Fully automated software solution for protein quantitation by global metabolic labeling with stable isotopes

Metabolic stable isotope labeling is increasingly employed for accurate protein (and metabolite) quantitation using mass spectrometry (MS). It provides sample-specific isotopologues that can be used to facilitate comparative analysis of two or more samples. Stable Isotope Labeling by Amino acids in Cell culture (SILAC) has been used for almost a decade in proteomic research and analytical software solutions have been established that provide an easy and integrated workflow for elucidating sample abundance ratios for most MS data formats. While SILAC is a discrete labeling method using specific amino acids, global metabolic stable isotope labeling using isotopes such as (15)N labels the entire element content of the sample, i.e. for (15)N the entire peptide backbone in addition to all nitrogen-containing side chains. Although global metabolic labeling can deliver advantages with regard to isotope incorporation and costs, the requirements for data analysis are more demanding because, for instance for polypeptides, the mass difference introduced by the label depends on the amino acid composition. Consequently, there has been less progress on the automation of the data processing and mining steps for this type of protein quantitation. Here, we present a new integrated software solution for the quantitative analysis of protein expression in differential samples and show the benefits of high-resolution MS data in quantitative proteomic analyses.

Optimization of algorithm to identification of duplicate tuples through similarity phonetic based on multithreading

Aiming to ensure greater reliability and consistency of data stored in the database, the data cleaning stage is set early in the process of Knowledge Discovery in Databases (KDD) and is responsible for eliminating problems and adjust the data for the later stages, especially for the stage of data mining. Such problems occur in the instance level and schema, namely, missing values, null values, duplicate tuples, values outside the domain, among others. Several algorithms were developed to perform the cleaning step in databases, some of them were developed specifically to work with the phonetics of words, since a word can be written in different ways. Within this perspective, this work presents as original contribution an optimization of algorithm for the detection of duplicate tuples in databases through phonetic based on multithreading without the need for trained data, as well as an independent environment of language to be supported for this. © 2011 IEEE.

Monte-Carlo-Simulationen zum Phasenverhalten binärer Polymerbürsten

Diese Arbeit beschäftigt sich mit Strukturbildung im schlechten Lösungsmittel bei ein- und zweikomponentigen Polymerbürsten, bei denen Polymerketten durch Pfropfung am Substrat verankert sind. Solche Systeme zeigen laterale Strukturbildungen, aus denen sich interessante Anwendungen ergeben. Die Bewegung der Polymere erfolgt durch Monte Carlo-Simulationen im Kontinuum, die auf CBMC-Algorithmen sowie lokalen Monomerverschiebungen basieren. Eine neu entwickelte Variante des CBMC-Algorithmus erlaubt die Bewegung innerer Kettenteile, da der bisherige Algorithmus die Monomere in Nähe des Pfropfmonomers nicht gut relaxiert. Zur Untersuchung des Phasenverhaltens werden mehrere Analysemethoden entwickelt und angepasst: Dazu gehören die Minkowski-Maße zur Strukturuntersuchung binären Bürsten und die Pfropfkorrelationen zur Untersuchung des Einflusses von Pfropfmustern. Bei einkomponentigen Bürsten tritt die Strukturbildung nur beim schwach gepfropften System auf, dichte Pfropfungen führen zu geschlossenen Bürsten ohne laterale Struktur. Für den graduellen Übergang zwischen geschlossener und aufgerissener Bürste wird ein Temperaturbereich bestimmt, in dem der Übergang stattfindet. Der Einfluss des Pfropfmusters (Störung der Ausbildung einer langreichweitigen Ordnung) auf die Bürstenkonfiguration wird mit den Pfropfkorrelationen ausgewertet. Bei unregelmäßiger Pfropfung sind die gebildeten Strukturen größer als bei regelmäßiger Pfropfung und auch stabiler gegen höhere Temperaturen. Bei binären Systemen bilden sich Strukturen auch bei dichter Pfropfung aus. Zu den Parametern Temperatur, Pfropfdichte und Pfropfmuster kommt die Zusammensetzung der beiden Komponenten hinzu. So sind weitere Strukturen möglich, bei gleicher Häufigkeit der beiden Komponenten bilden sich streifenförmige, lamellare Muster, bei ungleicher Häufigkeit formt die Minoritätskomponente Cluster, die in der Majoritätskomponente eingebettet sind. Selbst bei gleichmäßig gepfropften Systemen bildet sich keine langreichweitige Ordnung aus. Auch bei binären Bürsten hat das Pfropfmuster großen Einfluss auf die Strukturbildung. Unregelmäßige Pfropfmuster führen schon bei höheren Temperaturen zur Trennung der Komponenten, die gebildeten Strukturen sind aber ungleichmäßiger und etwas größer als bei gleichmäßig gepfropften Systemen. Im Gegensatz zur self consistent field-Theorie berücksichtigen die Simulationen Fluktuationen in der Pfropfung und zeigen daher bessere Übereinstimmungen mit dem Experiment.

