Insights into post-translational processing of beta-galactosidase in an animal model resembling late infantile human G-gangliosidosis

G(M1)-gangliosidosis is a lysosomal storage disorder caused by a deficiency of ss-galactosidase activity. Human GM1-gangliosidosis has been classified into three forms according to the age of clinical onset and specific biochemical parameters. In the present study, a canine model for type II late infantile human GM1-gangliosidosis was investigated 'in vitro' in detail. For a better understanding of the molecular pathogenesis underlying G(M1)-gangliosidosis the study focused on the analysis of the molecular events and subsequent intracellular protein trafficking of beta-galactosidase. In the canine model the genetic defect results in exclusion or inclusion of exon 15 in the mRNA transcripts and to translation of two mutant precursor proteins. Intracellular localization, processing and enzymatic activity of these mutant proteins were investigated. The obtained results suggested that the beta-galactosidase C-terminus encoded by exons 15 and 16 is necessary for correct C-terminal proteolytic processing and enzyme activity but does not affect the correct routing to the lysosomes. Both mutant protein precursors are enzymatically inactive, but are transported to the lysosomes clearly indicating that the amino acid sequences encoded by exons 15 and 16 are necessary for correct folding and association with protective protein/cathepsin A, whereas the routing to the lysosomes is not influenced. Thus, the investigated canine model is an appropriate animal model for the human late infantile form and represents a versatile system to test gene therapeutic approaches for human and canine G(M1)-gangliosidosis.

Evidence for cooler European summers during periods of changing meltwater flux to the North Atlantic

We analyzed fossil chironomids (nonbiting midges) and pollen in two lake-sediment records to reconstruct and quantify Holocene summer-temperature fluctuations in the European Alps. Chironomid and pollen records indicate five centennial-scale cooling episodes during the early- and mid-Holocene. The strongest temperature declines of ≈1°C are inferred at ≈10,700–10,500 and 8,200–7,600 calibrated 14C years B.P., whereas other temperature fluctuations are of smaller amplitude. Two forcing mechanisms have been presented recently to explain centennial-scale climate variability in Europe during the early- and mid-Holocene, both involving changes in Atlantic thermohaline circulation. In the first mechanism, changes in meltwater flux from the North American continent to the North Atlantic are responsible for changes in the Atlantic thermohaline circulation, thereby affecting circum-Atlantic climate. In the second mechanism, solar variability is the cause of Holocene climatic fluctuations, possibly triggering changes in Atlantic thermohaline overturning. Within their dating uncertainty, the two major cooling periods in the European Alps are coeval with substantial changes in the routing of North American freshwater runoff to the North Atlantic, whereas quantitatively, our climatic reconstructions show a poor agreement with available records of past solar activity. Thus, our results suggest that, during the early- and mid-Holocene, freshwater-induced Atlantic circulation changes had stronger influence on Alpine summer temperatures than solar variability and that Holocene thermohaline circulation reductions have led to summer-temperature declines of up to 1°C in central Europe.

Information-Centric Content Retrieval for Delay-Tolerant Networks

The shift from host-centric to information-centric networking (ICN) promises seamless communication in mobile networks. However, most existing works either consider well-connected networks with high node density or introduce modifications to {ICN} message processing for delay-tolerant Networking (DTN). In this work, we present agent-based content retrieval, which provides information-centric {DTN} support as an application module without modifications to {ICN} message processing. This enables flexible interoperability in changing environments. If no content source can be found via wireless multi-hop routing, requesters may exploit the mobility of neighbor nodes (called agents) by delegating content retrieval to them. Agents that receive a delegation and move closer to content sources can retrieve data and return it back to requesters. We show that agent-based content retrieval may be even more efficient in scenarios where multi-hop communication is possible. Furthermore, we show that broadcast communication may not be necessarily the best option since dynamic unicast requests have little overhead and can better exploit short contact times between nodes (no broadcast delays required for duplicate suppression).

