A novel information theory method for filter feature selection

In this paper, we propose a novel filter for feature selection. Such filter relies on the estimation of the mutual information between features and classes. We bypass the estimation of the probability density function with the aid of the entropic-graphs approximation of Rényi entropy, and the subsequent approximation of the Shannon one. The complexity of such bypassing process does not depend on the number of dimensions but on the number of patterns/samples, and thus the curse of dimensionality is circumvented. We show that it is then possible to outperform a greedy algorithm based on the maximal relevance and minimal redundancy criterion. We successfully test our method both in the contexts of image classification and microarray data classification.

Comparación de las aplicaciones de Google y Yahoo para la geocodificación de direcciones postales con fines epidemiológicos

Fundamentos: Geocodificar es asignar coordenadas geográficas a puntos del espacio, frecuentemente direcciones postales. El error cometido al aplicar este proceso puede introducir un sesgo en las estimaciones de modelos espacio-temporales en estudios epidemiológicos. No se han encontrado estudios que midan este error en ciudades españolas. El objetivo es evaluar los errores en magnitud y direccionalidad de dos recursos gratuitos (Google y Yahoo) respecto a GPS en dos ciudades de España. Método: Se geocodificaron 30 direcciones aleatorias con los dos recursos citados y con GPS en Santa Pola (Alicante) y en Alicante. Se calculó la mediana y su IC95% del error en metros entre los recursos y GPS, para el total y por el status reportado. Se evaluó la direccionalidad del error calculando el cuadrante de localización y aplicando un test Chi-Cuadrado. Se evaluó el error del GPS midiendo 11 direcciones dos veces en un intervalo de 4 días. Resultados: La mediana del error total desde Google-GPS fue de 23,2 metros (16,0-32,2) para Santa Pola y 21,4 metros (14,9-31,1) en Alicante. Para Yahoo fue de 136,0 (19,2-318,5) para Santa Pola y 23,8 (13,6-29,2) para Alicante. Por status, se geocodificó entre un 73% y 90% como ‘exactas o interpoladas’ (menor error), tanto Google como Yahoo tuvieron una mediana del error de entre 19 y 22 metros en las dos ciudades. El error del GPS fue de 13,8 (6,7-17,8) metros. No se detectó direccionalidad. Conclusiones: El error de Google es asumible y estable en las dos ciudades, siendo un recurso fiable para geocodificar direcciones postales en España en estudios epidemiológicos.

Vibration frequency measurement using a local multithreshold technique

In this paper, we demonstrate the use of a video camera for measuring the frequency of small-amplitude vibration movements. The method is based on image acquisition and multilevel thresholding and it only requires a video camera with high enough acquisition rate, not being necessary the use of targets or auxiliary laser beams. Our proposal is accurate and robust. We demonstrate the technique with a pocket camera recording low-resolution videos with AVI-JPEG compression and measuring different objects that vibrate in parallel or perpendicular direction to the optical sensor. Despite the low resolution and the noise, we are able to measure the main vibration modes of a tuning fork, a loudspeaker and a bridge. Results are successfully compared with design parameters and measurements with alternative devices.

Changes in the Photoreceptor Mosaic of P23H-1 Rats During Retinal Degeneration: Implications for Rod-Cone Dependent Survival

Purpose. To investigate the spatiotemporal relationship between rod and cone degeneration in the P23H-1 rat. Methods. Control Sprague-Dawley (SD) and P23H-1 rats of ages ranging from P30 to P365 were used. Retinas were processed for whole mounts or cross sections and rods and cones were immunodetected. We used newly developed image analysis techniques to quantify the total population of L/M cones (the most abundant cones in the rat) and analyzed the rings of rod-cone degeneration. Results. In P23H-1 rats, rod degeneration occurs rapidly: first the rod outer segment shortens, at P30 there is extensive rod loss, and by P180 rod loss is almost complete except for the most peripheral retina. The numbers of L/M cones are, at all postnatal ages, lower in P23H-1 rats than in control SD rats, and decrease significantly with age (by P180). Rod and cone degeneration is spatiotemporally related and occurs in rings that appear already at P90 and spread throughout the entire retina. At P180, the rings of rod-cone degeneration are more abundant in the equatorial retina and are larger in the dorsal retina. Conclusions. This work describes for the first time that in the P23H-1 rat, rod and cone degeneration is spatiotemporally related and occurs in rings. Cone loss follows rod loss and starts very soon, even before P30, the first age analyzed here. The characteristics of the rings suggest that secondary cone degeneration is influenced by retinal position and/or other intrinsic or extrinsic factors.