Determinación paramétrica para el análisis de la viabilidad técnico económica de la implantación de un parque de aprovechamiento energético de corrientes marinas mediante un generador en inmersión con rotor de eje horizontal

La presente Tesis se ha centrado en un análisis de la tecnología para la generación de energía eléctrica utilizando las corrientes marinas. El contenido desarrollado ha consistido en un análisis de las distintas alternativas para poder aprovechar la energía oceánica con especial interés en los desarrollos tecnológicos de las corrientes marinas. Posteriormente se ha descrito un nuevo prototipo, basado en un diseño de un generador en inmersión con rotor de eje horizontal con estructura en Y, denominado proyecto GESMEY. Se han analizado diversas localizaciones para poder implantar un prototipo experimental del proyecto GESMEY, así como las posibles localizaciones para implementar un parque de explotación comercial basado en esta tecnología, llegando a conclusiones importantes referidas a la costa española, y definiendo localizaciones muy interesantes en la costa Escocesa. Finalmente se han analizado diversos parámetros de definición de estos parques de aprovechamiento de la energía, clasificándolos como parámetros técnicos, de ubicación, de utilización, medioambientales y económicos. A la vista de la investigación realizada se ha concluido que hay muchas líneas de investigación que desarrollar, y que desde un punto de vista estratégico hay muchas actuaciones que poner en marcha para potenciar la tecnología de las energías renovables marinas mediante corrientes marinas. ABSTRACT This thesis has focused on an analysis of technology for generating electrical power using ocean currents. The content developed consisted of an analysis of the alternatives to take advantage of ocean energy with special emphasis on the technological developments of ocean currents. Subsequently it described a new prototype, based on a design of a generator rotor immersion horizontal axis Y structure, called GESMEY project. We analyzed different locations to implement an experimental prototype GESMEY project and possible locations to deploy a fleet of commercial exploitation based on this technology, reaching important conclusions regarding the Spanish coast, and defining interesting locations on the coast Scottish. Finally, we have analyzed various parameters defining these parks use of energy, classifying them as technical parameters, location, utilization, environmental and economic. In view of the conducted research has concluded that there are many lines of research to develop, and that from a strategic point of view there are many actions to implement to enhance the technology of marine renewable energies by sea currents.

Optimización del proceso de empaque de BANAFRUTS S.A.S. desde el punto de vista de la Teoría de Restricciones