Two independent and primitive envelopes of the bilobate nucleus of comet 67P

The factors shaping cometary nuclei are still largely unknown, but could be the result of concurrent effects of evolutionary(1,2) and primordial processes(3,4). The peculiar bilobed shape of comet 67P/Churyumov-Gerasimenko may be the result of the fusion of two objects that were once separate or the result of a localized excavation by outgassing at the interface between the two lobes(5). Here we report that the comet's major lobe is enveloped by a nearly continuous set of strata, up to 650 metres thick, which are independent of an analogous stratified envelope on the minor lobe. Gravity vectors computed for the two lobes separately are closer to perpendicular to the strata than those calculated for the entire nucleus and adjacent to the neck separating the two lobes. Therefore comet 67P/Churyumov-Gerasimenko is an accreted body of two distinct objects with 'onion-like' stratification, which formed before they merged. We conclude that gentle, low-velocity collisions occurred between two fully formed kilometre-sized cometesimals in the early stages of the Solar System. The notable structural similarities between the two lobes of comet 67P/Churyumov-Gerasimenko indicate that the early-forming cometesimals experienced similar primordial stratified accretion, even though they formed independently.

Information-centric communication in mobile and wireless networks

Information-centric networking (ICN) is a new communication paradigm that has been proposed to cope with drawbacks of host-based communication protocols, namely scalability and security. In this thesis, we base our work on Named Data Networking (NDN), which is a popular ICN architecture, and investigate NDN in the context of wireless and mobile ad hoc networks. In a first part, we focus on NDN efficiency (and potential improvements) in wireless environments by investigating NDN in wireless one-hop communication, i.e., without any routing protocols. A basic requirement to initiate informationcentric communication is the knowledge of existing and available content names. Therefore, we develop three opportunistic content discovery algorithms and evaluate them in diverse scenarios for different node densities and content distributions. After content names are known, requesters can retrieve content opportunistically from any neighbor node that provides the content. However, in case of short contact times to content sources, content retrieval may be disrupted. Therefore, we develop a requester application that keeps meta information of disrupted content retrievals and enables resume operations when a new content source has been found. Besides message efficiency, we also evaluate power consumption of information-centric broadcast and unicast communication. Based on our findings, we develop two mechanisms to increase efficiency of information-centric wireless one-hop communication. The first approach called Dynamic Unicast (DU) avoids broadcast communication whenever possible since broadcast transmissions result in more duplicate Data transmissions, lower data rates and higher energy consumption on mobile nodes, which are not interested in overheard Data, compared to unicast communication. Hence, DU uses broadcast communication only until a content source has been found and then retrieves content directly via unicast from the same source. The second approach called RC-NDN targets efficiency of wireless broadcast communication by reducing the number of duplicate Data transmissions. In particular, RC-NDN is a Data encoding scheme for content sources that increases diversity in wireless broadcast transmissions such that multiple concurrent requesters can profit from each others’ (overheard) message transmissions. If requesters and content sources are not in one-hop distance to each other, requests need to be forwarded via multi-hop routing. Therefore, in a second part of this thesis, we investigate information-centric wireless multi-hop communication. First, we consider multi-hop broadcast communication in the context of rather static community networks. We introduce the concept of preferred forwarders, which relay Interest messages slightly faster than non-preferred forwarders to reduce redundant duplicate message transmissions. While this approach works well in static networks, the performance may degrade in mobile networks if preferred forwarders may regularly move away. Thus, to enable routing in mobile ad hoc networks, we extend DU for multi-hop communication. Compared to one-hop communication, multi-hop DU requires efficient path update mechanisms (since multi-hop paths may expire quickly) and new forwarding strategies to maintain NDN benefits (request aggregation and caching) such that only a few messages need to be transmitted over the entire end-to-end path even in case of multiple concurrent requesters. To perform quick retransmission in case of collisions or other transmission errors, we implement and evaluate retransmission timers from related work and compare them to CCNTimer, which is a new algorithm that enables shorter content retrieval times in information-centric wireless multi-hop communication. Yet, in case of intermittent connectivity between requesters and content sources, multi-hop routing protocols may not work because they require continuous end-to-end paths. Therefore, we present agent-based content retrieval (ACR) for delay-tolerant networks. In ACR, requester nodes can delegate content retrieval to mobile agent nodes, which move closer to content sources, can retrieve content and return it to requesters. Thus, ACR exploits the mobility of agent nodes to retrieve content from remote locations. To enable delay-tolerant communication via agents, retrieved content needs to be stored persistently such that requesters can verify its authenticity via original publisher signatures. To achieve this, we develop a persistent caching concept that maintains received popular content in repositories and deletes unpopular content if free space is required. Since our persistent caching concept can complement regular short-term caching in the content store, it can also be used for network caching to store popular delay-tolerant content at edge routers (to reduce network traffic and improve network performance) while real-time traffic can still be maintained and served from the content store.

