Friedreich's ataxia: clinical and molecular study of 25 Brazilian cases

INTRODUCTION: Friedreich's ataxia is a neurodegenerative disorder whose clinical diagnostic criteria for typical cases basically include: a) early age of onset (< 20 or 25 years), b) autosomal recessive inheritance, c) progressive ataxia of limbs and gait, and d) absence of lower limb tendon reflexes. METHODS: We studied the frequency and the size of expanded GAA and their influence on neurologic findings, age at onset, and disease progression in 25 Brazilian patients with clinical diagnosis of Friedreich's ataxia - 19 typical and 6 atypical - using a long-range PCR test. RESULTS: Abnormalities in cerebellar signs, in electrocardiography, and pes cavus occurred more frequently in typical cases; however, plantar response and speech were more frequently normal in this group when the both typical and atypical cases were compared. Homozygous GAA expansion repeats were detected in 17 cases (68%) - all typical cases. In 8 patients (32%) (6 atypical and 2 typical), no expansion was observed, ruling out the diagnosis of Friedreich's ataxia. In cases with GAA expansions, foot deformity, cardiac abnormalities, and some neurologic findings occurred more frequently; however, abnormalities in cranial nerves and in tomographic findings were detected less frequently than in patients without GAA expansions. DISCUSSION: Molecular analysis was imperative for the diagnosis of Friedreich's ataxia, not only for typical cases but also for atypical ones. There was no genotype-phenotype correlation. Diagnosis based only on clinical findings is limited; however, it aids in better screening for suspected cases that should be tested. Evaluation for vitamin E deficiency is recommended, especially in cases without GAA expansion.

Molecular tools in the diagnostic and epidemiology of infections caused by members of Mycobacterium avium Complex

Mycobacterium avium Complex (MAC) comprises microorganisms that affect a wide range of animals including humans. The most relevant are Mycobacterium avium subspecies hominissuis (Mah) with a high impact on public health affecting mainly immunocompromised individuals and Mycobacterium avium subspecies paratuberculosis (Map) causing paratuberculosis in animals with a high economic impact worldwide. In this work, we characterized 28 human and 67 porcine Mah isolates and evaluated the relationship among them by Multiple-Locus Variable number tandem repeat Analysis (MLVA). We concluded that Mah population presented a high genetic diversity and no correlations were inferred based on geographical origin, host or biological sample. For the first time in Portugal Map strains, from asymptomatic bovine faecal samples were isolated highlighting the need of more reliable and rapid diagnostic methods for Map direct detection. Therefore, we developed an IS900 nested real time PCR with high sensitivity and specificity associated with optimized DNA extraction methodologies for faecal and milk samples. We detected 83% of 155 faecal samples from goats, cattle and sheep, and 26% of 98 milk samples from cattle, positive for Map IS900 nested real time PCR. A novel SNPs (single nucleotide polymorphisms) assay to Map characterization based on a Whole Genome Sequencing analysis was developed to elucidate the genetic relationship between strains. Based on sequential detection of 14 SNPs and on a decision tree we were able to differentiate 14 phylogenetic groups with a higher discriminatory power compared to other typing methods. A pigmented Map strain was isolated and characterized evidencing for the first time to our knowledge the existence of pigmented Type C strains. With this work, we intended to improve the ante mortem direct molecular detection of Map, to conscientiously aware for the existence of Map animal infections widespread in Portugal and to contribute to the improvement of Map and Mah epidemiological studies.

Patologia e parâmetros oculares em doentes com infeção pelo VIH - Avaliação antes e após Terapêutica Antirretrovirica combinada

