Genome-wide survey of putative serine/threonine protein kinases in cyanobacteria

Background: Serine/threonine kinases (STKs) have been found in an increasing number of prokaryotes, showing important roles in signal transduction that supplement the well known role of two-component system. Cyanobacteria are photoautotrophic prokaryotes able to grow in a wide range of ecological environments, and their signal transduction systems are important in adaptation to the environment. Sequence information from several cyanobacterial genomes offers a unique opportunity to conduct a comprehensive comparative analysis of this kinase family. In this study, we extracted information regarding Ser/Thr kinases from 21 species of sequenced cyanobacteria and investigated their diversity, conservation, domain structure, and evolution. Results: 286 putative STK homologues were identified. STKs are absent in four Prochlorococcus strains and one marine Synechococcus strain and abundant in filamentous nitrogen-fixing cyanobacteria. Motifs and invariant amino acids typical in eukaryotic STKs were conserved well in these proteins, and six more cyanobacteria- or bacteria-specific conserved residues were found. These STK proteins were classified into three major families according to their domain structures. Fourteen types and a total of 131 additional domains were identified, some of which are reported to participate in the recognition of signals or substrates. Cyanobacterial STKs show rather complicated phylogenetic relationships that correspond poorly with phylogenies based on 16S rRNA and those based on additional domains. Conclusion: The number of STK genes in different cyanobacteria is the result of the genome size, ecophysiology, and physiological properties of the organism. Similar conserved motifs and amino acids indicate that cyanobacterial STKs make use of a similar catalytic mechanism as eukaryotic STKs. Gene gain-and-loss is significant during STK evolution, along with domain shuffling and insertion. This study has established an overall framework of sequence-structure-function interactions for the STK gene family, which may facilitate further studies of the role of STKs in various organisms.

Long-Wave Dynamics of Sea Level Variations during Indian Ocean Dipole Events

Long-wave dynamics of the interannual variations of the equatorial Indian Ocean circulation are studied using an ocean general circulation model forced by the assimilated surface winds and heat flux of the European Centre for Medium-Range Weather Forecasts. The simulation has reproduced the sea level anomalies of the Ocean Topography Experiment (TOPEX)/Poseidon altimeter observations well. The equatorial Kelvin and Rossby waves decomposed from the model simulation show that western boundary reflections provide important negative feedbacks to the evolution of the upwelling currents off the Java coast during Indian Ocean dipole (IOD) events. Two downwelling Kelvin wave pulses are generated at the western boundary during IOD events: the first is reflected from the equatorial Rossby waves and the second from the off-equatorial Rossby waves in the southern Indian Ocean. The upwelling in the eastern basin during the 1997-98 IOD event is weakened by the first Kelvin wave pulse and terminated by the second. In comparison, the upwelling during the 1994 IOD event is terminated by the first Kelvin wave pulse because the southeasterly winds off the Java coast are weak at the end of 1994. The atmospheric intraseasonal forcing, which plays an important role in inducing Java upwelling during the early stage of an IOD event, is found to play a minor role in terminating the upwelling off the Java coast because the intraseasonal winds are either weak or absent during the IOD mature phase. The equatorial wave analyses suggest that the upwelling off the Java coast during IOD events is terminated primarily by western boundary reflections.

青藏高原不同海拔地区唐古特山莨菪叶片光合色素含量和抗氧化酶活性的比较研究

以青藏高原东北隅的西宁和海北（海拔分别为2 300 m和3 200 m）人工栽培唐古特山莨菪为材料,对两不同海拔地区间各叶层叶片光合色素含量和抗氧化酶活性等生理指标进行比较分析.结果显示：（1）生长在海北的唐古特山莨菪叶片厚度极显著高于西宁（P〈0.01）,且两地区植物的叶片厚度从第1层到第4层均呈显著增加趋势;海北唐古特山莨菪叶片的叶绿素a、叶绿素b、总叶绿素、类胡萝卜素含量以及紫外吸收物质的含量均显著高于西宁地区（P〈0.05）,从第1层到第4层,两地植株叶片的光合色素和紫外吸收物质的含量都呈降低的趋势,且两地区间差异显著;叶绿素a/b的层间差异显著（P〈0.05）,但两海拔地区间差异不显著;类胡萝卜素/叶绿素比值海北高于西宁,从第1层到第4层叶片呈降低趋势.（2）生长于海北的唐古特山莨菪叶片组织中的SOD、CAT活性和MDA含量比西宁的高,POD、APX则相反;从第1层叶片到第4层,西宁和海北唐古特山莨菪叶片中的SOD活性显著增高（P〈0.05）,但两地区各层间的CAT、POD、APX活性和MDA含量无明显的变化.研究表明,不同海拔对唐古特山莨菪叶片的生理特性有影响,同一海拔不同叶层叶片之间差异也较为明显;生长在高海拔地区的植物尽管表现出诸多生理适应特征,但膜系统依然有一定受损.