Influencia de la fertilización y el riego sobre aspectos cuali-cuantitavos de la reproducción de cebolla (Allium cepa L.) para la industria del deshidratado

La creciente demanda, en los últimos años, a nivel mundial y nacional de los productos deshidratados hace que esta actividad se perfile como promisoria en la región cuyana. Prácticamente el 100 % de la deshidratación de cebolla (Allium cepa L.) del país se realiza en Mendoza, habiendose hecho sólo producciones aisladas y de escaso volúmen en otras plantas del país. Las estimaciones preveen que se seguirá abasteciendo el mercado local y se incrementaránlas exportaciones de cebolla deshidratada. El objetivo general del presente trabajo fue establecer la influencia de la fertilización y el riego sobre la productividad y calidad de un cultivar mejorado de cebolla de importancia económica para la industria del deshidratado. En el Campo Experimental del INTA La Consulta se llevaron a cabo durante los años 1994-´95 y 1995-´96, dos ciclos de ensayos, con una línea de cebolla para deshidratar derivada del cultivar Southport White Globe. El suelo es de origen aluvial, profundo y de textura franca (Torrifluvente típico). Se determinaron los principales parámetros físicos, químicos e hídricos de la fracción fina del suelo. Para determinar el efecto de la fertilización sobre componentes de crecimiento y calidad y estudiar la variación de la concentración y ritmo de absorción de nutrimentos se ensayaron diferentes tratamientos. En el primer ciclo se ensayaron nueve tratamientos con tres niveles de N (0, 100, 200 kg N ha-1 ) aplicado como urea y tres niveles de P (0, 30, 60 kg P ha-1 ) como superfosfato. En el segundo ciclo se probaron ocho tratamientos con los siguientes niveles de N, P y K, respectivamente: (0 y 100 kg N ha-1), (0 y 40 kg P ha-1) y (0 y 60 kg K ha-1), éste último como sulfato de potasio. Para evaluar el efecto de diferentes regímenes de riego al final del ciclo de cultivo sobre la produccción cuantitativa y cualitativa de cebolla para la industria del deshidratado se programaron cortes anticipados de riegos, según diferentes fechas anteriores a la cosecha. Estas fueron para el primero y segundo ciclo de ensayo, respectivamente: (33, 27, 21, 8) y (21,14, 7) días anteriores a la fecha de cosecha estimada. Las principales conclusiones fueron: A) Con respecto a la fertilización: i) En todos los casos, e independientemente del tratamiento ensayado el mayor incremento relativo de sustancia seca aérea se evidencia durante la II fase de viii desarrollo que tiene lugar entre los primeros días de noviembre y mediados de diciembre ii) En dicha II fase se comienzan a manifestar incrementos absolutos de peso seco aéreo y área foliar atribuibles a la fertilización iii) También en todos los tratamientos se verifica que al finalizar la II fase el peso de los bulbos alcanza el 20 % de su peso de cosecha. En ese momento, los valores determinados para el porcentaje de sólidos totales (% ST) oscilan entre 13 % y 14 % iv) La mayor tasa de crecimiento del bulbo se constató en la III fase en la que se logra el 80% restante de su peso final v) En la III fase el % ST del bulbo sigue en aumento hasta casi el momento de cosecha y alcanzó valores promedios de 20 % y 21 %. La fertilización con diferentes dosis de N, P y K no influyó en el contenido de materia seca de los bulbos aunque sí lo hizo positivamente sobre su peso fresco vi) Los máximos rendimientos de bulbos (37.3 Mg ha-1) y de materia seca (7.92 Mg ha-1) se obtuvieron, en el segundo ciclo de ensayo, con las dosis de 100 kg N ha-1 y 40 kg P ha-1 vii) Los parámetros tisulares aéreos de valor diagnóstico asociados a máximosrendimientos, y al final de la II fase, correspondieron a una Alimentación Global (N, P, K) de 4.96 g % g s. seca y concentraciones de N, P y K respectivamente de: 2.56 g %, 0.22 g % y 2.18 g %. En cuanto a los tenores de Ca y Mg los porcentajes respectivos fueron: 2.10 g % y 0.16 g %. Los valores medios de equilibrios nutricionales fueron: N - P - K: 52 % - 4% - 44%. Con respecto a los micronutrimentos sus concentraciones fueron, en mg kg-1, Fe: 400, Zn: 55, Mn: 35 y Cu:19 y los valores de equilibrios nutricionales : 78.5 % - 11 % - 7 % - 3.5 %, respectivamente viii) La extracción total efectuada por el cultivo para esas máximas producciones, en kg ha-1, de N - P - K - Ca - Mg fueron: 214 - 40 -187 - 184 -19 B) Con respecto a los regímenes de riego: i) El rendimiento máximo obtenido -38.9 Mg ha-1- en el ensayo de cortes anticipados de riego correspondió al tratamiento R7 del ciclo 1995-‘96 ii) El mismo perteneció al tratamiento, que además de la fertilización básica con 100 kg N ha-1, aseguró durante los meses de noviembre, diciembre y enero, ix hasta siete días antes de cosecha, una humedad edáfica mínima (umbral de riego) correspondiente al 50 % del agua disponible. Este tratamiento se caracterizó por un total de 18 riegos y una incorporación de agua de 6120 m3 ha-1. iii) Los rendimientos totales de materia seca fueron afectados detrimentalmente por los otros regímenes de riego de cortes más anticipados iv) Se constató una relación lineal positiva altamente ignificativa entre el rendimiento y la lámina total de agua aplicada al cultivo.

