebiokaasun tuotannon ja käytön ulkoiset kustannukset Pohjois-Karjalassa

Työn tavoitteena oli selvittää liikennebiokaasuntuotannon ja käytön vaikutus liikenteen ulkoi-siin kustannuksiin Pohjois-Karjalassa. Biokaasua tuotetaan Joensuussa Kuhasalon jäteveden-puhdistamolla sekä Kontiosuon jäteasemalla, Kiteellä biokaasua tuotetaan BioKympin yh-teismädätyslaitoksessa. Lisäksi laskennassa huomioitiin yhden maatilakokoluokan biokaasun-tuotanto. Työssä selvitettiin kaksi skenaariota liikennebiokaasun tuotantomääräksi vuodelle 2015. Liikennebiokaasua voitaisiin tuottaa optimiskenaarion mukaan 3 426 MWh ja maksimi-tuotantoskenaarion mukaan 21 532 MWh. Liikennebiokaasun käytön vaikutukset liikenteen päästöihin laskettiin vuodelle 2015 ja vuo-delle 2020, jolloin liikennebiokaasua käytettäisiin 10 % liikenteen energiantarpeesta Pohjois-Karjalassa. Hiilidioksidipäästöt vähenevät vuoden 2020 tilanteessa samassa suhteessa kuin liikennebiokaasu korvaa fossiilisia polttoaineita. Muista päästöistä merkittävimmät päästövä-hennykset saatiin kun vuoden 2010 dieselautot muutettaisiin biokaasuautoiksi, tällöin hiuk-kaspäästöt alenisivat jopa 18 % vuoden 2010 päästöistä. Lisäksi selvitettiin liikenteen päästöjen pienenemisen vaikutus liikenteen aiheuttamiin ulkoisiin kustannuksiin. Laskettavat ulkoiset kustannukset olivat ilmastonmuutos, pakokaasupäästöt sekä energiariippuvuus. Pakokaasupäästöjen aiheuttamat ulkoiset kustannukset olivat vuonna 2010 noin 7 miljoonaa euroa. Liikennebiokaasua käyttävästä ajoneuvotyypistä riippuen ulkoiset kustannukset laskevat vuoden 2020 tilanteessa 10–16 % vuoden 2010 kustannuksista. Ilmastonmuutoksen ulkoiset kustannukset vuodelle 2010 olivat 9,5 miljoonaa euroa. Biokaasun käytön avulla kustannuksissa voitaisiin säästää 910 000 euroa vuonna 2020. Ener-giariippuvuuden hinta öljynkäytöstä oli vuonna 2010 noin 4,2 miljoonaa euroa ja vuonna 2020 kustannukset voisivat laskea 450 000 euroa.

Pienen kokoluokan CHP-tuotannon kannattavuus kunnallisen lämpölaitoksen yhteydessä

