DNA topology: feeling the pulse of a topoisomerase.

The action of individual type II DNA topoisomerases has been followed in real time by observing the elastic response of single DNA molecules to sequential strand passage events. Micromanipulation methods provide a complementary approach to biochemical studies for investigating the mechanism of DNA topoisomerases.

Reconfigurable beams with arbitrary polarization and shape distributions at a given plane

Methods for generating beams with arbitrary polarization based on the use of liquid crystal displays have recently attracted interest from a wide range of sources. In this paper we present a technique for generating beams with arbitrary polarization and shape distributions at a given plane using a Mach-Zehnder setup. The transverse components of the incident beam are processed independently by means of spatial light modulators placed in each path of the interferometer. The modulators display computer generated holograms designed to dynamically encode any amplitude value and polarization state for each point of the wavefront in a given plane. The steps required to design such beams are described in detail. Several beams performing different polarization and intensity landscapes have been experimentally implemented. The results obtained demonstrate the capability of the proposed technique to tailor the amplitude and polarization of the beam simultaneously.

Análise espaço-temporal de componentes do balanço hídrico em um Latossolo

O monitoramento das variáveis que constituem a equação do balanço hídrico do solo em campo cultivado é necessário para avaliar com confiabilidade os períodos de déficits hídricos durante o ciclo das culturas, manejar a irrigação e quantificar perdas de nutrientes por lixiviação. Os componentes da equação do balanço hídrico podem variar no espaço e no tempo, e o estudo da estabilidade temporal da variabilidade espacial desses componentes é essencial para determinar quais são os pontos de observação no campo (locais) para monitorar a água do solo com precisão e esforço amostral reduzido. Assim, os objetivos deste trabalho foram avaliar os componentes do balanço da água (especificamente a variação de armazenamento de água do solo, drenagem interna e evapotranspiração real) de plantas de milho em um Latossolo Vermelho-Amarelo e analisar a variabilidade espacial e temporal, por meio da técnica de estabilidade temporal. O estudo foi realizado em uma área do Campus da ESALQ/USP, município de Piracicaba, Estado de São Paulo, Brasil. O relevo da área experimental, que tem 1.500 m², é plano. Nessa área foram instalados 60 tubos de alumínio para acesso de uma sonda de nêutrons e 120 tensiômetros com manômetro de mercúrio (60 na profundidade de 0,75 m e 60 na profundidade de 0,85 m). Isso permitiu estimar a densidade de fluxo de água do solo na profundidade de 0,80 m por meio da equação de Darcy-Buckingham e o armazenamento de água na camada de 0,0-0,80 m, ao longo do ciclo da cultura. A precipitação pluvial foi medida por meio de um pluviômetro instalado no centro da área experimental, e a evaporação real foi considerada como desconhecida da equação do balanço hídrico. A pesquisa foi realizada dividindo o ciclo de cultivo em 13 períodos (P1 a P13). O uso da estatística descritiva foi feito para evidenciar a variação do comportamento dos dados após a remoção dos pontos discrepantes, que representaram entre 0,0 e 3,9 % dos pontos amostrais por período. O uso da estatística descritiva foi útil por ter apresentado a mudança no comportamento dos dados, após a retirada de valores discrepantes e extremos em alguns períodos. A técnica da estabilidade temporal é viável para avaliação do balanço hídrico no espaço e no tempo. Os coeficientes de correlação de Spearman entre os períodos indicaram estabilidade temporal para a armazenagem da água independentemente do teor de umidade do solo, mas não expressaram confiabilidade para a avaliação da drenagem interna e a evapotranspiração real da cultura. A evapotranspiração oscilou ao longo do ciclo da cultura mantendo-se praticamente constante nos períodos P5 a P9, em que houve maior desenvolvimento vegetativo das plantas.

Magnetoelasticity and magnetoresistance in Cu-Al-Mn shape-memory alloys

We study the effect of a magnetic field on the martensitic transition of a Cu-Al-Mn shape-memory alloy. The martensitic transition has been studied through resistance measurements under applied magnetic fields ranging from 0 to 50 kOe. Negative magnetoresistance showing an almost linear dependence with the square of the magnetization has been observed. This magnetoresistive effect is associated with the existence of small ferromagnetic Mn-clusters. Its strength and thermal dependence is different in both phases. The martensitic transition temperature is slightly increased and its spread in temperature significantly reduced upon increasing the field. These results show the existence of magnetoelastic coupling, which favors the nucleation of those martensitic variants with the easy magnetization axis aligned with the field.

Gravitational wave pulse and soliton wave collision

We study the collision of a gravitational wave pulse and a soliton wave on a spatially homogeneous background. This collision is described by an exact solution of Einsteins equations in a vacuum which is generated from a nondiagonal seed by means of a soliton transformation. The effect produced by the soliton on the amplitude and polarization of the wave is considered.