Asociaciones entre clones y anormalidades morfológicas en ajo

Con el objeto de detectar la influencia del genotipo en la presencia de anormalidades morfológicas, se tomó una muestra de 200 bulbillos de cada uno de los 7 clones de ajo colorado, incluidos en un ensayo experimental en bloques completamente aleatorizados con 4 repeticiones, en un solo ambiente de expresión. En cada clon se computaron las proporciones de bulbos normales, pera, cebollón y doble. En los bulbos normales se midió la distribución de calibres. Se compararon las proporciones de anormalidades entre los clones. Un clon se diferenció (p < 0,05) de los restantes por no poseer malformaciones y presentar un calibre promedio bajo. Utilizando en conjunto la información obtenida, se realizó un análisis de componentes principales y de conglomerado. Se utilizó la distancia euclidiana promedio y el método de ligamiento promedio. Los dos primeros ejes del análisis de componentes principales representaron el 74% de la variación de los datos. La información obtenida permitió reunir 3 grupos de clones por su asociación a calibres y anormalidades morfológicas. El primer grupo formado por un clon sin anormalidades y con mayor proporción de calibre 4 y 5; el segundo, de cuatro clones con presencia de ajo cebollón y el tercero, de dos clones asociados a los bulbos pera, dobles y de calibres 6. Se demostró la influencia del genotipo en la frecuencia de anormalidades morfológicas.

Estrategia de manejo para el control de Thrips tabaci Lind. en ajo colorado

En cultivos de ajo colorado de Luján de Cuyo (Mendoza, Argentina) realizados en 1996/97/98 se compararon tres alternativas de manejo para el control del trips del ajo y la cebolla: a) control químico en tiempos calendarios sin considerar la dinámica poblacional, modalidad del productor b) control químico teniendo en cuenta la dinámica poblacional c) sin tratamientos químicos Los resultados obtenidos no muestran diferencias estadísticamente significativas en los rendimientos del cultivo (p > 0,05) para las condiciones del ensayo y no se recomienda el empleo de tratamientos químicos.

(Table 1) Basin area, average late-summer speedup, number of sinks and runoff of West Greenland Ice Sheet catchments

We use interferometric synthetic aperture radar observations recorded in a land-terminating sector of western Greenland to characterise the ice sheet surface hydrology and to quantify spatial variations in the seasonality of ice sheet flow. Our data reveal a non-uniform pattern of late-summer ice speedup that, in places, extends over 100 km inland. We show that the degree of late-summer speedup is positively correlated with modelled runoff within the 10 glacier catchments of our survey, and that the pattern of late-summer speedup follows that of water routed at the ice sheet surface. In late-summer, ice within the largest catchment flows on average 48% faster than during winter, whereas changes in smaller catchments are less pronounced. Our observations show that the routing of seasonal runoff at the ice sheet surface plays an important role in shaping the magnitude and extent of seasonal ice sheet speedup.