Como resultado de la Misión Empresarial Caribe realizada por la Escuela de Administración de la Universidad del Rosario en abril de 2016, se realizó el presente documento donde se plantea una propuesta de mejora para el proceso de empaque de BanaFruts S.A.S. mediante el uso de teorías administrativas enfocadas a la gestión de calidad del producto como: Teoría de Restricciones, Kaizen y Cero defectos. La propuesta consiste en tener un proceso de control de calidad mucho menos repetitivo y más eficiente a lo largo del empaque del producto, donde solo los operarios de desmane se deberán encargar de definir cuáles bananos cumplen o no con las especificaciones de DOLE en esa etapa y además se aseguren de cumplir con nuevos límites de saturación de los frutos en las piscinas. Éstos se encontrarán en donde se alcanza el 90% de la capacidad de cada tanque. Para el de desmane estará a una altura de 0.54m; y para el de saneo estará a una altura de 0.49m. Así se actuará der manera preventiva y no reactiva como sucede actualmente, garantizando que los bananos no se lastimen y se reduzca el exceso de revisión a lo largo del proceso. Este cambio de gestión de calidad permitirá en primera instancia que los trabajadores en etapas diferentes a las de desmane se enfoquen en una sola tarea y no tengan que volver a verificar los aspectos de calidad del producto, seguido de un aumento de productividad en el procesamiento de los bananos por parte de éstos. Adicionalmente, se hace énfasis en la importancia de la mejora continua del proceso en general para asegurar un incremento gradual en la productividad. Para esto se propone un nuevo modelo de gestión de los recursos humanos donde los operarios serán más proactivos, tendrán una mayor participación en la identificación y solución de problemas y se encargarán de llevar a cabo sus labores de manera más eficiente. En este sentido, las acciones a tomar serán: seleccionar, organizar, limpiar y estandarizar. Finalmente, hay que estandarizar el proceso, es decir que debe existir una revisión continua para no permitir que los errores se repitan. Todas estas acciones estarán a cargo de un equipo líder llamado “Equipo BanaFruts”. Éste tendrá la responsabilidad de acompañar a los trabajadores en la realización de las actividades mencionadas y medir sus resultados.

The design and implementation of a repository for the management of spatial data integrity constraints

This paper reviews the key features of an environment to support domain users in spatial information system (SIS) development. It presents a full design and prototype implementation of a repository system for the storage and management of metadata, focusing on a subset of spatial data integrity constraint classes. The system is designed to support spatial system development and customization by users within the domain that the system will operate.

Design and implementation of an autonomous, proactive, and reactive software infrastructure to help improving the management level of projects

Dissertação apresentada na Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para obtenção do grau de Mestre em Engenharia Electrotécnica e de Computadores

Power-line-communication-based data transmission concept for an LVDC electricity distribution network – Analysis and implementation

Communications play a key role in modern smart grids. New functionalities that make the grids ‘smart’ require the communication network to function properly. Data transmission between intelligent electric devices (IEDs) in the rectifier and the customer-end inverters (CEIs) used for power conversion is also required in the smart grid concept of the low-voltage direct current (LVDC) distribution network. Smart grid applications, such as smart metering, demand side management (DSM), and grid protection applied with communications are all installed in the LVDC system. Thus, besides remote connection to the databases of the grid operators, a local communication network in the LVDC network is needed. One solution applied to implement the communication medium in power distribution grids is power line communication (PLC). There are power cables in the distribution grids, and hence, they may be applied as a communication channel for the distribution-level data. This doctoral thesis proposes an IP-based high-frequency (HF) band PLC data transmission concept for the LVDC network. A general method to implement the Ethernet-based PLC concept between the public distribution rectifier and the customerend inverters in the LVDC grid is introduced. Low-voltage cables are studied as the communication channel in the frequency band of 100 kHz–30 MHz. The communication channel characteristics and the noise in the channel are described. All individual components in the channel are presented in detail, and a channel model, comprising models for each channel component is developed and verified by measurements. The channel noise is also studied by measurements. Theoretical signalto- noise ratio (SNR) and channel capacity analyses and practical data transmission tests are carried out to evaluate the applicability of the PLC concept against the requirements set by the smart grid applications in the LVDC system. The main results concerning the applicability of the PLC concept and its limitations are presented, and suggestion for future research proposed.

Design principles of semantic binary database management systems

The Semantic Binary Data Model (SBM) is a viable alternative to the now-dominant relational data model. SBM would be especially advantageous for applications dealing with complex interrelated networks of objects provided that a robust efficient implementation can be achieved. This dissertation presents an implementation design method for SBM, algorithms, and their analytical and empirical evaluation. Our method allows building a robust and flexible database engine with a wider applicability range and improved performance. ^ Extensions to SBM are introduced and an implementation of these extensions is proposed that allows the database engine to efficiently support applications with a predefined set of queries. A New Record data structure is proposed. Trade-offs of employing Fact, Record and Bitmap Data structures for storing information in a semantic database are analyzed. ^ A clustering ID distribution algorithm and an efficient algorithm for object ID encoding are proposed. Mapping to an XML data model is analyzed and a new XML-based XSDL language facilitating interoperability of the system is defined. Solutions to issues associated with making the database engine multi-platform are presented. An improvement to the atomic update algorithm suitable for certain scenarios of database recovery is proposed. ^ Specific guidelines are devised for implementing a robust and well-performing database engine based on the extended Semantic Data Model. ^

