Development of computational and experimental methods for biomass composition and evaluation of its impact in genome-scale models prediction

The use of genome-scale metabolic models has been rapidly increasing in fields such as metabolic engineering. An important part of a metabolic model is the biomass equation since this reaction will ultimately determine the predictive capacity of the model in terms of essentiality and flux distributions. Thus, in order to obtain a reliable metabolic model the biomass precursors and their coefficients must be as precise as possible. Ideally, determination of the biomass composition would be performed experimentally, but when no experimental data are available this is established by approximation to closely related organisms. Computational methods however, can extract some information from the genome such as amino acid and nucleotide compositions. The main objectives of this study were to compare the biomass composition of several organisms and to evaluate how biomass precursor coefficients affected the predictability of several genome-scale metabolic models by comparing predictions with experimental data in literature. For that, the biomass macromolecular composition was experimentally determined and the amino acid composition was both experimentally and computationally estimated for several organisms. Sensitivity analysis studies were also performed with the Escherichia coli iAF1260 metabolic model concerning specific growth rates and flux distributions. The results obtained suggest that the macromolecular composition is conserved among related organisms. Contrasting, experimental data for amino acid composition seem to have no similarities for related organisms. It was also observed that the impact of macromolecular composition on specific growth rates and flux distributions is larger than the impact of amino acid composition, even when data from closely related organisms are used.

Development of Janus hydrogel microcapsules as novel biomaterials-stem cells construct for 3D co-culture applications

Co-cultures of two or more cell types and biodegradable biomaterials of natural origin have been successfully combined to recreate tissue microenvironments. Segregated co-cultures are preferred over conventional mixed ones in order to better control the degree of homotypic and heterotypic interactions. Hydrogel-based systems in particular, have gained much attention to mimic tissue-specific microenvironments and they can be microengineered by innovative bottom-up approaches such as microfluidics. In this study, we developed bi-compartmentalized (Janus) hydrogel microcapsules of methacrylated hyaluronic acid (MeHA)/methacrylated-chitosan (MeCht) blended with marine-origin collagen by droplet-based microfluidics co-flow. Human adipose stem cells (hASCs) and microvascular endothelial cells (hMVECs) were co-encapsulated to create platforms of study relevant for vascularized bone tissue engineering. A specially designed Janus-droplet generator chip was used to fabricate the microcapsules (<250â μm units) and Janus-gradient co-cultures of hASCs: hMVECs were generated in various ratios (90:10; 75:25; 50:50; 25:75; 10:90), through an automated microfluidic flow controller (Elveflow microfluidics system). Such monodisperse 3D co-culture systems were optimized regarding cell number and culture media specific for concomitant maintenance of both phenotypes to establish effective cell-cell (homotypic and heterotypic) and cell-materials interactions. Cellular parameters such as viability, matrix deposition, mineralization and hMVECs re-organization in tube-like structures, were enhanced by blending MeHA/MeCht with marine-origin collagen and increasing hASCs: hMVECs co-culture gradient had significant impact on it. Such Janus hybrid hydrogel microcapsules can be used as a platform to investigate biomaterials interactions with distinct combined cell populations.

Development of polymeric nanoparticles containing neuroprotective compounds of Hypericum perforatum

Tese de Doutoramento em Biologia das Plantas - MAP BIOPLANT

Development of Monoolein-based lipofection vectors for therapeutic siRNA delivery

Tese de Doutoramento em Biologia Molecular e Ambiental - Especialidade em Biologia Celular e Saúde

Development of a novel aptamer-based multi-sensor device for the detection of osteopontin

Doctoral Dissertation for PhD degree in Chemical and Biological Engineering

Development of multifunctional coatings deposited on polymers based sensors for biomedical applications

Tese de Doutoramento (Programa Doutoral em Engenharia de Materiais)

Current approaches and future perspectives on strategies for the development of personalized tissue engineering therapies

