Identification of plasmodium vivax proteins with potential role in invasion using sequence redundancy reduction and profile hidden markov models

Background: This study describes a bioinformatics approach designed to identify Plasmodium vivax proteins potentially involved in reticulocyte invasion. Specifically, different protein training sets were built and tuned based on different biological parameters, such as experimental evidence of secretion and/or involvement in invasion-related processes. A profile-based sequence method supported by hidden Markov models (HMMs) was then used to build classifiers to search for biologically-related proteins. The transcriptional profile of the P. vivax intra-erythrocyte developmental cycle was then screened using these classifiers. Results: A bioinformatics methodology for identifying potentially secreted P. vivax proteins was designed using sequence redundancy reduction and probabilistic profiles. This methodology led to identifying a set of 45 proteins that are potentially secreted during the P. vivax intra-erythrocyte development cycle and could be involved in cell invasion. Thirteen of the 45 proteins have already been described as vaccine candidates; there is experimental evidence of protein expression for 7 of the 32 remaining ones, while no previous studies of expression, function or immunology have been carried out for the additional 25. Conclusions: The results support the idea that probabilistic techniques like profile HMMs improve similarity searches. Also, different adjustments such as sequence redundancy reduction using Pisces or Cd-Hit allowed data clustering based on rational reproducible measurements. This kind of approach for selecting proteins with specific functions is highly important for supporting large-scale analyses that could aid in the identification of genes encoding potential new target antigens for vaccine development and drug design. The present study has led to targeting 32 proteins for further testing regarding their ability to induce protective immune responses against P. vivax malaria.

Neuropsychological profile in patients with temporal lobe epilepsy

The temporal lobe epilepsy (TLE) is the most common type of refractory epilepsy in adults. There is a wide consensus regarding the commitment of memory in temporal lobe epilepsy with hippocampal sclerosis. However, the consensus is not as widespread with respect to the other functions such as attention, executive functions, language and intellectual performance. For this study we analyzed retrospectively a group of 76 patients with refractory epilepsy, 48 patients with temporal lobe epilepsy (23 with right lateralization and 25 with left lateralization) and 28 patients with extratemporal epilepsy. We applied a battery of neuropsychological tests used in the Epilepsy Surgery Program at Hospital de Egas Moniz, Lisbon, Portugal. Our results show that the battery of neuropsychological tests is internally consistent in the evaluation of patients with TLE. We have also found that patients with TLE have standard generalized deficits witch could be indicative of areas of engagement besides the hippocampus. One interesting finding was the fact that interference verbal memory (long term memory) remains adequate, suggesting that this function is not compromised in TLE. In addition to the general pattern of cognitive deficits, we can see the impact of the disease at the socio-demographic level, and we can also establish a relationship with neurobiological findings previously described in the literature

Determination of the Anthropometric and Physical Qualities Profile in Footballers Children of Bogotá

Objective. The objective of this study is to define the profile anthropometric and of basic physical qualities, in 306 children in 7-16 yearold ages. Method. Is carried out anthropometric mensurations of weight (kg) and it height (m), IMC (weight (kg)/it height (m2), percentage of corporal fat, besides the test of Course Navatte, horizontal jump without impulse, Sit and Reach to each one of the fellows. Results. The results were analyzed from the statistical point of view with measures of central tendency, you uses the stocking, the typical standard deviation as I calculate of variability, with a p <0,05 like significant difference. You identifies the variable anthropometric and of physical qualities finding differences in the population as for the percentage of corporal fat, the power aerobic, the flexibility and the explosive force in inferior members. Conclusions. Differences are shown in the opposing values and this can be influenced, for nutritional, socioeconomic factors and for the type of used training.

Modelado de procesos de enseñanza-aprendizaje reutilizables con XML, UML e IMS-LD.

El artículo está incluido en un número monográfico especial con los trabajos del I Simposio Pluridisciplinar sobre Diseño, Evaluación y Descripción de Contenidos Educativos Reutilizables (Guadalajara, Octubre 2004).Resumen tomado de la publicación

Smoking habit profile and health-related quality of life

Resumen tomado de la publicación

Enterprising personality profile in youth : components and assessment

Resumen tomado de la publicaci??n

The hardness profile as a tool to detect spurious stationary points in the potential energy surface

The energy and hardness profile for a series of inter and intramolecular conformational changes at several levels of calculation were computed. The hardness profiles were found to be calculated as the difference between the vertical ionization potential and electron affinity. The hardness profile shows the correct number of stationary points independently of the basis set and methodology used. It was found that the hardness profiles can be used to check the reliability of the energy profiles for those chemical system

Gestão e trabalhadores do conhecimento em Tecnologias da informação (UML)