Contribución a los modelos de gestión de las redes móviles ad hoc

La capacidad de comunicación de los seres humanos ha crecido gracias a la evolución de dispositivos móviles cada vez más pequeños, manejables, potentes, de mayor autonomía y más asequibles. Esta tendencia muestra que en un futuro próximo cercano cada persona llevaría consigo por lo menos un dispositivo de altas prestaciones. Estos dispositivos tienen incorporados algunas formas de comunicación: red de telefonía, redes inalámbricas, bluetooth, entre otras. Lo que les permite también ser empleados para la configuración de redes móviles Ad Hoc. Las redes móviles Ad Hoc, son redes temporales y autoconfigurables, no necesitan un punto de acceso para que los nodos intercambien información entre sí. Cada nodo realiza las tareas de encaminador cuando sea requerido. Los nodos se pueden mover, cambiando de ubicación a discreción. La autonomía de estos dispositivos depende de las estrategias de como sus recursos son utilizados. De tal forma que los protocolos, algoritmos o modelos deben ser diseñados de forma eficiente para no impactar el rendimiento del dispositivo, siempre buscando un equilibrio entre sobrecarga y usabilidad. Es importante definir una gestión adecuada de estas redes especialmente cuando estén siendo utilizados en escenarios críticos como los de emergencias, desastres naturales, conflictos bélicos. La presente tesis doctoral muestra una solución eficiente para la gestión de redes móviles Ad Hoc. La solución contempla dos componentes principales: la definición de un modelo de gestión para redes móviles de alta disponibilidad y la creación de un protocolo de enrutamiento jerárquico asociado al modelo. El modelo de gestión propuesto, denominado High Availability Management Ad Hoc Network (HAMAN), es definido en una estructura de cuatro niveles, acceso, distribución, inteligencia e infraestructura. Además se describen los componentes de cada nivel: tipos de nodos, protocolos y funcionamiento. Se estudian también las interfaces de comunicación entre cada componente y la relación de estas con los niveles definidos. Como parte del modelo se diseña el protocolo de enrutamiento Ad Hoc, denominado Backup Cluster Head Protocol (BCHP), que utiliza como estrategia de encaminamiento el empleo de cluster y jerarquías. Cada cluster tiene un Jefe de Cluster que concentra la información de enrutamiento y de gestión y la envía al destino cuando esta fuera de su área de cobertura. Para mejorar la disponibilidad de la red el protocolo utiliza un Jefe de Cluster de Respaldo el que asume las funciones del nodo principal del cluster cuando este tiene un problema. El modelo HAMAN es validado a través de un proceso la simulación del protocolo BCHP. El protocolo BCHP se implementa en la herramienta Network Simulator 2 (NS2) para ser simulado, comparado y contrastado con el protocolo de enrutamiento jerárquico Cluster Based Routing Protocol (CBRP) y con el protocolo de enrutamiento Ad Hoc reactivo denominado Ad Hoc On Demand Distance Vector Routing (AODV). Abstract The communication skills of humans has grown thanks to the evolution of mobile devices become smaller, manageable, powerful, more autonomy and more affordable. This trend shows that in the near future each person will carry at least one high-performance device. These high-performance devices have some forms of communication incorporated: telephony network, wireless networks, bluetooth, among others. What can also be used for configuring mobile Ad Hoc networks. Ad Hoc mobile networks, are temporary and self-configuring networks, do not need an access point for exchange information between their nodes. Each node performs the router tasks as required. The nodes can move, change location at will. The autonomy of these devices depends on the strategies of how its resources are used. So that the protocols, algorithms or models should be designed to efficiently without impacting device performance seeking a balance between overhead and usability. It is important to define appropriate management of these networks, especially when being used in critical scenarios such as emergencies, natural disasters, wars. The present research shows an efficient solution for managing mobile ad hoc networks. The solution comprises two main components: the definition of a management model for highly available mobile networks and the creation of a hierarchical routing protocol associated with the model. The proposed management model, called High Availability Management Ad Hoc Network (HAMAN) is defined in a four-level structure: access, distribution, intelligence and infrastructure. The components of each level: types of nodes, protocols, structure of a node are shown and detailed. It also explores the communication interfaces between each component and the relationship of these with the levels defined. The Ad Hoc routing protocol proposed, called Backup Cluster Head Protocol( BCHP), use of cluster and hierarchies like strategies. Each cluster has a cluster head which concentrates the routing information and management and sent to the destination when out of cluster coverage area. To improve the availability of the network protocol uses a Backup Cluster Head who assumes the functions of the node of the cluster when it has a problem. The HAMAN model is validated accross the simulation of their BCHP routing protocol. BCHP protocol has been implemented in the simulation tool Network Simulator 2 (NS2) to be simulated, compared and contrasted with a hierarchical routing protocol Cluster Based Routing Protocol (CBRP) and a routing protocol called Reactive Ad Hoc On Demand Distance Vector Routing (AODV).