INTRODUÇÃO: As complicações oculares do VIH/SIDA são comuns e podem afetar qualquer tecido do olho. Na era da terapêutica antirretroviral combinada (TARc), houve uma redução drástica nas infeções oportunistas oculares. O impacto da terapêutica em outras alterações na visão de doentes VIH+ sem retinopatia infecciosa, como alterações na sensibilidade ao contraste (SC), visão cromática (VC) e nos campos visuais, sinal de uma disfunção microvascular retiniana, não está totalmente esclarecido. OBJETIVOS: Determinar os efeitos da TARc em parâmetros e patologia oculares de doentes VIH+ que vão iniciar ou reiniciar TARc MÉTODOS: Foi realizado um estudo observacional, longitudinal, transversal e prospetivo com a inclusão de 31 doentes VIH+ sem infeções oculares oportunistas, que iam iniciar ou reiniciar TARc. Após serem recolhidos alguns dados da história clínica, foi feita uma avaliação oftalmológica completa que incluiu: biomicroscopia do segmento anterior, acuidade visual com a escala de ETDRS, pressão intra-ocular com a tonometria de aplanação de Goldmann, SC com o CSV-1000E, VC com o Farnsworth- Munsell 100 e perimetria com o programa 24-2 do Octopus® 900. Após midríase farmacológica foram realizadas fotografias do segmento posterior, avaliação da espessura da camada de fibras nervosas (CFN) e macular com o OCT Stratus™ e avaliação da densidade do cristalino e do ângulo irido-corneano pelo Pentacam®. Cerca de 9 meses após o início da TARc, foi realizada uma segunda observação oftalmológica usando os mesmos métodos. Procuraram-se associações estatísticas entre vários parâmetros da infeção pelo VIH e a avaliação oftalmológica. RESULTADOS: Na primeira observação, encontraram-se 15 olhos (24%) com complicações anteriores do VIH, 10 olhos (16%) com retinopatia do VIH, 15 (24%) com alterações vasculares retinianas e 6 (10%) com defeitos na CFN; nenhuma destas alterações estava relacionada com o nível de linfócitos CD4+ ou carga viral. A SC, VC e perimetria estavam alteradas em 45%, 68% e 76% dos olhos, respetivamente. Encontrou-se uma correlação positiva entre valores mais elevados de linfócitos T CD4+ e melhor SC, sobretudo nos 6 e 12 ciclos por grau e no valor soma da SC (p<0,01). A avaliação pelo OCT revelou que os doentes com CFN fina tinham tendencialmente infeção mais antiga, níveis mais baixos de linfócitos CD4+ (p<0,05) e pior SC (p<0,05). Foi possível realizar segunda observação em 16 doentes (52%). Após 9 meses de TARc as alterações encontradas na primeira avaliação mantiveram-se, com exceção da retinopatia do VIH que regrediu. As alterações na SC, VC, perimetria e na espessura da CFN mantiveram-se; a densidade do cristalino não se alterou com a reconstituição imunitária após TARc. CONCLUSÕES: Foram detetadas alterações na avaliação oftalmológica de doentes VIH+ sem retinopatia infecciosa e que parecem estar relacionadas com a existência de microvasculopatia e disfunção neurorretiniana associada. A reconstituição imunitária com a TARc não parece levar a uma melhoria desta disfunção apesar da recuperação da imunidade para valores normais.

Detecção de Dirofilaria spp. em cães da Região Centro de Portugal

A dirofilariose é ainda hoje uma doença pouco conhecida da população em geral, mas com grande importância Médico-Veterinária e para os proprietários de canídeos domésticos de zonas endémicas. Doença que apresenta um carácter vectorial e zoonótico é causada pelos nemátodes do gênero Dirofilaria spp., e que têm como hospedeiros definitivos preferenciais os canídeos domésticos. A nível europeu a incidência desta doença tem vindo a aumentar, em especial os casos de doença provocados por Dirofilaria repens. Em Portugal, os conhecimentos epidemiológicos que temos desta parasitose resultam de um conjunto de estudos que esporadicamente têm sido realizados. Contudo, ainda existem algumas lacunas na informação existente sobre a situação actual da dirofilariose animal e humana no nosso país. O presente trabalho procurou actualizar a prevalência da doença canina na região centro de Portugal, tendo para isso sido efectuado um estudo epidemiológico, tendo-se recolhido amostras sanguíneas de 308 canideos domésticos que se encontravam alojados em canis municipais e privados. Após a análise das amostras, recorrendo a testes parasitológicos e imunológicos, foi possível detectar uma prevalência global 15,3% para Dirofilaria immitis. Apesar do crescente aumento europeu dos casos de dirofilariose por D. repens na Europa, este estudo tal como os que o antecederam aindam não conseguiu detectar este agente etiológico em Portugal. No presente trabalho, foi também usada uma abordagem molecular, o que permitiu detectar, pela primeira em Portugal, e em cães por D. immitis, a bactéria endossimbionte Wolbachia pipientis, importante na patologia de certas filárias.