Caracterização das chuvas erosivas em Urussanga, SC, com relação ao padrão de distribuição temporal

O estudo da distribuição temporal de chuvas é realizado com objetivo de caracterizar o padrão de chuva mais frequente. O conhecimento das características físicas das chuvas com relação aos padrões de precipitação permite realizar modelagem matemática de eventos hidrológicos em condições mais próximas às condições reais. O objetivo deste trabalho foi caracterizar as chuvas erosivas em Urussanga, SC, com relação aos padrões hidrológicos de distribuição temporal. Foram usados os pluviogramas da estação meteorológica de Urussanga (latitude 28,31º S, longitude 49,19º W e altitude de 49 m) relativos ao período de outubro de 1980 a março de 2012. As chuvas erosivas foram classificadas em padrões avançado, intermediário e atrasado, se a maior intensidade ocorre no terço de duração inicial, intermediário e final, respectivamente. Foram determinadas as características de altura pluvial, duração da chuva, energia cinética, intensidade máxima em 30 min, erosividade e frequência de chuvas mensais de cada padrão de chuva. Verificou-se a ocorrência de 1.221 chuvas erosivas, das quais 651 com perfil avançado; 416, intermediário; e 154, atrasado. A duração média das chuvas erosivas é de 14,4 h. A média total de intensidade média para as chuvas erosivas foi de 17,4 mm h-1. A maior concentração de chuvas (32,9 %) foi observada no intervalo de duração de 6 a 12 h. Para duração inferior a 18 h, ocorre maior frequência de chuvas do padrão avançado; já para acima de 18 h, as frequências de chuvas do padrão avançado e intermediário são semelhantes.

Adaptive tracking of EEG oscillations.

Neuronal oscillations are an important aspect of EEG recordings. These oscillations are supposed to be involved in several cognitive mechanisms. For instance, oscillatory activity is considered a key component for the top-down control of perception. However, measuring this activity and its influence requires precise extraction of frequency components. This processing is not straightforward. Particularly, difficulties with extracting oscillations arise due to their time-varying characteristics. Moreover, when phase information is needed, it is of the utmost importance to extract narrow-band signals. This paper presents a novel method using adaptive filters for tracking and extracting these time-varying oscillations. This scheme is designed to maximize the oscillatory behavior at the output of the adaptive filter. It is then capable of tracking an oscillation and describing its temporal evolution even during low amplitude time segments. Moreover, this method can be extended in order to track several oscillations simultaneously and to use multiple signals. These two extensions are particularly relevant in the framework of EEG data processing, where oscillations are active at the same time in different frequency bands and signals are recorded with multiple sensors. The presented tracking scheme is first tested with synthetic signals in order to highlight its capabilities. Then it is applied to data recorded during a visual shape discrimination experiment for assessing its usefulness during EEG processing and in detecting functionally relevant changes. This method is an interesting additional processing step for providing alternative information compared to classical time-frequency analyses and for improving the detection and analysis of cross-frequency couplings.

Synchronization in a lattice model of pulse-coupled oscillators

We analyze the collective behavior of a lattice model of pulse-coupled oscillators. By means of computer simulations we find the relation between the intrinsic dynamics of each member of the population and their mutual interactions that ensures, in a general context, the existence of a fully synchronized regime. This condition turns out to be the same as that obtained for the globally coupled population. When the condition is not completely satisfied we find different spatial structures. This also gives some hints about self-organized criticality.