南海北部大陆边缘盆地深部地热特征用地球动力学演化

This report is a conclusion of the major research outcome during my post-doctoral residence of research and work. Its content covers the researches of the deep thermal characteristic and dynamics evolution beneath the northern margin basin of South China Sea. In this report, the each other action and effect between lithosphere ad mantle convection were regarded by the combine of deep and shallow study, subdivision from whole to part, and pay equal attention to determine the nature and fixed quantity. The investigative method we used in this report is geothermal and gravity methods. By the help of geological model and geophysics modeling, we calculated lithosphere thermal structure, rheology structure and mantle convection. Firstly, the report introduces concisely the purpose and the previous achievement to this research. Then, it analyzed the characteristic of heat flow on South China Sea. The structure of deep temperature and thermal has been calculated in some models of heat generation and conduction. The rock rheology structure also was computed by the relationship between temperature and viscosity. All these calculations were finished under the guidelines of combine with geology and geophysics. Meanwhile, the fields both deep mantle convection and small scale upper mantle convection are computed. Beside, the density and temperature disorder resulted by mantle convection were also computed with the convection field. After these, the report bring the contribution of local field of mantle convection, thermal construct and effective viscosity beneath the northern margin basin of South China Sea. And, base on the tectonic background and evolution feature, this report discussion the evolution mechanism of south China Sea and its northern margin basin. The end of this report, the main conclusion of this research was summarized and brings out.

渭南地区末次冰期以来的蜗牛化石记录及古气候古环境研究

In this study, 172 mollusk assemblages from the Weinan loess section in the southeast of Loess Plateau, China, were identified quantitatively at relative high resolution. The results show: 1) the history and processes of paleoclimatic and paleoenvironmental changes in Weinan since the last 70 ka; 2) the characteristics of climatic changes during the period of the last glacial maximum (LGM); 3) the spatial pattern of paleoclimate variations at the south and middle parts of the Loess Plateau during the LGM period; 4) the timing of the last deglaciation and the return event of rapid climate change during the last deglaciation. The main conclusions are as follows: 1) 172 mollusk samples taken from the uppermost 9 m deposits cover the past 70 ka, which were sampled at the internals of 5 cm for S_0, 3 cm for L_(1-1) and L_(1-2), and 10 cm for L_(1-3), L_(1-4) and L_(1-5). Author analyzed quantitatively all individuals including broken pieces of snail shells, percentages of 15 species identified from 172 samples. Three main groups were determined according to the ecological requirement of each taxon. Based on the variations of three ecological groups and typical ecological species, The author intended to reconstruct the history of and processes of climate and environment since the last 70 ka in the Weinan region. The climate and environment in this region experienced the following changes: relative warm and humid stage from 67.5-20.3 cal. ka B.P., a period of forest-steppe or steppe developed; cold and arid stage from 20.3-15.5 cal. ka B.P., a dry steppe period, later wetter and colder; cold and humid period once time from 15.5 to 12.3 cal. ka B.P., a typical steppe or forest-steppe stage; cold and humid again from 12.3 cal. ka B.P. to 8.2 cal. ka B.P., a tropical steppe stage; warm and humid climate, a forest-steppe developed. 2) The climate during the period of the last glacial maximum (LGM) in Weinan was characterized by a general cold-humid condition, represented by occurrence of a number of the cool-humidiphilous mollusk species such as Gastocopta amigerella and Vallonia cf. pulchella in the section. 3) Comparison of the variations in abundance of Puncture orphana at Weinan with those at Luochuan and Changwu sections suggests that the summer monsoon intensity influenced differently at the three regions during the LGM period. The Weinan was weaker summer monsoon impact during all the period, the Luochuan was influenced occasionally, and Changwu was only a very short time affected, which indicated it might be located at the western margin of the summer monsoon influence during that period. 4) The ratio of thermo-humidiphilous mollusk group to cold-aridiphilous one shows an increase tendency at about 15 cal. ka B.P., reflecting the climate warming after the deglaciation in Weinan, which is approximately corresponding to the timing of warming period of the last deglaciation, found in the East Atlantic Ocean, the South China Sea and the Loess Plateau (indicated by the phytolith study). 5) A remarkable decrease in the number of thermo-humidiphilous and cool-humidiphilous mollusk species from 12.7 - 11.6 cal. ka B.P. indicates a cooling in climate and might be the reflection of the Younger Dryas event in Weinan. 6) Variations in the ratios of thermo-humidiphilous mollusk species to cold-aridiphilous ones reflect the climate instability in Holocene. There were four warm-humid periods (10-8.1 cal. ka B.P., 6.9-6.1 cal. ka B.P., 5.2-2.6cal. ka B.P., 1.6cal. ka B.P. to the present ) and three relative cold-arid periods (8.1-6.9 cal. ka B.P., 6.1-5.2 cal. ka B.P., 2.6-1.6 cal. ka B.P.), showing about a 1,000 year climatic oscillation.

