[Pérouse. Rocca Paolina, Porta Marzia]

Référence bibliographique : Weigert, 341

A partial ordering of knots and links through diagrammatic unknotting

In this paper we de. ne a partial ordering of knots and links using a special property derived from their minimal diagrams. A link K' is called a predecessor of a link K if Cr(K') < Cr(K) and a diagram of K' can be obtained from a minimal diagram D of K by a single crossing change. In such a case, we say that K' < K. We investigate the sets of links that can be obtained by single crossing changes over all minimal diagrams of a given link. We show that these sets are specific for different links and permit partial ordering of all links. Some interesting results are presented and many questions are raised.

Iron acquisition with the natural siderophore enantiomers pyochelin and enantio-pyochelin in Pseudomonas species.

The bacterial siderophore pyochelin is composed of salicylate and two cysteine-derived heterocycles, the second of which is modified by reduction and N-methylation during biosynthesis. In Pseudomonas aeruginosa, the first cysteine residue is converted to its D-isoform during thiazoline ring formation, whereas the second cysteine remains in its L-configuration. Stereochemistry is opposite in the Pseudomonas fluorescens siderophore enantio-pyochelin, in which the first ring originates from L-cysteine and the second ring from D-cysteine. Both siderophores promote growth of the producer organism during iron limitation and induce the expression of their biosynthesis genes by activating the transcriptional AraC-type regulator PchR. However, neither siderophore is functional as an iron carrier or as a transcriptional inducer in the other species, demonstrating that both processes are highly stereospecific. Stereospecificity of pyochelin/enantio-pyochelin-mediated iron uptake is ensured at two levels: (i) by the outer membrane siderophore receptors and (ii) by the cytosolic PchR regulators.

Quantification of Myocardial Perfusion Using 13N-ammonia PET: a Cross-Comparison Study on Analysis Software Packages - Carimas, PMOD and FlowQuant

Aim. Several software packages (SWP) and models have been released for quantification of myocardial perfusion (MP). Although they all are validated against something, the question remains how well their values agree. The present analysis focused on cross-comparison of three SWP for MP quantification of 13N-ammonia PET studies. Materials & Methods. 48 rest and stress MP 13N-ammonia PET studies of hypertrophic cardiomyopathy (HCM) patients (Sciagrà et al., 2009) were analysed with three SW packages - Carimas, PMOD, and FlowQuant - by three observers blinded to the results of each other. All SWP implement the one-tissue-compartment model (1TCM, DeGrado et al. 1996), and first two - the two-tissue-compartment model (2TCM, Hutchins et al. 1990) as well. Linear mixed model for the repeated measures was fitted to the data. Where appropriate we used Bland-Altman plots as well. The reproducibility was assessed on global, regional and segmental levels. Intraclass correlation coefficients (ICC), differences between the SWPs and between models were obtained. ICC≥0.75 indicated excellent reproducibility, 0.4≤ICC<0.75 indicated fair to good reproducibility, ICC<0.4 - poor reproducibility (Rosner, 2010). Results. When 1TCM MP values were compared, the SW agreement on global and regional levels was excellent, except for Carimas vs. PMOD at RCA: ICC=0.715 and for PMOD vs. FlowQuant at LCX:ICC=0.745 which were good. In segmental analysis in five segments: 7,12,13, 16, and 17 the agreement between all SWP was excellent; in the remaining 12 segments the agreement varied between the compared SWP. Carimas showed excellent agreement with FlowQuant in 13 segments and good in four - 1, 5, 6, 11: 0.687≤ICCs≤0.73; Carimas had excellent agreement with PMOD in 11 segments, good in five_4, 9, 10, 14, 15: 0.682≤ICCs≤0.737, and poor in segment 3: ICC=0.341. PMOD had excellent agreement with FlowQuant in eight segments and substantial-to-good in nine_1, 2, 3, 5, 6,8-11: 0.585≤ICCs≤0.738. Agreement between Carimas and PMOD for 2TCM was good at a global level: ICC=0.745, excellent at LCX (0.780) and RCA (0.774), good at LAD (0.662); agreement was excellent for ten segments, fair-to-substantial for segments 2, 3, 8, 14, 15 (0.431≤ICCs≤0.681), poor for segments 4 (0.384) and 17 (0.278). Conclusions. The three SWP used by different operators to analyse 13N-ammonia PET MP studies provide results that agree well at a global level, regional levels, and mostly well even at a segmental level. Agreement is better for 1TCM. Poor agreement at segments 4 and 17 for 2TCM needs further clarification.