Pulse wave analysis aortic pressure . distole should also be considered

La rigidité anormalement haute des artères à grande conductance est un marqueur de l'augmentation du risque cardiovasculaire et est typiquement retrouvée chez les patients diabétiques ou hypertendus. Ces vaisseaux deviennent plus rigides avec l'âge, expliquant la haute prévalence d'hypertension systolique chez les personnes âgées. Cette rigidification agit sur la pression sanguine de plusieurs façons. Notamment la fonction windkessel est gênée, menant à l'augmentation de la pression systolique et de la pression puisée, la diminution de la pression diastolique, et ainsi à l'augmentation de la postcharge ventriculaire gauche associée à une probable diminution de la perfusion coronarienne. De plus, la propagation des ondes de pression le long de l'arbre vasculaire est accélérée, de sorte que les ondes réfléchies générées au site de décalage d'impédance atteignent l'aorte ascendante plus tôt par rapport au début de l'éjection ventriculaire, aboutissant à une augmentation de la pression systolique centrale, ce qui n'arriverait pas en présence de vaisseaux moins rigides. Dans ce cas, au contraire, les ondes de pression antérogrades et réfléchies voyages plus lentement, de sorte que les ondes de réflexion tendent à atteindre l'aorte centrale une fois l'éjection terminée, augmentant la pression diastolique et contribuant à la perfusion coronarienne. La tonométrie d'applanation est une méthode non invasive permettant l'évaluation de la forme de l'onde de pression au niveau l'aorte ascendante, basée sur l'enregistrement du pouls périphérique, au niveau radial dans notre étude. Nous pouvons dériver à partir de cette méthode un index d'augmentation systolique (sAIX) qui révèle quel pourcentage de la pression centrale est du aux ondes réfléchies. Plusieurs études ont montré que cet index est corrélé à d'autres mesures de la rigidité artérielle comme la vitesse de l'onde de pouls, qu'il augmente avec l'âge et avec les facteurs de risques cardiovasculaires, et qu'il est capable de préciser le pronostic cardiovasculaire. En revanche, peu d'attention a été portée à l'augmentation de la pression centrale diastolique due aux ondes réfléchies (dAIX). Nous proposons donc de mesurer cet index par un procédé d'analyse développé dans notre laboratoire, et ce dans la même unité que l'index systolique. Etant donné que les modifications de la paroi artérielle modulent d'une part la vitesse de l'onde de pouls (PWV) et d'autre part le temps de voyage aller-retour des ondes de pression réfléchies aux sites de réflexion, toute augmentation de la quantité d'énergie réfléchie atteignant l'aorte pendant la systole devrait être associée à une diminution de l'énergie arrivant au même point pendant la diastole. Notre étude propose de mesurer ces deux index, ainsi que d'étudier la relation de l'index d'augmentation diastolique (dAIX) avec la vitesse de propagation de l'onde de pouls (PWV) et avec le rythme cardiaque (HR), ce dernier étant connu pour influencer l'index d'augmentation systolique (sAIX) . L'influence de la position couchée et assise est aussi étudiée. Les mesures de la PWV et des sAIX et dAIX est réalisée chez 48 hommes et 45 femmes âgées de 18 à 70 ans, classés en 3 groupes d'âges. Les résultats montrent qu'en fonction de l'âge, le genre et la position du corps, il y a une relation inverse entre sAIX et dAIX. Lorsque PWV et HR sont ajoutés comme covariables à un modèle de prédiction comprenant l'âge, le genre et la position du corps comme facteurs principaux, sAIX est directement lié à PWV (p<0.0001) et inversement lié à HR (p<0.0001). Avec la même analyse, dAIX est inversement lié à PWV (p<0.0001) et indépendant du rythme cardiaque (p=0.52). En conclusion, l'index d'augmentation diastolique est lié à la rigidité vasculaire au même degré que l'index d'augmentation systolique, alors qu'il est affranchi de l'effet confondant du rythme cardiaque. La quantification de l'augmentation de la pression aortique diastolique due aux ondes réfléchies pourrait être une partie utile de l'analyse de l'onde de pouls.

Mechanisms of synchronization and pattern formation in a lattice of pulse-coupled oscillators

We analyze the physical mechanisms leading either to synchronization or to the formation of spatiotemporal patterns in a lattice model of pulse-coupled oscillators. In order to make the system tractable from a mathematical point of view we study a one-dimensional ring with unidirectional coupling. In such a situation, exact results concerning the stability of the fixed of the dynamic evolution of the lattice can be obtained. Furthermore, we show that this stability is the responsible for the different behaviors.

Do riverine barriers, history or introgression shape the genetic structuring of a common shrew (Sorex araneus) population?

The common shrew (Sorex araneus) is subdivided into numerous chromosome races. The Valais and Cordon chromosome races meet and hybridize at a mountain river in Les Houches (French Alps). Significant genetic structuring was recently reported among populations found on the Valais side of this hybrid zone. In this paper, a phylogenetic analysis and partial Mantel tests are used to investigate the patterns and causes of this structuring. A total of 185 shrews were trapped at 12 localities. All individuals were typed for nine microsatellite loci. Although several mountain rivers are found in the study area, riverine barriers do not have a significant influence on gene flow. Partial Mantel tests show that our result is caused by the influence of the hybrid zone with the Cordon race. The geographical patterns of this structuring are discussed in the context of the contact zone, which appears to extend up to a group of two rivers. The glacier they originate from is known to have cut the Arve valley as recently as 1818. The recent history of this glacier, its moraine and possibly rivers, may therefore be linked to the history of this hybrid zone.

Exact temporal evolution for some non-linear diffusion process

Exact solutions to FokkerPlanck equations with nonlinear drift are considered. Applications of these exact solutions for concrete models are studied. We arrive at the conclusion that for certain drifts we obtain divergent moments (and infinite relaxation time) if the diffusion process can be extended without any obstacle to the whole space. But if we introduce a potential barrier that limits the diffusion process, moments converge with a finite relaxation time.