Patologia em larvas de Ascia monuste monuste infectadas por Bacillus thuringiensis var. Kurstaki. I. Sintomatologia externa e interna

RESUMONo presente trabalho foram estudados os sintomas externos e internos pré-mortais em lagartas de Ascia monuste monuste infectadas com um produto (Dipel) à base de Bacillus thuringiensis var. kurstaki (Sorotipo H3a:3b). Tais sintomas são importantes nas avaliações das doenças de insetos no campo.Para os estudos da histopatologia foram analisadas as alterações ocorridas no tecido e c´leilas do epitélio intestinal a nível de microscópia ótica e eltrônica. Tais alterações resultam na morte das lagartas infectadas.

Patologia em larvas de Ascia monuste monuste infectadas por Bacillus thuringiensis var. Kurstaki. II. susceptibilidade e virulência

RESUMOFoi investigado, no presente trabalho, a patogenicidade de Bacillus thuringiensis var. kurstaki (sorotipo H3a: 3b) dos produtos comerciais Dipel e Bactospeine para lagartas de Ascia monuste monuste. Por meio de bioensaios, avaliou-se a alta susceptibilidade das lagartas dessa espécie ao bacilo, revelando a possibilidade do uso deste no controle de A. monuste monuste.

Biologia e controle microbiano de Urbanus acawoios (Williams, 1926) (Lepidoptera: Hesperiidae): II. patologia e susceptibilidade em larvas infectadas por Bacillus thuringiensis Var. kurstaki (H-3a:3b)

Devido à falta de informações sobre Urbanus acawoios (Williams, 1926) (Lepidoptera: Hesperiidae), e pelos danos severos por ele causados em árvores de Clitoria racemosa, o presente trabalho foi desenvolvido sob condições de laboratório para verificar a possibilidade de utilizar Bacillus thuringiensis var. kurstaki (H-3a:3b) como agente microbiano para o seu controle. O pH do intestino médio do hesperídeo mostrou ser bastante alcalino, variando de 8,4 a 9,2 (média de 8,7), indicando a possibilidade das larvas serem susceptíveis ao patógeno. Os ensaios confirmaram a alta susceptibilidade a dosagens equivalentes a 110 g / ha, resultando em tempos letais medianos (TL50) de 42,28, 37,18, 28,00 e 51,87 horas para larvas de 3o, 4°, início e final do 5º ínstares, respectivamente. Três outras dosagens (80, 150 e 280 g/h) foram aplicadas para larvas do 3º ínstar, resultando em TLs50 de 42,62, 30,77 e 30,06 horas, respectivamente. Descrições detalhadas sobre os sintomas externos nas larvas infectadas foram dadas. As alterações histológicas do intestino médio afetado pela d-endotoxina de B. thuringiensis foram descritas. Os resultados obtidos no presente trabalho revelam a grande possibilidade de controlar esta praga utilizando-se produtos e formulados à base desta bactéria.

The effects of solvent composition on the affinity of a peptide towards hair keratin: experimental and molecular dynamics data

The study of the interaction between hair filaments and formulations or peptides is of utmost importance in fields like cosmetic research. Keratin intermediate filaments structure is not fully described, limiting the molecular dynamics (MD) studies in this field although its high potential to improve the area. We developed a computational model of a truncated protofibril, simulated its behavior in alcoholic based formulations and with one peptide. The simulations showed a strong interaction between the benzyl alcohol molecules of the formulations and the model, leading to the disorganization of the keratin chains, which regress with the removal of the alcohol molecules. This behavior can explain the increase of peptide uptake in hair shafts evidenced in fluorescence microscopy pictures. The model developed is valid to computationally reproduce the interaction between hair and alcoholic formulations and provide a robust base for new MD studies about hair properties. It is shown that the MD simulations can improve hair cosmetic research, improving the uptake of a compound of interest.

On line pre-concentration for simultaneous determination of low molecular weight organic acids and inorganic anions in Amazonian river water samples employing ion chromatography with conductivity detection