Fossiiliset polttoainevarannot ovat ehtymässä. Nykyisen talouskasvumme perustuessa fossiilisten polttoaineiden kestämättömään käyttöön, on energiantuotantorakenteen muututtava. Euroopan Unioni on asettanut tavoitteet uusiutuvan energian osuuden lisäämiseksi. Näistä syistä johtuen kiinnostus uusiutuvaa energiaa ja hajautettua energiantuotantoa kohtaan on kasvanut viime aikoina. Tämän globaalin ilmiön rinnalla yhteiskuntarakenteen muutos Suomessa on johtanut tilanteeseen, jossa taloudellinen aktiviteetti kasvukeskusten ulkopuolella on hiipumassa. Loogisena ratkaisumallina on syntynyt hankkeita kuten Keski-Karjalan Kehitysyhtiö Oy:n Puhos 2013 - ympäristöalasta uutta liiketoimintaa - hanke. Tämä työ on Puhos 2013 - hankkeeseen tilattu tutkimus, jonka tavoitteena on puuta ja biokaasua polttoaineenaan käyttävän mikroturbiinitekniikkaan pohjautuvan pienen kokoluokan CHP tuotannon kannattavuuden selvittäminen kunnallisen lämpölaitoksen yhteydessä. Tutkimuksessa selvitettiin aluksi pienen kokoluokan CHP tuotannon kannattavuuteen vaikuttavat tekijät, jonka jälkeen opittua tietoa sovellettiin Kiteen Lämmön Arppentien lämpölaitoksen tapaukseen. Kiteen Lämmön taloudellisen kannattavuuden ohella tutkimuksessa huomioitiin uusien liiketoiminta mahdollisuuksien syntyminen alueelle. Käytetyt tutkimusmenetelmät olivat kvalitatiivinen analyysi ja perinteinen investoinnin kannattavuuslaskenta. Tutkimuksen tuloksena muodostettiin strategia, joka maksimoi molemmat edellä mainitut kannattavuuden näkökulmat. Kehitetyn strategian Kiteen Lämmön tulosta maksimoiva osuus muodostuu oman käyttösähkön tuottamisen aloittamisesta Arppentien lämpölaitoksella 30 kWe mikroturbiinilla käyttäen polttoaineena Bio10 Oy:n toimittamaa biokaasua. Uusien liiketoiminta mahdollisuuksien synty alueelle mahdollistetaan puolestaan kehittämällä puun kaasutukseen perustuva modulaarinen CHP laitos yhteistyössä Mekrijärven tutkimusaseman ja suomalaisten laitevalmistajien kanssa.

Kompostipiireissä opittua : Eloperäiset jätteet kiertoon -hanke

Kompostien käyttöä on kokeiltu ja tutkittu Kainuun ELY-keskuksen Eloperäiset jätteet kiertoon -hankkeessa. Komposteja on hyödynnetty laskettelurinteen ja kaivosteollisuuden sivukiven läjitysalueen maisemoinnissa, pihanurmen ja energiakasvien kasvattamisessa, metsän lannoittamisessa ja maanviljelyssä. Pihanurmen perustamisen ja energiakasvien kasvattamisen kokeiluista on tehty myös erilliset tutkimukset. Tutkimustyöstä on vastannut MTT (Maa- ja elintarviketalouden tutkimuskeskus). Tutkimustieto on sisällytetty tähän julkaisuun. Kompostin käyttökokeissa ja tutkimuksissa on hyödynnetty Kainuun kuntien ja Kainuun jätehuollon kuntayhtymän Eko-Kympin komposteja. Kaikki kompostit ovat aumakompostoinnin tuotoksia. Eko-Kympin komposti on valmistettu biojätteistä. Muut kompostit ovat lähtöisin kunnallisten jätevedenpuhdistamoiden lietteistä. Kajaanin kompostia kutsutaan myös A. & E. Juntunen Oy:n valmistamaksi biomullaksi. Saatujen kokemusten ja tutkimusten mukaan aumakompostoinnilla tuotettu komposti soveltuu näihin erilaisiin käyttömuotoihin, etenkin kun esille tulleita kehittämistoimia toteutetaan. Sivukiven läjitysalueiden maisemoinnissa, maanviljelyssä ja metsän lannoittamisessa komposti ei tarvitse kivennäismaata seosaineeksi. Sivukiven läjitysalueilla ne kompostit, joihin oli sekoitettu hiekkaa, eivät pysyneet paikoillaan. Aines valui sadeveden mukana alas rinteeltä. Pelkkää kompostia käytettäessä kompostimassa pysyi aloillaan. Maanviljelyssä ja metsän lannoittamisessa kivennäismaa on tarpeeton. Lisäksi kompostissa oleva kiviaines kuluttaa ja voi vaurioittaa levityslaitteita. Ravinteet vapautuvat kompostista hitaasti kasvien käyttöön. Kemiallisilla lannoitteilla on nopeampi vaikutus. Kompostit soveltuvat erityisen hyvin ympäristöihin, joissa täydennyslannoitusta ei tarvita tai joissa lannoite on vaikeaa levittää. Tällaisia kohteita ovat esimerkiksi kaivosten sivukiven tai rikastushiekan läjitysalueet tai muut vaikeakulkuiset kohteet. Myös metsien lannoittaminen ja maanviljely ovat Kainuussa kompostien hyödyntämisen osalta alihyödynnettyjä. Pöyry Finland Oy on laatinut Kajaaniin kaavaillulle biologiselle jätteiden käsittelylaitokselle teknistaloudelliset suunnitelmat. Yhtiön tekemissä suunnitelmissa tulee ilmi, että kaikkien Kainuun lietteiden aumakompostointi tuottaisi kompostia 13 000 tonnia vuodessa, kun tukiaine seulotaan erilleen. Mädätys- tai biokaasulaitosvaihtoehdoissa lopputuotteen määrä on edellistä pienempi. Pelkkien Kainuun lietteiden mädättäminen tuottaisi kompostia jälkikompostin seulonnan jälkeen 6 600 tonnia. Viherrakentaminen taajamissa on komposteille Kainuussa yleinen käyttömuoto. Sillä on kasvun edellytyksiä etenkin, kun kompostin laatuun panostetaan. Viherrakentaminen Kajaanin seudulla riittäisi kuluttamaan kaiken Kainuussa muodostuvan kompostin, kun kompostimullan kulutuksena pidetään 0,5 tonnia asukasta kohden vuodessa. Tämä vastaa Kajaanin seudulla 27 000 tonnin kompostimäärää. Kompostin muodostumismäärä ei tulevaisuudessa tule olemaan lähellä tätä laskennallista multamenekkiä. Kompostin huono menekki johtuu joidenkin kuntien osalta pikemminkin huonosta kompostin laadusta kuin markkinoiden kyllästymisestä. Tilanne on korjaantumassa suunnitteilla olevan biologisen jätteiden käsittelylaitoksen myötä. Siinä kompostituotteen laatuun voidaan panostaa tehokkaammin kuin erillisillä pienillä kompostointikentillä.

