Genome selection in fruit breeding: application to table grapes.

Genomic selection (GS) has recently been proposed as a new selection strategy which represents an innovative paradigm in crop improvement, now widely adopted in animal breeding. Genomic selection relies on phenotyping and high-density genotyping of a sufficiently large and representative sample of the target breeding population, so that the majority of loci that regulate a quantitative trait are in linkage disequilibrium with one or more molecular markers and can thus be captured by selection. In this study we address genomic selection in a practical fruit breeding context applying it to a breeding population of table grape obtained from a cross between the hybrid genotype D8909-15 (Vitis rupestris × Vitis arizonica/girdiana), which is resistant to dagger nematode and Pierce?s disease (PD), and ?B90-116?, a susceptible Vitis vinifera cultivar with desirable fruit characteristics. Our aim was to enhance the knowledge on the genomic variation of agronomical traits in table grape populations for future use in marker-assisted selection (MAS) and GS, by discovering a set of molecular markers associated with genomic regions involved in this variation. A number of Quantitative Trait Loci (QTL) were discovered but this method is inaccurate and the genetic architecture of the studied population was better captured by the BLasso method of genomic selection, which allowed for efficient inference about the genetic contribution of the various marker loci. The technology of genomic selection afforded greater efficiency than QTL analysis and can be very useful in speeding up the selection procedures for agronomic traits in table grapes.

Factor analysis applied to genome prediction for high-dimensional phenotypes in pigs.

The aim of the present study was to propose and evaluate the use of factor analysis (FA) in obtaining latent variables (factors) that represent a set of pig traits simultaneously, for use in genome-wide selection (GWS) studies. We used crosses between outbred F2 populations of Brazilian Piau X commercial pigs. Data were obtained on 345 F2 pigs, genotyped for 237 SNPs, with 41 traits. FA allowed us to obtain four biologically interpretable factors: ?weight?, ?fat?, ?loin?, and ?performance?. These factors were used as dependent variables in multiple regression models of genomic selection (Bayes A, Bayes B, RR-BLUP, and Bayesian LASSO). The use of FA is presented as an interesting alternative to select individuals for multiple variables simultaneously in GWS studies; accuracy measurements of the factors were similar to those obtained when the original traits were considered individually. The similarities between the top 10% of individuals selected by the factor, and those selected by the individual traits, were also satisfactory. Moreover, the estimated markers effects for the traits were similar to those found for the relevant factor.

Selectivity and efficiency of herbicides in weed control on sweet sorghum.

A carência de herbicidas registrados para o controle de plantas daninhas, em sorgo sacarino, torna-se fator limitante à produção. Objetivou-se avaliar a seletividade de herbicidas em sorgo sacarino e a eficiência no controle de plantas daninhas. O delineamento experimental foi de blocos ao acaso, com quarto repetições. Os tratamentos incluíram cultivares de sorgo sacarino (BRS 506, BRS 509 e BRS 511) e herbicidas aplicados isoladamente em pré-emergência (atrazine - 1.500 g ha-1; atrazine + s-metolachlor - 1.665 g ha-1 + 1.035 g ha-1; flumioxazin - 50 g ha-1; s-metolachlor - 1.440 g ha-1) e pós-emergência (tembotrione - 100,8 g ha-1) e de forma sequencial em pré e pós-emergência (atrazine + s-metolachlor + tembotrione - 1.665 g ha-1 + 1.035 g ha-1 + 100,8 g ha-1; atrazine + tembotrione - 1.500 g ha-1 + 100,8 g ha-1; flumioxazin + tembotrione - 50 g ha-1 + 100,8 g ha-1), mais duas testemunhas, uma capinada e outra sem capina. A fitotoxicidade ao sorgo foi de 98,0 %, 98,0 % e 100 % de tembotrione; 100 %, 98,7 % e 100 % de flumioxazin + tembotrione; 100 %, 100 % e 100 % de atrazine + s-metolachlor + tembotrione; e 98,7 %, 98,7 % e 99,7 % de atrazine + tembotrione, respectivamente para as cultivares BRS 509, BRS 506 e BRS 511. Tembotrione, flumioxazin + tembotrione, atrazine + s-metolachlor + tembotrione e atrazine + tembotrione apresentaram bom controle de Ipomoea indivisa, Digitaria ciliaris e Urochloa plantaginea, porém, não demonstraram seletividade às cultivares de sorgo. O atrazine, de modo geral, apresentou maior seletividade aos componentes de rendimento das cultivares BRS 509 e BRS 506.