Towards the wide implementation of standards IEC 61968/70 (CIM) and IEC 61850 in the distribution system (CIGRÉ C6-105_2010)

Currently, power systems (PS) already accommodate a substantial penetration of distributed generation (DG) and operate in competitive environments. In the future, as the result of the liberalisation and political regulations, PS will have to deal with large-scale integration of DG and other distributed energy resources (DER), such as storage and provide market agents to ensure a flexible and secure operation. This cannot be done with the traditional PS operational tools used today like the quite restricted information systems Supervisory Control and Data Acquisition (SCADA) [1]. The trend to use the local generation in the active operation of the power system requires new solutions for data management system. The relevant standards have been developed separately in the last few years so there is a need to unify them in order to receive a common and interoperable solution. For the distribution operation the CIM models described in the IEC 61968/70 are especially relevant. In Europe dispersed and renewable energy resources (D&RER) are mostly operated without remote control mechanisms and feed the maximal amount of available power into the grid. To improve the network operation performance the idea of virtual power plants (VPP) will become a reality. In the future power generation of D&RER will be scheduled with a high accuracy. In order to realize VPP decentralized energy management, communication facilities are needed that have standardized interfaces and protocols. IEC 61850 is suitable to serve as a general standard for all communication tasks in power systems [2]. The paper deals with international activities and experiences in the implementation of a new data management and communication concept in the distribution system. The difficulties in the coordination of the inconsistent developed in parallel communication and data management standards - are first addressed in the paper. The upcoming unification work taking into account the growing role of D&RER in the PS is shown. It is possible to overcome the lag in current practical experiences using new tools for creating and maintenance the CIM data and simulation of the IEC 61850 protocol – the prototype of which is presented in the paper –. The origin and the accuracy of the data requirements depend on the data use (e.g. operation or planning) so some remarks concerning the definition of the digital interface incorporated in the merging unit idea from the power utility point of view are presented in the paper too. To summarize some required future work has been identified.

Distribution system operation supported by contextual energy resource management based on intelligent SCADA

Future distribution systems will have to deal with an intensive penetration of distributed energy resources ensuring reliable and secure operation according to the smart grid paradigm. SCADA (Supervisory Control and Data Acquisition) is an essential infrastructure for this evolution. This paper proposes a new conceptual design of an intelligent SCADA with a decentralized, flexible, and intelligent approach, adaptive to the context (context awareness). This SCADA model is used to support the energy resource management undertaken by a distribution network operator (DNO). Resource management considers all the involved costs, power flows, and electricity prices, allowing the use of network reconfiguration and load curtailment. Locational Marginal Prices (LMP) are evaluated and used in specific situations to apply Demand Response (DR) programs on a global or a local basis. The paper includes a case study using a 114 bus distribution network and load demand based on real data.

Design and implementation of a behaviorally typed programming system for web services

Dissertação apresentada na Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para a obtenção do Grau de Mestre em Engenharia Informática.

Towards a GIS-T database design and implementation for public transit planning: the case study of Dar-Es-salaam metropolitan city, Tanzania.

Dissertation submitted in partial fulfilment of the requirements for the Degree of Master of Science in Geospatial Technologies

Design and implementation of 3D buildings integration for a Webgl-Based Virtual Globe: a case study of Valencian Cadastre and Fide Building Mode

Dissertation submitted in partial fulfillment of the requirements for the Degree of Master of Science in Geospatial Technologies.

Participatory mapping in the design process of a spatial data infrastructure SDI: a case study in the Biosphere Reserve Rio Platano (Honduras)

Dissertation submitted in partial fulfillment of the requirements for the Degree of Master of Science in Geospatial Technologies.