Towards novel biogas upgrading processes

Biogas production has considerable development possibilities not only in Finland but all over the world since it is the easiest way of creating value out of various waste fractions and represents an alternative source of renewable energy. Development of efficient biogas upgrading technology has become an important issue since it improves the quality of biogas and for example facilitating its injection into the natural gas pipelines. Moreover, such upgrading contributes to resolving the issue of increasing CO2 emissions and addresses the increasing climate change concerns. Together with traditional CO2 capturing technologies a new class of recently emerged sorbents such as ionic liquids is claimed as promising media for gas separations. In this thesis, an extensive comparison of the performance of different solvents in terms of CO2 capture has been performed. The focus of the present study was on aqueous amine solutions and their mixtures, traditional ionic liquids, ‘switchable’ ionic liquids and poly(ionic liquid)s in order to reveal the best option for biogas upgrading. The CO2 capturing efficiency for the most promising solvents achieved values around 50 - 60 L CO2 / L absorbent. These values are superior to currently widely applied water wash biogas upgrading system. Regeneration of the solvent mixtures appeared to be challenging since the loss of initial efficiency upon CO2 release was in excess of 20 - 40 vol %, especially in the case of aqueous amine solutions. In contrast, some of the ionic liquids displayed reversible behavior. Thus, for selected “switchable” ionic and poly(ionic liquid)s the CO2 absorption/regeneration cycles were performed 3 - 4 times without any notable efficiency decrease. The viscosity issue, typical for ionic liquids upon CO2 saturation, was addressed and the information obtained was evaluated and related to the ionic interactions. The occurrence of volatile organic compounds (VOCs) before and after biogas upgrading was studied for biogas produced through anaerobic digestion of waste waters sludge. The ionic liquid [C4mim][OAc] demonstrated its feasibility as a promising scrubbing media and exhibited high efficiency in terms of the removal of VOCs. Upon application of this ionic liquid, the amount of identified VOCs was diminished by around 65 wt %, while the samples treated with the aqueous mixture of 15 wt % N-methyldiethanolamine with addition of 5 wt % piperazine resulted in 32 wt % reduction in the amounts of volatile organic compounds only.