Endocardite infectieuse: mise au point [Infective endocarditis: update]

The pathogenesis of infective endocarditis (IE) is being dissected at the molecular level, which should help redefine new preventive and therapeutic strategies against IE. In spite of improving health care, the incidence of IE has not decreased over the last decades. While classical predisposing conditions such as rheumatic heart disease were being eradicated, new features of IE have emerged. These include IE in intravenous drug users, IE in elderly patients with sclerotic valve disease, prosthetic valve IE and nosocomial IE. The epidemiology, pathogenesis, diagnosis, prevention and treatment of IE are being reviewed in this article.

Success rate of airway management by residents in a pre-hospital emergency setting: a retrospective study

Abstract Objective: The objective of this retrospective study over a 5-year period was to assess the success rate of airway management by residents. Criteria of successful airway management were both the adherence to a standardized protocol of pre-hospital airway.

Le Roman de Renart

F. 1-48. Le Roman de Renart. Le manuscrit, qui a été doté du sigle O dans les différentes éditions, est incomplet de la fin et mixte, proposant une structure relativement inédite. Il a récemment fait l’objet d’une édition critique par Aurélie Barre : Édition critique et littéraire du manuscrit O du « Roman de Renart » ( f. fr. 12583), doctorat, Université Lyon III, 2005. F. 1a-14b. Branche I.F. 1a-7e. [Branche Ia : « Le jugement de Renart »]. « Pierres qui son enging et s’art / Mist es vers faire de Renart…-… Tant qu’il [re]fu en sa santé / Com il avoit devant esté ». – F. 7e-10b. [Branche Ib : « Le Siège de Maupertuis »]. « Messires Nobles l’empereres / Vint au chastel ou Renart ere …-… Et Renart ainsi s’en eschape, / Des or gart bien chascun sa chape ! ». – F. 10b-14b. [Branche Ic : « Renart teinturier, Renart jongleur »]. « Li rois a fait son ban crier, / Par tout plevir et afier …-… Puis fu Renart lonc tens en mue ; / Ne va, ne vient, ne se remue » (éd. Barre, p.117-233, v. 1-3217). . F. 14b-20bBranche II. F. 14b-20b. [Branche II : « Le duel judiciaire »]. « Messires Nobles li lions / O lui avoit toz ses barons …-… Et autre redirai aprés, / A itant de cestui vos lés » (éd. Barre, p. 235-289, v. 1-1522). F. 20b-25c. Branche III.F. 20b-22a. [Branche IIIa : « Renart et Chantecler »]. « Seignors, oï avez maint conte, / Que maint contierres vos aconte …-… Dou coc qui li est eschapez, / Quant il ne s’en est saoulez ». – F. 22a-22f. [Branche IIIb : « Renart et la mésange »]. « Que que cil se plaint et demente, / Atant es vos une mesenge …-… Assez a grant travail eü / de ce dont li est mescheü ». – F. 22f-23c. [Branche IIIc. « Renart et Tibert »]. « Que qu’il se plaint de s’aventure, / Qui li avient et pesme et dure …-… Tornez s’en est a mout grant paine …-… Si com aventure le maine ». – F. 23c-24e. [Branche IIId : « Renart et l’andouille »]. «Renart qui mout sot de treslüe, / Et qui mout ot grant fain eüe …-… Esfondree ert entr’eus la guerre, / Mes ne velt trive ne pes querre ». – F. 24e-25c. [Branche IIIe : « Tibert et les deux prêtres »]. « Thibert li chaz, dont je a dit, / Doute Renart assez petit …-… Qui touz nos a enfantosmez : / A paine en sui vis eschapez ! » (éd. Barre, p. 291-340, v. 1-1265). F. 25c-27d. Branche IV. F. 25c-26a. [Branche IVa : « Renart et Tiercelin »]. « Entre .II. mons, en une plangne / Tout droit au pié d’une montaigne …-… Fuiant s’en va les sauz menuz : / Ses anemis a confonduz ». – F. 26a-27d. [Branche IVb : « Le viol d’Hersent »]. « Cis plaiz fu ainsi deffinez / Et Renars s’est acheminez …-… Et est venuz a sa mesnie / Qui soz la roche est entasnie » (éd. Barre, p. 341-359, v. 1-524). F. 27d-29d. Branche V. [« Renart et les anguilles »]. « Seignors, ce fu en cest termine / Que li douz tens d’esté decline …-…Que de Renart se vengera / Ne jamés jor ne l’amera » (éd. Barre, p. 361-378, v. 1-514). F. 29d-31e. Branche VI. [« Le puits »]. « Prime covient tel chose dire / Dont je vos puisse faire rire …-… Et il le puet prandre en sa marge, / Sachiez qu’i li fera domage ! » (éd. Barre, p. 379-396, v. 1-537).. 31e-39c. Branche VII. F. 31e-32e. [Branche VIIa : « Le jambon enlevé »]. « [U]n jour issit hors de la lande / Isengrins por querre viande …-… .XV. jours va a grant baudour, / Onques Renars n’i fist sejour ». – F. 32c-32e. [Branche VIIb : « Renart et le grillon »]. « Renart s’en va tout son chemin. / Or veut (en) engignier Isengrin …-… Tornez s’en est grant aleüre / Et vet aillors querre droiture ». – F. 32e-36e. [Branche VIIc : « L’Escondit »]. « Atant s’apense d’une chose / Dont il sa fame sovent chose …-…Tant defoulé et tant batu / Qu’a Malpertuis l’ont enbatu ». – F. 36e-39c. [Branche VIId : « La confession de Renart »]. « Foux est qui croit sa male pense : / Mout remaint de ce que fox panse …-…L’escofle lor donne a mengier, / Qu’il en avoient grant mestier (éd. Barre, p. 397-470, v. 1-1960). F. 36c-48e. Branche VIII. [« Renart et Liétart »]. « Uns prestres de la Croiz en Brie, / Que Damediex doint bone vie …-… Ou au chiés ou a la parclose, / Qui n’est aüsés de la chose » (éd. Barre, p. 471-554, v. 1-2470). F. 48e. Branche IX (v. 1-86). [« Les Vêpres de Tibert »]. « Oiez une novele estoire / Qui bien doit estre en mémoire …-… Jel conterai a Hameline, / La foi et la reconnoissance… » (éd. Barre, p. 555-557, v. 1-85).