RESUMO: O conhecimento existe desde sempre, mesmo num estado latente condicionado algures e apenas à espera de um meio (de uma oportunidade) de se poder manifestar. O conhecimento é duplamente um fenómeno da consciência: porque dela procede num dado momento da sua vida e da sua história e porque só nela termina, aperfeiçoando-a e enriquecendo-a. O conhecimento está assim em constante mudança. À relativamente pouco tempo começou-se a falar de Gestão do Conhecimento e na altura foi muito associada às Tecnologias da Informação, como meio de colectar, processar e armazenar cada vez mais, maiores quantidades de informação. As Tecnologias da Informação têm tido, desde alguns anos para cá, um papel extremamente importante nas organizações, inicialmente foram adoptadas com o propósito de automatizar os processos operacionais das organizações, que suportam as suas actividades quotidianas e nestes últimos tempos as Tecnologias da Informação dentro das organizações têm evoluído rapidamente. Todo o conhecimento, mesmo até o menos relevante de uma determinada área de negócio, é fundamental para apoiar o processo de tomada de decisão. As organizações para atingirem melhores «performances» e conseguirem transcender as metas a que se propuseram inicialmente, tendem a munir-se de mais e melhores Sistemas de Informação, assim como, à utilização de várias metodologias e tecnologias hoje em dia disponíveis. Por conseguinte, nestes últimos anos, muitas organizações têm vindo a demonstrar uma necessidade crucial de integração de toda a sua informação, a qual está dispersa pelos diversos departamentos constituintes. Para que os gestores de topo (mas também para outros funcionários) possam ter disponível em tempo útil, informação pertinente, verdadeira e fiável dos negócios da organização que eles representam, precisam de ter acesso a bons Sistemas de Tecnologias de Informação. Numa acção de poderem agir mais eficazmente e eficientemente nas tomadas de decisão, por terem conseguido tirar por esses meios o máximo de proveito possível da informação, e assim, apresentarem melhores níveis de sucesso organizacionais. Também, os Sistemas de «Business Intelligence» e as Tecnologias da Informação a ele associadas, utilizam os dados existentes nas organizações para disponibilizar informação relevante para as tomadas de decisão. Mas, para poderem alcançar esses níveis tão satisfatórios, as organizações necessitam de recursos humanos, pois como podem elas serem competitivas sem Luís Miguel Borges – Gestão e Trabalhadores do Conhecimento em Tecnologias da Informação (UML) ULHT – ECATI 6 trabalhadores qualificados. Assim, surge a necessidade das organizações em recrutar os chamados hoje em dia “Trabalhadores do Conhecimento”, que são os indivíduos habilitados para interpretar as informações dentro de um domínio específico. Eles detectam problemas e identificam alternativas, com os seus conhecimentos e discernimento, eles trabalham para solucionar esses problemas, ajudando consideravelmente as organizações que representam. E, usando metodologias e tecnologias da Engenharia do Conhecimento como a modelação, criarem e gerirem um histórico de conhecimento, incluindo conhecimento tácito, sobre várias áreas de negócios da organização, que podem estar explícitos em modelos abstractos, que possam ser compreendidos e interpretados facilmente, por outros trabalhadores com níveis de competência equivalentes. ABSTRACT: Knowledge has always existed, even in a latent state conditioning somewhere and just waiting for a half (an opportunity) to be able to manifest. Knowledge is doubly a phenomenon of consciousness: because proceeds itself at one point in its life and its history and because solely itself ends, perfecting it and enriching it. The knowledge is so in constant change. In the relatively short time that it began to speak of Knowledge Management and at that time was very associated with Information Technologies, as a means to collect, process and store more and more, larger amounts of information. Information Technologies has had, from a few years back, an extremely important role in organizations, were initially adopted in order to automate the operational processes of organizations, that support their daily activities and in recent times Information Technologies within organizations has evolved rapidly. All the knowledge, even to the least relevant to a particular business area, is fundamental to support the process of decision making. The organizations to achieve better performances and to transcend the goals that were initially propose, tend to provide itself with more and better Information Systems, as well as, the use of various methodologies and technologies available today. Consequently, in recent years, many organizations have demonstrated a crucial need for integrating all their information, which is dispersed by the diver constituents departments. For top managers (but also for other employees) may have ready in time, pertinent, truthful and reliable information of the organization they represent, need access to good Information Technology Systems. In an action that they can act more effectively and efficiently in decision making, for having managed to get through these means the maximum possible advantage of the information, and so, present better levels of organizational success. Also, the systems of Business Intelligence and Information Technologies its associated, use existing data on organizations to provide relevant information for decision making. But, in order to achieve these levels as satisfactory, organizations need human resources, because how can they be competitive without skilled workers. Thus, arises the need for organizations to recruit called today “Knowledge Workers”, they are the individuals enable to interpret the information within a specific domain. They detect problems and identify alternatives, with their knowledge and discernment they work to solve these problems, helping considerably the organizations that represent. And, using Luís Miguel Borges – Gestão e Trabalhadores do Conhecimento em Tecnologias da Informação (UML) ULHT – ECATI 8 methodologies and technologies of Knowledge Engineering as modeling, create and manage a history of knowledge, including tacit knowledge, on various business areas of the organization, that can be explicit in the abstract models, that can be understood and interpreted easily, by other workers with equivalent levels of competence.