Regulation of photosynthetic electron transfer in plant chloroplasts

This thesis focuses on the molecular mechanisms regulating the photosynthetic electron transfer reactions upon changes in light intensity. To investigate these mechanisms, I used mutants of the model plant Arabidopsis thaliana impaired in various aspects of regulation of the photosynthetic light reactions. These included mutants of photosystem II (PSII) and light harvesting complex II (LHCII) phosphorylation (stn7 and stn8), mutants of energy-dependent non-photochemical quenching (NPQ) (npq1 and npq4) and of regulation of photosynthetic electron transfer (pgr5). All of these processes have been extensively investigated during the past decades, mainly on plants growing under steady-state conditions, and therefore many aspects of acclimation processes may have been neglected. In this study, plants were grown under fluctuating light, i.e. the alternation of low and high intensities of light, in order to maximally challenge the photosynthetic regulatory mechanisms. In pgr5 and stn7 mutants, the growth in fluctuating light condition mainly damaged PSI while PSII was rather unaffected. It is shown that the PGR5 protein regulates the linear electron transfer: it is essential for the induction of transthylakoid ΔpH that, in turn, activates energy-dependent NPQ and downregulates the activity of cytochrome b6f. This regulation was shown to be essential for the photoprotection of PSI under fluctuations in light intensity. The stn7 mutants were able to acclimate under constant growth light conditions by modulating the PSII/PSI ratio, while under fluctuating growth light they failed in implementing this acclimation strategy. LHCII phosphorylation ensures the balance of the excitation energy distribution between PSII and PSI by increasing the probability for excitons to be trapped by PSI. LHCII can be phosphorylated over all of the thylakoid membrane (grana cores as well as stroma lamellae) and when phosphorylated it constitutes a common antenna for PSII and PSI. Moreover, LHCII was shown to work as a functional bridge that allows the energy transfer between PSII units in grana cores and between PSII and PSI centers in grana margins. Consequently, PSI can function as a quencher of excitation energy. Eventually, the LHCII phosphorylation, NPQ and the photosynthetic control of linear electron transfer via cytochrome b6f work in concert to maintain the redox poise of the electron transfer chain. This is a prerequisite for successful plant growth upon changing natural light conditions, both in short- and long-term.

Indoor air quality at a waste incineration plant in Finland

Waste has been incinerated for energy utilization for more than a hundred years, but the harmful emissions emitted from the incineration plants did not begin to cause concern until the 1980s. Many plants were shutdown and the waste incineration plant in Kyläsaari Helsinki was one of them. In later years, new landfill regulations have increased the interest in waste incineration. During the last year, four new plants were taken into operation in Finland, Westenergy in Vaasa among them. The presence of dust has been observed indoors at Westenergy waste incineration plant. Dust is defined as particles with a diameter above 10 μm, while fine particles have a diameter smaller than 2.5 μm, ultrafine under 0.1 μm and nanoparticles under 0.05 μm. In recent years, the focus of particle health research has been changed to investigate smaller particles. Ultrafine particles have been found to be more detrimental to health than larger particles. Limit values regulating the concentrations of ultrafine particles have not been determined yet. The objective of this thesis was to investigate dust and particles present inside the Westenergy waste incineration facility. The task was to investigate the potential pollutant sources and to give recommendations of how to minimize the presence of dust and particles in the power plant. The total particle number concentrations and size distributions where measured at 15 points inside the plant with an Engine Exhaust Particle Sizer (EEPS) Spectrometer. The measured particles were mainly in the ultrafine size range. Dust was only visually investigated, since the main purpose was to follow the dust accumulation. The measurement points inside the incineration plant were chosen according to investigate exposure to visitors and workers. At some points probable leakage of emissions were investigated. The measurements were carried out during approximately one month in March–April 2013. The results of the measurements showed that elevated levels of dust and particles are present in the indoor air at the waste incineration plant. The cleanest air was found in the control room, warehouse and office. The most polluted air was near the sources that were investigated due to possible leakage and in the bottom ash hall. However, the concentrations were near measured background concentrations in European cities and no leakage could be detected. The high concentrations were assumed to be a result of a lot of dust and particles present on surfaces that had not been cleaned in a while. The main source of the dust and particles present inside the waste incineration plant was thought to be particles and dust from the outside air. Other activities in the area around the waste incineration facility are ground work activities, stone crushing and traffic, which probably are sources of particle formation. Filtration of the outside air prior entering the facility would probably save personnel and visitors from nuisance and save in cleaning and maintenance costs.