Detection and chemical profiling of medicine counterfeits by Raman spectroscopy and chemometrics

Raman spectroscopy combined with chemometrics has recently become a widespread technique for the analysis of pharmaceutical solid forms. The application presented in this paper is the investigation of counterfeit medicines. This increasingly serious issue involves networks that are an integral part of industrialized organized crime. Efficient analytical tools are consequently required to fight against it. Quick and reliable authentication means are needed to allow the deployment of measures from the company and the authorities. For this purpose a method in two steps has been implemented here. The first step enables the identification of pharmaceutical tablets and capsules and the detection of their counterfeits. A nonlinear classification method, the Support Vector Machines (SVM), is computed together with a correlation with the database and the detection of Active Pharmaceutical Ingredient (API) peaks in the suspect product. If a counterfeit is detected, the second step allows its chemical profiling among former counterfeits in a forensic intelligence perspective. For this second step a classification based on Principal Component Analysis (PCA) and correlation distance measurements is applied to the Raman spectra of the counterfeits.

Altered thymic selection by overexpressing cellular FLICE inhibitory protein in T cells causes lupus-like syndrome in a BALB/c but not C57BL/6 strain.

The cellular FLICE inhibitory protein (c-FLIP) is an endogenous inhibitor of the caspase-8 proapoptotic signaling pathway downstream of death receptors. Recent evidence indicates that the long form of c-FLIP (c-FLIP(L)) is required for proliferation and effector T-cell development. However, the role of c-FLIP(L) in triggering autoimmunity has not been carefully analyzed. We now report that c-FLIP(L) transgenic (Tg) mice develop splenomegaly, lymphadenopathy, multiorgan infiltration, high titers of auto-antibodies, and proliferative glomerulonephritis with immune complex deposition in a strain-dependent manner. The development of autoimmunity requires CD4(+) T cells and may result from impaired thymic selection. At the molecular level, c-FLIP(L) overexpression inhibits the zeta chain-associated protein tyrosine kinase of 70 kDa (ZAP-70) activation, thus impairing the signaling pathway derived from ZAP-70 required for thymic selection. Therefore, we have identified c-FLIP(L) as a susceptibility factor under the influence of epistatic modifiers for the development of autoimmunity.

Novel method to estimate the phenotypic variation explained by genome-wide association studies reveals large fraction of the missing heritability.