Synthesis of ordered mesoporous carbons composed of nanotubes via catalytic chemical vapor deposition

Ordered mesoporous carbons composed of arrays of nanotubes have been synthesized using ordered mesoporous silica templates via catalytic chemical vapor deposition. The ordered carbons possess bimodal pores, namely, the pores arise from the "replica" of frameworks of the template and the pores correspond to carbon nanotubes formed in the channels of the template (see Figure).

Inventário de florestas plantadas na Fazenda Experimental da Embrapa Milho e Sorgo.

2007

Aphasia rehabilitation and the strange neglect of speed.

Timing data is infrequently reported in aphasiological literature and time taken is only a minor factor, where it is considered at all, in existing aphasia assessments. This is not surprising because reaction times are difficult to obtain manually, but it is a pity, because speed data should be indispensable in assessing the severity of language processing disorders and in evaluating the effects of treatment. This paper argues that reporting accuracy data without discussing speed of performance gives an incomplete and potentially misleading picture of any cognitive function. Moreover, in deciding how to treat, when to continue treatment and when to cease therapy, clinicians should have regard to both parameters: Speed and accuracy of performance. Crerar, Ellis and Dean (1996) reported a study in which the written sentence comprehension of 14 long-term agrammatic subjects was assessed and treated using a computer-based microworld. Some statistically significant and durable treatment effects were obtained after a short amount of focused therapy. Only accuracy data were reported in that (already long) paper, and interestingly, although it has been a widely read study, neither referees nor subsequent readers seemed to miss "the other side of the coin": How these participants compared with controls for their speed of processing and what effect treatment had on speed. This paper considers both aspects of the data and presents a tentative way of combining treatment effects on both accuracy and speed of performance in a single indicator. Looking at rehabilitation this way gives us a rather different perspective on which individuals benefited most from the intervention. It also demonstrates that while some subjects are capable of utilising metalinguistic skills to achieve normal accuracy scores even many years post-stroke, there is little prospect of reducing the time taken to within the normal range. Without considering speed of processing, the extent of this residual functional impairment can be overlooked.

E-books in academic libraries: an international overview

Tedd, L. A. (2005). E-books in academic libraries: an international overview. New Review of Academic Librarianship, 11(1), 57-79.

A Cult Film by Proxy: Space is the Place and the Sun Ra Mythos

Sexton, J. (2006). A Cult Film by Proxy: Space is the Place and the Sun Ra Mythos. New Review of Film and Television Studies. 4(3), pp.197-215. RAE2008

A Concise History of France

Price, Roger, A Concise History of France (Cambridge: Cambridge University Press, 2005), pp.xiii+491 RAE2008

Nie tylko Dzierżon: wprowadzenie do bibliografii piśmiennictwa pszczelniczego na Śląsku