Functional Genomic Approaches for Deciphering Plant-Virus Interactions

Plant-virus interactions are very complex in nature and lead to disease and symptom formation by causing various physiological, metabolic and developmental changes in the host plants. These interactions are mainly the outcomes of viral hijacking of host components to complete their infection cycles and of host defensive responses to restrict the viral infections. Viral genomes contain only a small number of genes often encoding for multifunctional proteins, and all are essential in establishing a viral infection. Thus, it is important to understand the specific roles of individual viral genes and their contribution to the viral life cycles. Among the most important viral proteins are the suppressors of RNA silencing (VSRs). These proteins function to suppress host defenses mediated by RNA silencing and can also serve in other functions, e.g. in viral movement, transactivation of host genes, virus replication and protein processing. Thus these proteins are likely to have a significant impact on host physiology and metabolism. In the present study, I have examined the plant-virus interactions and the effects of three different VSRs on host physiology and gene expression levels by microarray analysis of transgenic plants that express these VSR genes. I also studied the gene expression changes related to the expression of the whole genome of Tobacco mosaic virus (TMV) in transgenic tobacco plants. Expression of the VSR genes in the transgenic tobacco plants causes significant changes in the gene expression profiles. HC-Pro gene derived from the Potyvirus Y (PVY) causes alteration of 748 and 332 transcripts, AC2 gene derived from the African cassava mosaic virus (ACMV) causes alteration of 1118 and 251transcripts, and P25 gene derived from the Potyvirus X (PVX) causes alterations of 1355 and 64 transcripts in leaves and flowers, respectively. All three VSRs cause similar up-regulation in defense, hormonally regulated and different stress-related genes and down-regulation in the photosynthesis and starch metabolism related genes. They also induce alterations that are specific to each viral VSR. The phenotype and transcriptome alterations of the HC-Pro expressing transgenic plants are similar to those observed in some Potyvirus-infected plants. The plants show increased protein degradation, which may be due to the HC-Pro cysteine endopeptidase and thioredoxin activities. The AC2-expressing transgenic plants show a similar phenotype and gene expression pattern as HC-Pro-expressing plants, but also alter pathways related to jasmonic acid, ethylene and retrograde signaling. In the P25 expressing transgenic plants, high numbers of genes (total of 1355) were up-regulated in the leaves, compared to a very low number of down-regulated genes (total of 5). Despite of strong induction of the transcripts, only mild growth reduction and no other distinct phenotype was observed in these plants. As an example of whole virus interactions with its host, I also studied gene expression changes caused by Tobacco mosaic virus (TMV) in tobacco host in three different conditions, i.e. in transgenic plants that are first resistant to the virus, and then become susceptible to it and in wild type plants naturally infected with this virus. The microarray analysis revealed up and down-regulation of 1362 and 1422 transcripts in the TMV resistant young transgenic plants, and up and down-regulation of a total of 1150 and 1200 transcripts, respectively, in the older plants, after the resistance break. Natural TMV infections in wild type plants caused up-regulation of 550 transcripts and down-regulation of 480 transcripts. 124 up-regulated and 29 down-regulated transcripts were commonly altered between young and old TMV transgenic plants, and only 6 up-regulated and none of the down-regulated transcripts were commonly altered in all three plants. During the resistant stage, the strong down-regulation in translation-related transcripts (total of 750 genes) was observed. Additionally, transcripts related to the hormones, protein degradation and defense pathways, cell division and stress were distinctly altered. All these alterations may contribute to the TMV resistance in the young transgenic plants, and the resistance may also be related to RNA silencing, despite of the low viral abundance and lack of viral siRNAs or TMV methylation activity in the plants.