Evidence of heavy metal movement down the profile of a heavily-sludged soil

Two sites in central England where sewage sludge has been deposited for decades were studied to measure the heavy metal distribution in the soil profiles. The first site (S 1) was a field receiving heavy loads sludge from a nearby wastewater treatment plant, and the second (S2) was a farm applying 'normal' sludge rates of 8 t ha(-1) y(-1) of the same sludge. Soil samples were also taken by a near-by untreated control site. In S I the movement of heavy metals was significant even down to 80 cm depth compared to the control. In S2, the concentrations of lead (Pb) and zinc (Zn) and the organic matter content were higher than the control down to 20 cm, while nickel (Ni) moved significantly down to 80 cm. This underlies. the possibility that the metals bound onto organic surfaces moved along with organic matter down to that depth. The movement of metals in S2 points out the potential risks of applying sewage sludge for a long time.

Calcrete profile development in quaternary alluvial sequences, southeast Spain: Implications for using calcretes as a basis for landform chronologies

A detailed study of the morphology and micro-morphology of Quaternary alluvial calcrete profiles from the Sorbas Basin shows that calcretes may be morphologically simple or complex. The 'simple' profiles reflect pedogenesis occurring after alluvial terrace formation and consist of a single pedogenic horizon near the land surface. The 'complex' profiles reflect the occurrence of multiple calcrete events during terrace sediment aggradation and further periods of pedogenesis after terrace formation. These 'complex' calcrete profiles are consequently described as composite profiles. The exact morphology of the composite profiles depends upon: (1) the number of calcrete-forming events occurring during terrace sediment aggradation; (2) the amount of sediment accretion that occurs between each period of calcrete formation; and (3) the degree of pedogenesis after terrace formation. Simple calcrete profiles are most useful in establishing landform chronologies because they represent a single phase of pedogenesis after terrace formation. Composite profiles are more problematic. Pedogenic calcretes that form within them may inherit carbonate from calcrete horizons occurring lower down in the terrace sediments. In addition erosion may lead to the exhumation of older calcretes within the terrace sediment. Calcrete 'inheritance' may make pedogenic horizons appear more mature than they actually are and produce horizons containing carbonate embracing a range of ages. Calcrete exhumation exposes calcrete horizons whose morphology and radiometric ages are wholly unrelated to terrace surface age. Composite profiles are, therefore, only suitable for chronological studies if the pedogenic horizon capping the terrace sequence can be clearly distinguished from earlier calcrete-forming events. Thus, a detailed morphological/micro-morphological study is required before any chronological study is undertaken. This is the only way to establish whether particular calcrete profiles are suitable for dating purposes. Copyright (C) 2003 John Wiley Sons, Ltd.

City Profile: Havana

Since 1989, after 40 years of curbing urban development and under-investment in urban infrastructure, Havana is slowly regaining its primacy as Cuba's, and indeed one of the Caribbean's. major tourist destinations. This profile focuses on the urban change undergone by Havana since the introduction of the socalled'Special Period' in 1.989, following the collapse of State socialism in the USSR and Eastern Europe. A particular emphasis is placed on the role played by international tourism as a catalyst for socio-economic and environmental change in Havana in the 1990s. The profile also reviews the main urban development and governance issues that Havana is likely to face in the future. (c) 2005 Elsevier Ltd. All rights reserved.

Estimating detailed soil water profile records from point measurements

Temporal and spatial patterns of soil water content affect many soil processes including evaporation, infiltration, ground water recharge, erosion and vegetation distribution. This paper describes the analysis of a soil moisture dataset comprising a combination of continuous time series of measurements at a few depths and locations, and occasional roving measurements at a large number of depths and locations. The objectives of the paper are: (i) to develop a technique for combining continuous measurements of soil water contents at a limited number of depths within a soil profile with occasional measurements at a large number of depths, to enable accurate estimation of the soil moisture vertical pattern and the integrated profile water content; and (ii) to estimate time series of soil moisture content at locations where there are just occasional soil water measurements available and some continuous records from nearby locations. The vertical interpolation technique presented here can strongly reduce errors in the estimation of profile soil water and its changes with time. On the other hand, the temporal interpolation technique is tested for different sampling strategies in space and time, and the errors generated in each case are compared.