Zadaniem artykułu jest ukazanie dorobku piśmiennictwa pszczelniczego na Śląsku. Pretekstem do poruszenia tego tematu jest przypadająca w 2011 roku dwusetna rocznica urodzin wybitnego pszczelarza Jana Dzierżona. Osoba i dokonania najsłynniejszego chyba w świecie Ślązaka do tego stopnia zdominowały historię pszczelarstwa tego regionu, że właściwie bardzo niewiele mówi się o dorobku innych działających aktywnie śląskich pszczelarzach praktykach i publicystach. Tymczasem dorobek ten jest imponujący. W części pierwszej artykułu przypomniano Nickela Jacoba ze Szprotawy, autora pierwszej wydanej na Śląsku książki pszczelarskiej, uznanego jednocześnie za ojca niemieckiej bibliografii pszczelarskiej. Wśród pionierów niemieckiej literatury fachowej dotyczącej pszczół znajduje się też Johann Coler ze Złotoryi. W XVIII wieku swą działalność praktyczną i publicystyczną w znacznej mierze związali ze Śląskiem Łużyczanin Adam Gottlieb Schirach i Niemiec Johann Riem. W dziełach innych autorów z zakresu gospodarstwa wiejskiego pojawiają się również fragmenty poświęcone pszczelarstwu. Dorobek swych poprzedników wzbogacił i swą działalnością rozsławił śląskie pszczelarstwo ksiądz dr Jan Dzierżon, odkrywca partenogenezy, konstruktor nowoczesnego ula, autor licznych publikacji. „Księciu pszczół” poświęcona została druga część artykułu. Przedstawiono w niej pokrótce jego życie i działalność, dzieje walki o uznanie teorii partenogenezy, ogromny dorobek publicystyczny. Wskazano jednocześnie na brak opracowania pełnej bibliografii podmiotowej. Dzierżon był wydawcą jednego z pierwszych na Śląsku czasopism pszczelarskich. Dorobek śląskiego czasopiśmiennictwa pszczelarskiego jest bogaty i dziwi fakt, że właściwie w bardzo małym dotychczas stopniu został poznany. Część trzecią poświęcono niemieckim i polskim czasopismom pszczelarskim wydawanym na Śląsku. Uwzględniono tutaj tytuły samoistne oraz dodatki. W podsumowaniu wykazano, że we wszystkich obszarach bibliografia piśmiennictwa śląskiego wymaga kompleksowego rozpoznania. Stan opracowania piśmiennictwa pszczelarskiego na Śląsku stanowi w pewnej mierze odbicie stanu bibliografii tego zagadnienia na ziemiach polskich.

Wergiliusz jako twórca labiryntu

Romani antiqui putabant litteras aedificiis similes esse. Nonnulli scriptores Latini tali modo metaphoras suas composuerunt, ut descriptio aedificii una cum descriptione operis poetici esset. Aeneis etiam effigiem suam continet, quae est ecphrasis portae templi Apollinis. In fabulam Aeneae Vergilius fabulam Daedali introduxit, quae diu doctis ad nihil pertinere videbatur. Falsissime quidem, quia non solum coniunctio fabularum exsistit, sed etiam multae sunt causae fabulae Daedali hoc loco imponendae. Imprimis caelamen monstrat multos casus ex vita Daedali et Aeneae similes fuisse, deinde ostendere Daedalum creatorem hibridarum esse videtur. Aeneis etiam hibrida est, quia constat ex duabus partibus, quae sunt, ut ita dicam, „pars Odysseica” et „pars Iliadica”. Utri (Daedalus Vergiliusque scilicet) sunt ergo creatores hibridarum. Maximi momenti est quaestio: quis dicit “miserum!” in hac parte poematis? Auctrix commentationis censet illum clamantem Vergilium esse, quia poeta constructorem „alter ego” suum esse credebat. Auctrix scripsit etiam imaginem illam, in qua caelata est fabula de Minotauro sine Theseo, viam esse pietatis Aeneae minuendae. Scripsit verba illa quoque opinionem Vergilii de natura poesis et vocem Augusti absconditam esse.

Herod Wielki i „nowa” Jerozolima

Summary: Herod the Great (73-4 B.C.E.) was a Roman client king of the small Jewish state Judaea in the last three decades before the common era. An essential aspect of Herod's reign was his role as a builder. Remarkably innovative, he created an astonishing record of architectural achievement, not only in Judaea but also throughout Greece and the Roman East. Herod’s own inclinations caused him to engage in a building program that paralleled that of his patron, Augustus. The most famous and ambitious project was the expansion of Jerusalem and rebuilding of the Second Temple. Josephus Flavius, a 1st-century Jewish historian, in his descriptions of the visual structure of Jerusalem delivers the picture of the Jewish society in the latter Second Temple Judaea, who were fundamentally antagonistic toward images. For Josephus, Roman iconography, such as Herod’s eagle from the Jerusalem Temple, represents not only political domination but also an unambiguous religious abomination. Visual conservatism in the public realm finds important verification in the excavated remains of Jerusalem’s Temple Mount and the Herodian Quarter (Upper City). Geometric patterns and forms predominate on the floor mosaic, stone furniture, in architectural detail and funerary remains. No human imagery is present in the Jewish context. However, Herodian structures in Jerusalem reflect the architectural and visual vocabulary of their time which contains popular elements of Roman domination in the ancient world.

Asesoría en diseño gráfico para el desarrollo de una marca colectiva para La Chamba, Tolima.

10 hojas : ilustraciones.