Postproduciendo (casi) nada

Postproducción es un término extraído de la industria audiovisual que alude a todas las operaciones realizadas sobre un material YA grabado o existente: música, fotografías, videos, películas, pinturas, etc. Tiene mayoritariamente un carácter entrópico, de liberación continua e irreversible de energías y nuevos productos reprogramados que revisan productos ya anteriormente reprogramados, y así de manera sucesiva hasta el infinito. ¿Podríamos imaginar una postproducción de sentido contrario? ¿Una postproducción cuyo esfuerzo tienda a cero? ¿Y si ahora preferimos seguir postproduciendo pero haciéndolo desde (casi) nada? Si extrapolamos esta otra acepción directamente hacia la práctica arquitectónica, estaríamos reivindicando una forma explícita de eficacia donde la manera de proceder (la mejor opción, la más sostenible) puede ser precisamente ‘no hacer’ o ‘hacer muy poco’. Una semejanza que nos emparentaría con Bartleby, el personaje de Herman Melville y su célebre frase: “preferiría no hacerlo”.

2C-Cas9: a versatile tool for clonal analysis of gene function

CRISPR/Cas9-mediated targeted mutagenesis allows efficient generation of loss-of-function alleles in zebrafish. To date this technology has been primarily used to generate genetic knockout animals. Nevertheless, the study of the function of certain loci might require tight spatiotemporal control of gene inactivation. Here, we show that tissue-specific gene disruption can be achieved by driving Cas9 expression with the Gal4/UAS system. Furthermore, by combining the Gal4/UAS and Cre/loxP systems, we establish a versatile tool to genetically label mutant cell clones, enabling their phenotypic analysis. Our technique has the potential to be applied to diverse model organisms, enabling tissue-specific loss-of-function and phenotypic characterization of live and fixed tissues.

Sedimentary and carbonate preservation of ODP Sites 1262, 1263 and 1266

Rapid carbon input into the ocean-atmosphere system caused a dramatic shoaling of the lysocline during the Paleocene-Eocene thermal maximum (PETM), a transient (~170 kyr) global warming event that occurred roughly 55 Ma. Carbon cycle models invoking an accelerated carbonate-silicate feedback mechanism to neutralize ocean acidification predict that the lysocline would subsequently deepen to depths below its original position as the marine carbonate system recovered from such a perturbation. To test this hypothesis, records of carbonate sedimentation and preservation for PETM sections in the Weddell Sea (ODP Site 690) and along the Walvis Ridge depth transect (ODP Sites 1262, 1263, and 1266) were assembled within the context of a unified chronostratigraphy. The meridional gradient of undersaturation delimited by these records shows that dissolution was more severe in the subtropical South Atlantic than in the Weddell Sea during the PETM, a spatiotemporal pattern inconsistent with the view that Atlantic overturning circulation underwent a transient reversal. Deepening of the lysocline following its initial ascent is signaled by increases in %CaCO3 and coarse-fraction content at all sites. Carbonate preservation during the recovery period is appreciably better than that seen prior to carbon input with carbonate sedimentation becoming remarkably uniform over a broad spectrum of geographic and bathymetric settings. These congruent patterns of carbonate sedimentation confirm that the lysocline was suppressed below the depth it occupied prior to carbon input, and are consistent with the view that an accelerated carbonate-silicate geochemical cycle played an important role in arresting PETM conditions.