Bioecology of Spodoptera frugiperda (Smith, 1757) in different cover crops.

The objective of this work was to evaluate the biological variables of Spodoptera frugiperda on species of cover crops. The experiments were conducted in laboratory and greenhouse using the following species: sunflower (Helianthus annuus), sun hemp (Crotalaria juncea), brachiaria (Urochloa decumbens e Urochloa ruziziensis), millet (Pennisetum americanum), black oat (Avena stringosa), white lupin (Lupinus albus), forage turnip (Rafanus sativus) and maize (Zea mays). In laboratory the S. frugiperda larval survival varied from 57%, on L. albus, to 93% on H. annuus and the survival of the pre-imaginal phase varied from 45% on U. decumbens to 81.6% on Z. mays. On C. juncea the larval biomass was lower and the development period of the young and larval stage was higher. The adaptation index was less on C. juncea in greenhouse and laboratory. In greenhouse the larval survival at 14 days was similar for all plants and at 21 days was the lowest on C. juncea. There was less accumulation of biomass at 14 days on C. juncea and at 21 days on C. juncea and A. stringosa. Regarding damage, C. juncea presented less susceptibility to Spodoptera frugiperda attack, which together with the other evaluated parameters, indicated this plant as the most appropriate for soil cover before cultivation of maize.

Alleles of organic acid transporter genes are highly correlated with wheat resistance to acidic soil in field conditions.

2016

Resistance to Fusarium wilt in common bean cultivars and lines in pre-commercial stage.

The objective of this study was to identify common bean cultivars with resistance to Fusarium wilt.

Productivity, adaptability and stability of production of special grain common bean lines in different environments of Minas Gerais, Brazil.

This study aimed to select special grain bean lines with high productivity, adaptability and stability of production, evaluated in different environments of the Minas Gerais State, Brazil.

Production of Syrah wines in tropical conditions of Northeast Brazil.

Twenty years ago, in the Northeast Brazil, a tropical semi-arid area, the production of tropical wines from some Vitis vinifera L. cultivars started. In this region, it is possible to harvest two times a year, between April and December, and nowadays Syrah is the most cultivated wine grape. Research works about irrigation rnanagement in Syrah started in 2000 at Brazilian Agricultural Research Corporation (Embrapa). The aim of this paper is to introduce some characteristics about the region where Syrah grapevines is being cultivated under irrigation in Northeast Brazil, and to present some results obtained from field experiments as well as some grape and wine charcteristics already determined.

The relationship between population structure and aluminum tolerance in cultivated sorghum.

2011

Menopause in Central America: attitudes, symptoms and treatment.

UCR::Investigación::Unidades de Investigación::Ciencias Básicas::Centro de Investigaciones en Productos Naturales (CIPRONA)

Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains.

2011

Two's a crowd: phenotypic adjustments and prophylaxis in anticarsia gemmatalis larvae are triggered by the presence of conspecifics.

2013

Validation of reference housekeeping genes for gene expression studies in western corn rootworm (Diabrotica virgifera virgifera).

2014

Nomuraea rileyi (Hypocreales: Clavicipitaceae) in Helicoverpa armigera (Lepidoptera: Noctuidae) Larvae in Brazil.

2015

Farm water productivity in broiler production: case studies in Brazil.

2016