Genome-wide association studies (GWAS) are conducted with the promise to discover novel genetic variants associated with diverse traits. For most traits, associated markers individually explain just a modest fraction of the phenotypic variation, but their number can well be in the hundreds. We developed a maximum likelihood method that allows us to infer the distribution of associated variants even when many of them were missed by chance. Compared to previous approaches, the novelty of our method is that it (a) does not require having an independent (unbiased) estimate of the effect sizes; (b) makes use of the complete distribution of P-values while allowing for the false discovery rate; (c) takes into account allelic heterogeneity and the SNP pruning strategy. We applied our method to the latest GWAS meta-analysis results of the GIANT consortium. It revealed that while the explained variance of genome-wide (GW) significant SNPs is around 1% for waist-hip ratio (WHR), the observed P-values provide evidence for the existence of variants explaining 10% (CI=[8.5-11.5%]) of the phenotypic variance in total. Similarly, the total explained variance likely to exist for height is estimated to be 29% (CI=[28-30%]), three times higher than what the observed GW significant SNPs give rise to. This methodology also enables us to predict the benefit of future GWA studies that aim to reveal more associated genetic markers via increased sample size.

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

To understand the biology and evolution of ruminants, the cattle genome was sequenced to about sevenfold coverage. The cattle genome contains a minimum of 22,000 genes, with a core set of 14,345 orthologs shared among seven mammalian species of which 1217 are absent or undetected in noneutherian (marsupial or monotreme) genomes. Cattle-specific evolutionary breakpoint regions in chromosomes have a higher density of segmental duplications, enrichment of repetitive elements, and species-specific variations in genes associated with lactation and immune responsiveness. Genes involved in metabolism are generally highly conserved, although five metabolic genes are deleted or extensively diverged from their human orthologs. The cattle genome sequence thus provides a resource for understanding mammalian evolution and accelerating livestock genetic improvement for milk and meat production.

Pronóstico y tratamiento de la boca seca. Revisión sistemática

No existen protocolos claramente establecidos para el tratamiento de la boca seca. El objetivo de este trabajo es realizar una revisión sistemática de la literatura médica de los últimos 10 años. Hemos utilizado las palabras: «dry mouth», «prognosis», «treatment» y «dentistry». En una primera búsqueda hemos encontrado 1.450 entradas. Con la restricción «clinical trials OR randomized controlled trial OR systemic reviews» se han reducido a 522, de las que 145 eran metaanálisis y revisiones sistemáticas. Se han eliminado las que no eran pertinentes al tema y han quedado reducidas a 53. Posteriormente se descartaron 24 (8 no pertinentes, 7 revisiones y 9 opiniones personales). De los 29 artículos analizados, 15 son ensayos clínicos controlados, 2 ensayos no controlados, 4 estudios observacionales, 2 revisiones sistemáticas y 5 revisiones. Los enfermos mejor estudiados son los pacientes con síndrome de Sjögren y los pacientes irradiados. El tratamiento se centra en el etiológico, preventivo, sintomático, de estimulación salival local y sistémicos. Podemos concluir que el tratamiento debe ser individualizado, pudiéndose aplicar sustitutos salivales y diferentes técnicas de estimulación mecánica. There are no clearly established protocols for the treatment of dry mouth. The aim of this paper is a systematic review of the literature of the past 10 years using the words «dry mouth», «prognosis», «treatment» and «dentistry». The initial search found 1,450 entries and within the restriction «clinical trials OR randomized controlled trial OR systemic reviews» it has been reduced to 522, which 145 were meta-analysis and systematic reviews. Papers not relevant to the issue were removed reducing the entries to 53. Twenty-four were dismissed (8 irrelevant, 7 reviews without adequate information and 9 personal opinions). Of the 29 items tested, 15 were controlled trials, 2 uncontrolled trials, 4 observational studies, 2 systematic reviews and 5 non systematic reviews. The most studied patients were Sjögren's syndrome and the irradiated patients. Treatments are focused on the etiology, prevention, symptomatic, local salivary stimulation and systemic treatments. It can be concluded that treatment must be individualized, salivary substitutes and mechanical stimulation techniques can be applied.

Maintenance requirement and deposition efficiency of lysine in pigs

The objective of this work was to determine the maintenance requirement and the deposition efficiency of lysine in growing pigs. It was used the incomplete changeover experimental design, with replicates over time. Twelve castrated pigs with average body weight (BW) of 52±2 kg were kept in metabolism crates with a controlled temperature of 22ºC. The diets were formulated to supply 30, 50, 60, and 70% of the expected requirements of standardized lysine, and provided at 2.6 times the energy requirements for maintenance. The trial lasted 24 days and was divided into two periods of 12 days: seven days for animal adaptation to the diet and five days for sample collection. The increasing content of lysine in the diet did not affect dry matter intake of the pigs. The amount of nitrogen excreted was 47% of the nitrogen intake, of which 35% was excreted through feces and 65% through urine. The estimated endogenous losses of lysine were 36.4 mg kg-1 BW0.75. The maintenance requirement of lysine for pigs weighing around 50 kg is 40.4 mg kg-1 BW0.75, and the deposition efficiency of lysine is 90%.