Personalized tissue engineering and regenerative medicine (TERM) therapies propose patient-oriented effective solutions, considering individual needs. Cell-based therapies, for example, may benefit from cell sources that enable easier autologous set-ups or from recent developments on IPS cells technologies towards effective personalized therapeutics. Furthermore, the customization of scaffold materials to perfectly fit a patientâ s tissue defect through rapid prototyping technologies, also known as 3D printing, is now a reality. Nevertheless, the timing to expand cells or to obtain functional in vitrotissue substitutes prior to implantation prevents advancements towards routine use upon patient´s needs. Thus, personalized therapies also anticipate the importance of creating off-the-shelf solutions to enable immediately available tissue engineered products. This paper reviews the main recent developments and future challenges to enable personalized TERM approaches and to bring these technologies closer to clinical applications.

Development of a poly(L-Lactic acid) based drug release system

Dissertação de mestrado em Biofísica e Bionanossistemas

Development of active bio-based multilayer systems: encapsulation of cinnamaldehyde and their physicochemical characterization

[Excerpt] In this work, different multilayer structures, using a polyhydroxybutyrate-co-valerate film with a valerate content of 8% (PHBV8) as support, were developed aiming the development of active bio-based multilayer systems. An interlayer based on zein nanofibers with and without cinnamaldehyde were electrospun in the PHBV8 film and three multilayer systems were developed: 1) without an outer layer; 2) using a PHBV8 film as outer layer; and 3) using an alginate-based film as outer layer. Their physico-chemical properties were evaluated through: water vapour and oxygen permeabilities and colour measurements, Fourier Transform Infrared Spectroscopy (FTIR) and thermal analyses. Results showed that the presence of different outer layers affected the water vapour permeability and transparency of the multilayer films. (...)

Development of a biorefinery–based bioprocess for pigment and lipid production by oleaginous yeasts

Dissertação de mestrado em Bioengenharia

Development of nanohydrogels as a vehicle for the release of bioactive compounds in food matrices

PhD in Chemical and Biological Engineering

Development of composite auxetic structures for civil engineering applications

Tese de Doutoramento em Engenharia Têxtil

Development of a water-in-oil-in-water multiple emulsion system integrating biomimetic aqueous-core lipid nanodroplets for protein entity stabilization. Part I: experimental factorial design

Lipid nanoballoons integrating multiple emulsions of the type water-in-oil-in-water enclose, at least in theory, a biomimetic aqueous-core suitable for housing hydrophilic biomolecules such as proteins, peptides and bacteriophage particles. The research effort entertained in this paper reports a full statistical 23x31 factorial design study (three variables at two levels and one variable at three levels) to optimize biomimetic aqueous-core lipid nanoballoons for housing hydrophilic protein entities. The concentrations of protein, lipophilic and hydrophilic emulsifiers, and homogenization speed were set as the four independent variables, whereas the mean particle hydrodynamic size (HS), zeta potential (ZP) and polydispersity index (PI) were set as the dependent variables. The V23x31 factorial design constructed led to optimization of the higher (+1) and lower (-1) levels, with triplicate testing for the central (0) level, thus producing thirty three experiments and leading to selection of the optimized processing parameters as 0.015% (w/w) protein entity, 0.75% (w/w) lipophilic emulsifier (soybean lecithin) and 0.50% (w/w) hydrophilic emulsifier (poloxamer 188). In the present research effort, statistical optimization and production of protein derivatives encompassing full stabilization of their three-dimensional structure, has been attempted via housing said molecular entities within biomimetic aqueous-core lipid nanoballoons integrating a multiple (W/O/W) emulsion.

Experimental procedures for the identification of material properties of intervertebal disc - a contribution for the development of biomimetic substitutes for the nucleus pulposus

Tese de Doutoramento em Engenharia Mecânica.

Factores de virulencia involucrados en el Síndrome Urémico Hemolítico y desarrollo de estrategias terapéuticas. Factors of virulence involved in the Hemolytic Uremic Syndrome and development of therapeutic strategies.