A Precharge-Absorbed DPL Logic for Reducing Early Propagation Effects on FPGA Implementations

In this paper, a new countermeasure against power and electromagnetic (EM) Side Channel Attacks (SCA) on FPGA implemented cryptographic algorithms is proposed. This structure mainly focuses on a critical vulnerability, Early Evaluation, also known as Early Propagation Effect (EPE), which exists in most conventional SCA-hardened DPL (Dual-rail with Precharge Logic) solutions. The main merit of this proposal is that the EPE can be effectively prevented by using a synchronized non regular precharge network, which maintains identical routing between the original and mirror parts, where costs and design complexity compared with previous EPE-resistant countermeasures are reduced, while security level is not sacrificed. Another advantage for our Precharge Absorbed(PA) - DPL method is that its Dual-Core style (independent architecture for true and false parts) could be generated using partial reconfiguration. This helps to get a dynamic security protection with better energy planning. That means system only keeps the true part which fulfills the normal en/decryption task in low security level, and reconfigures the false parts once high security level is required. A relatively limited clock speed is a compromise, since signal propagation is restricted to a portion of the clock period. In this paper, we explain the principles of PA-DPL and provide the guidelines to design this structure. We experimentally validate our methods in a minimized AES co-processor on Xilinx Virtex-5 board using electromagnetic (EM) attacks.

A Light-Weight On-Chip Monitoring Network for Dynamic Adaptation and Calibration

Current nanometer technologies suffer within-die parameter uncertainties, varying workload conditions, aging, and temperature effects that cause a serious reduction on yield and performance. In this scenario, monitoring, calibration, and dynamic adaptation become essential, demanding systems with a collection of multi purpose monitors and exposing the need for light-weight monitoring networks. This paper presents a new monitoring network paradigm able to perform an early prioritization of the information. This is achieved by the introduction of a new hierarchy level, the threshing level. Targeting it, we propose a time-domain signaling scheme over a single-wire that minimizes the network switching activity as well as the routing requirements. To validate our approach, we make a thorough analysis of the architectural trade-offs and expose two complete monitoring systems that suppose an area improvement of 40% and a power reduction of three orders of magnitude compared to previous works.

Cysteine-proteases and cystatins from barley: molecular and functional characterization in housekeeping and defense processes

Plant cysteine-proteases (CysProt) represent a well-characterized type of proteolytic enzymes that fulfill tightly regulated physiological functions (senescence and seed germination among others) and defense roles. This article is focused on the group of papain-proteases C1A (family C1, clan CA) and their inhibitors, phytocystatins (PhyCys). In particular, the protease–inhibitor interaction and their mutual participation in specific pathways throughout the plant's life are reviewed. C1A CysProt and PhyCys have been molecularly characterized, and comparative sequence analyses have identified consensus functional motifs. A correlation can be established between the number of identified CysProt and PhyCys in angiosperms. Thus, evolutionary forces may have determined a control role of cystatins on both endogenous and pest-exogenous proteases in these species. Tagging the proteases and inhibitors with fluorescence proteins revealed common patterns of subcellular localization in the endoplasmic reticulum–Golgi network in transiently transformed onion epidermal cells. Further in vivo interactions were demonstrated by bimolecular fluorescent complementation, suggesting their participation in the same physiological processes.