Archaeological sites in China during the Neolithic and Bronze Age

A total of 51,074 archaeological sites from the early Neolithic to the early Iron Age (c. 8000-500 BC), with a spatial extent covering most regions of China (c. 73-131°E and c. 20-53°N), were analysed over space and time in this study. Site maps of 25 Chinese provinces, autonomous regions and municipalities, published in the series 'Atlas of Chinese Cultural Relics', were used to extract, digitalise and correlate its archaeological data. The data were, in turn, entered into a database using a self-developed mapping software that makes the data, in a dynamic way, analysable as a contribution to various scientific questions, such as population growth and migrations, spread of agriculture and changes in subsistence strategies. The results clearly show asynchronous patterns of changes between the northern and southern parts of China (i.e. north and south of the Yangtze River, respectively) but also within these macro-regions. In the northern part of China (i.e. along the Yellow River and its tributaries and in the Xiliao River basin), the first noticeable increase in the concentration of Neolithic sites occurred between c. 5000 and 4000 BC; however, highest site concentrations were reached between c. 2000 and 500 BC. Our analysis shows a radical north-eastern shift of high site-density clusters (over 50 sites per 100 * 100 km grid cell) from the Wei and middle/lower Yellow Rivers to the Liao River system sometime between 2350 BC and 1750 BC. This shift is hypothetically discussed in the context of the incorporation of West Asian domesticated animals and plants into the existing northern Chinese agricultural system. In the southern part of China, archaeological sites do not show a noticeable increase in the absolute number of sites until after c. 1500 BC, reaching a maximum around 1000 BC.

Age and chemical composition of volcaniclastic rocks from the Sea of Japan

Petrographic and geochemical studies showed that Oligocene - Early Miocene volcaniclastic rocks from the southern part of the Sea of Japan are ascribed to high-potassium aluminous rocks of sub-alkaline volcanic series from active continental margins. A comparative analysis revealed spatiotemporal relation of Oligocene - Early Miocene subaerial volcanism of the Sea of Japan with Late Cretaceous and Eocene - Early Miocene ignimbrite volcanism of the East Eurasian margin. This allows to refer the volcaniclastic rocks of the Sea of Japan to the stage of ignimbrite volcanism that occurred during relative quiescence against general extension in the continental margin setting.

In-home Assessment of Turning and Transitions using Inertial Sensors in Older Adults with Dementia and Older Caregivers

Thesis (Master's)--University of Washington, 2016-06

Operations and Planning in Sustainable Power Systems

Thesis (Ph.D.)--University of Washington, 2016-06

Air pollution exposure and novel biomarkers of inflammation and cardiac stress in the Multi-Ethnic Study of Atherosclerosis and Air Pollution (MESA Air)

Thesis (Master's)--University of Washington, 2016-06

Methylomic and Transcriptomic Insights Linking Air Pollution and Atherosclerosis

Thesis (Ph.D.)--University of Washington, 2016-06

Statistical Hurdle Models for Single Cell Gene Expression: Differential Expression and Graphical Modeling

Thesis (Ph.D.)--University of Washington, 2016-06

Ultra-wideband multistatic SAR for the detection and location of landmines

Techniques for improving the signal to clutter ratio of an. ultra-wideband SAR designed to detect small mine-like objects in the surface of the ground were investigated. In particular, images were collected using different bistatic antenna configurations in an attempt to decorrelate the clutter with respect to the targets. The images were converted to a reference depression angle, summed, and then converted to ground coordinates. The resulting target strengths were then compared with the amplitude distribution of the ground clutter to show the improvement obtained. While some improvement was demonstrated, this was for the relatively easy scenario of targets on the surface partially obscured by grass. Detection based on thresholding the raw RF signal (the bipolar response) rather than the envelope (baseband I-2 + Q(2)) was also considered to further enhance target-to-clutter ratios.