An ion chromatography procedure, employing an IonPac AC15 concentrator column was used to investigate on line preconcentration for the simultaneous determination of inorganic anions and organic acids in river water. Twelve organic acids and nine inorganic anions were separated without any interference from other compounds and carry-over problems between samples. The injection loop was replaced by a Dionex AC15 concentrator column. The proposed procedure employed an auto-sampler that injected 1.5 ml of sample into a KOH mobile phase, generated by an Eluent Generator, at 1.5 mL min-1, which carried the sample to the chromatographic columns (one guard column, model AG-15, and one analytical column, model AS15, with 250 x 4mm i.d.). The gradient elution concentrations consisted of a 10.0 mmol l-1 KOH solution from 0 to 6.5 min, gradually increased to 45.0 mmol l-1 KOH at 21 min., and immediatelly returned and maintained at the initial concentrations until 24 min. of total run. The compounds were eluted and transported to an electro-conductivity detection cell that was attached to an electrochemical detector. The advantage of using concentrator column was the capability of performing routine simultaneous determinations for ions from 0.01 to 1.0 mg l-1 organic acids (acetate, propionic acid, formic acid, butyric acid, glycolic acid, pyruvate, tartaric acid, phthalic acid, methanesulfonic acid, valeric acid, maleic acid, oxalic acid, chlorate and citric acid) and 0.01 to 5.0 mg l-1 inorganic anions (fluoride, chloride, nitrite, nitrate, bromide, sulfate and phosphate), without extensive sample pretreatment and with an analysis time of only 24 minutes.

A Gß protein and the TupA Co-Regulator bind to protein kinase A Tpk2 to act as antagonistic molecular switches of fungal morphological changes

A Gß protein and the TupA Co-Regulator Bind to Protein Kinase A Tpk2 to Act as Antagonistic Molecular Switches of Fungal Morphological Changes

To be or not to be a pseudogene: a molecular epidemiological approach to the mclx genes and its impact in tuberculosis

Tuberculosis presents a myriad of symptoms, progression routes and propagation patterns not yet fully understood. Whereas for a long time research has focused solely on the patient immunity and overall susceptibility, it is nowadays widely accepted that the genetic diversity of its causative agent, Mycobacterium tuberculosis, plays a key role in this dynamic. This study focuses on a particular family of genes, the mclxs (Mycobacterium cyclase/LuxR-like genes), which codify for a particular and nearly mycobacterial-exclusive combination of protein domains. mclxs genes were found to be pseudogenized by frameshift-causing insertion(s)/deletion(s) in a considerable number of M. tuberculosis complex strains and clinical isolates. To discern the functional implications of the pseudogenization, we have analysed the pattern of frameshift-causing mutations in a group of M. tuberculosis isolates while taking into account their microbial-, patient- and disease-related traits. Our logistic regression-based analyses have revealed disparate effects associated with the transcriptional inactivation of two mclx genes. In fact, mclx2 (Rv1358) pseudogenization appears to be primarily driven by the microbial phylogenetic background, being mainly related to the Euro-American (EAm) lineage; on the other hand, mclx3 (Rv2488c) presents a higher tendency for pseudogenization among isolates from patients born on the Western Pacific area, and from isolates causing extra-pulmonary infections. These results contribute to the overall knowledge on the biology of M. tuberculosis infection, whereas at the same time launch the necessary basis for the functional assessment of these so far overlooked genes.

Widespread environmental contamination with Mycobacterium tuberculosis complex revealed by a molecular detection protocol

Environmental contamination with Mycobacterium tuberculosis complex (MTC) has been considered crucial for bovine tuberculosis persistence in multi-host-pathogen systems. However, MTC contamination has been difficult to detect due to methodological issues. In an attempt to overcome this limitation we developed an improved protocol for the detection of MTC DNA. MTC DNA concentration was estimated by the Most Probable Number (MPN) method. Making use of this protocol we showed that MTC contamination is widespread in different types of environmental samples from the Iberian Peninsula, which supports indirect transmission as a contributing mechanism for the maintenance of bovine tuberculosis in this multi-host-pathogen system. The proportion of MTC DNA positive samples was higher in the bovine tuberculosis-infected than in presumed negative area (0.32 and 0.18, respectively). Detection varied with the type of environmental sample and was more frequent in sediment from dams and less frequent in water also from dams (0.22 and 0.05, respectively). The proportion of MTC-positive samples was significantly higher in spring (p<0.001), but MTC DNA concentration per sample was higher in autumn and lower in summer. The average MTC DNA concentration in positive samples was 0.82 MPN/g (CI95 0.70-0.98 MPN/g). We were further able to amplify a DNA sequence specific of Mycobacterium bovis/caprae in 4 environmental samples from the bTB-infected area.

Molecular regulation of flowering induction in Quercus suber

Dissertação de mestrado em Plant Molecular Biology, Biotechnology and Bioentrepeneurship

The influence of kaolin application on key metabolic pathways associated with grape berry quality: a molecular and biochemical analysis

Dissertação de mestrado em Biologia Molecular, Biotecnologia e Bioempreendedorismo em Plantas