La alta incidencia del Síndrome Urémico Hemolítico(SUH) en Argentina conjuntamente con la severidad de esta patología en niños, han motivado la investigación de numerosos grupos. Si bien se ha reconocido la participación de apoptósis a nivel renal y de leucocitos, aun no se ha profundizado el posible rol del estrés oxidativo en el daño a estas células y otras que son afectadas durante esta patología, ni la relación con el estímulo de especies reactivas del oxígeno(ERO) y del nitrógeno (ERN). Hipótesis: El daño sufrido por el organismo durante el SUH se debe a más de un factor de virulencia incluyendo la Shiga toxina (Stx) o Vero toxina (VT), los que en conjunto causan injuria oxidativa principalmente en células sanguíneas y renales; siendo más sensibles al estrés los niños con falencias en las defensas antioxidantes, que serían los que derivan a fallas renales severas. Es posible que un tratamiento protector antiestrés oxidativo después de la detección del SUH prevenga el curso hacia el daño renal crónico y otras graves secuelas de éste síndrome. Obj.general: Efectuar aportes al conocimiento y tratamiento del SUH, investigando el mecanismo de acción de los principales factores de virulencia de E.coli Entero Hemorrágica (EHEC), planteando estrategias terapéuticas futuras para contrarrestar el estrés oxidativo que pudiese estar involucrado. Obj.específicos: Investigar si la Stx y/o la hemolisina (Hly) de E.coli estimulan la producción de ERO y ERN en células del huésped, causando oxidación de proteínas y lípidos. Estudiar si la respuesta de los eritrocitos ante injurias oxidativas se podría utilizar como parámetro para detectar mayor susceptibilidad a Stx y Hly. Investigar si las defensas antioxidantes intracelulares y plasmáticas se incrementan con secuestrantes de radicales y antioxidantes naturales; estabilizando el potencial de membrana e impidiendo el incremento de biomarcadores de estrés oxidativo. Esclarecer aspectos que involucran al estrés oxidativo en la acción de antibióticos sobre células sanguíneas, líneas celulares y E.coli en estado planctónico o en biofilms, investigando qué antimicrobianos aumentan la liberación de Stx y Hly. Estudiar sustancias antioxidantes naturales y alimentos que puedan ser aplicados en terapia y prevención del SUH. Mat.y Met.: Se trabajará con cepas de bacterias que fueron obtenidas de pacientes con SUH. Stx y Hly serán purificadas por cromatografía afinidad y de intercambio iónico, respectivamente. Ensayos de quimioluminiscencia serán aplicados para determinar el estímulo de ERO, mientras que ERN se cuantificarán por Griess. Los niveles de marcadores de daño oxidativo se estudiarán para oxidación de lípidos, proteínas y otros productos avanzados de oxidación proteica. Rdos esperados: Se espera encontrar acción estresante de Stx y/o Hly sobre eritrocitos y otras células, así como biomarcadores de oxidación en diferentes macromoléculas sanguíneas. Es probable que exista diferente nivel de defensa contra esta injuria en niños con SUH; de ser así estos pacientes son susceptibles de recaídas y cronicidad en el proceso por falta de niveles adecuados de antioxidantes. Es necesario entonces encontrar terapias a largo plazo que aumenten las defensas contra el estrés oxidativo causado por E.coli u otras noxas con que se enfrente el niño predispuesto. Se cuenta con antecedentes en el laboratorio que indican conveniente una dieta rica en antioxidantes, así como otros probables fármacos en estudio. Importancia del proyecto. Este proyecto permitirá continuar con investigaciones propias que muestran acción estresante de ERO en eritrocitos por parte de cepas causantes de SUH. La continuidad de estos estudios puede representar un avance en la terapia de una patología cada vez más frecuente en Argentina. Los avances que se consigan podrían posibilitar un tratamiento preventivo en niños en general, así como una mejor evolución de los casos que derivan actualmente en diálisis.