Genetic relationship of Chinese ethnic populations revealed by mtDNA sequence diversity

The origin and demographic history of the ethnic populations of China have not been clearly resolved. In this study, we examined the hypervariable segment I sequences (HVSI) of the mitochondrial DNA control region in 372 individuals from nine Chinese popu

Intra- and interspecific variation of the CCR5 gene in higher primates

We have evaluated the molecular evolution of the chemokine receptor CCR5 in primates. The chemokine receptor CCR5 serves as a major co-receptor for human immunodeficiency virus/simian immunodeficiency virus (HIV/SIV) infection. Knowledge of evolution of the CCR5 molecule and selection on the CCR5 gene may shed light on its functional role. The comparison of differences between intraspecific polymorphisms and interspecific fixed substitutions provides useful information regarding modes of selection during the course of evolution. There is marked polymorphism in the CCR5 gene sequence within different primate species, whereas sequence divergence between different species is small. By using contingency tests, we compared synonymous (SS) and nonsynonymous (NS) CCR5 mutations occurring within and between a broad range of primates. Our results demonstrate that CCR5 evolution did not follow expectations, of strict neutrality at the level of the whole gene. The proportion of NS to SS at the intraspecific level was significantly higher than that observed at the interspecific level. These results suggest that most CCR5 NS polymorphisms are slightly deleterious. However, at domains more closely correlated with its known biological functions, there was no obvious evidence to support deviation from neutrality.

Genetic diversity and relationship of Yunnan native cattle breeds and introduced beef cattle breeds

In this study, random amplified polymorphic DNA (RAPD) analysis was used to estimate genetic diversity and relationship in 134 samples belonging to two native cattle breeds from the Yunnan province of China (DeHong cattle and DiQing cattle) and four intro

Phylogenetic studies of pantherine cats (Felidae) based on multiple genes, with novel application of nuclear beta-fibrinogen intron 7 to carnivores

The pantherine lineage of the cat family Felidae (order: Carnivora) includes five big cats of genus Panthera and a great many midsized cats known worldwide. Presumably because of their recent and rapid radiation, the evolutionary relationship among pantherines remains ambiguous. We provide an independent assessment of the evolutionary history of pantherine lineage using two complete mitochondrial (mt) genes (ND2 and ND4) and the nuclear beta-fibrmogen intron 7 gene, whose utility in carnivoran phylogeny was first explored. The available four mt (ND5, cytb, 12S, and 16SrRNA) and two nuclear (IRBP and TTR) sequence loci were also combined to reconstruct phylogeny of 14 closely related cat species. Our analyses of combined mt data (six genes; approximate to 3750 bp) and combined mt and nuclear data (nine genes; approximate to 6500 bp) obtained identical tree topologies, which were well-resolved and strongly supported for almost all nodes. Monophyly of Panthera genus in pantherine lineage was confirmed and interspecific affinities within this genus revealed a novel branching pattern, with P. tigris diverging first in Panthera genus, followed by P. onca, P. leo, and last two sister species P. pardus and P. uncia. In addition, close association of Neofelis nebulosa to Panthera, the phylogenetic redefinition of Otocolobus manil within the domestic cat group, and the relatedness of Acinonyx jubatus and Puma concolor were all important findings in the resulting phylogenies. The potential utilities of nine different genes for phylogenetic resolution of closely related pantherine species were also evaluated, with special interest in that of the novel nuclear beta-fibrinogen intron 7. (c) 2005 Elsevier Inc. All rights reserved.

Relationship between COPD and polymorphisms of HOX-1 and mEPH in a Chinese population

Recent studies have proposed that susceptibility to chronic obstructive pulmonary disease (COPD) might be related with the polymorphisms of some genes encoding antioxidant enzymes, such as heme oxygenase-1 (HOX-1) and microsomal epoxide hydrolase (mEPH).

Height-depth (breadth) relationship of shells in the backwater oyster Crassostrea madrasensin (Preston) of the Cochin harbour

A study of the height-depth relation in the Indian backwater oyster Crassostrea madrasensis (Preston) was carried out. The plot of height against depth showed an exponential trend and a relationship of the form H = ADB. Plot of height against depth also showed larger deviations in height for oysters with greater depth. Analysis showed that variations in height do not result in corresponding variations in depth, particularly in oysters with increased height.

On the eye diameter-total length relationship of the Indian mackerel Rastrelliger kanagurta (Cuvier)

Results of studies of chemical, bacteriological and organoleptic quality of cured fish collected from four major curing centres along the Tamil Nadu coast are reported. Only 32.43% of the samples had moisture level below 35%, 0.9% had salt 25% and above. None of the samples showed acid insoluble ash below 1.5%. The main defects were unhygienic processing, inadequate salting, use of poor quality salt and incomplete drying. Recommendations for improvement of quality are given.

Length-weight and tail length-total length relationship in Panulirus homarus Linnaeus on the south-west coast of India

Length-weight relationships of Panulirus homarus caught from the Kanniyakumari coast was found to be W=0.000566 L super(2-50). The relationship between tail length and total length was also investigated and compared with that of Panulirus polyphagus. Same relationship did not hold good for the two sexes as in the case of P. polyphagus. For a given tail length, the head length, the total length and the weight appear to be relatively larger for females of small sizes of P. homarus.

Relationship between water, lipid and protein in the muscle, liver and gonad in a freshwater fish Puntius filamentosus (Val.)

Details are given of a study investigating the relationship between water, lipid, and protein in Puntius filamentosus. Percentage compositions in the muscle, liver and gonad of fish specimens from Lake Vellayani in India are given, showing the fluctuations which occur during maturation.

Length-weight relationship and relative condition factor in Daysciaena albida (Cuv.) and Gerres filamentosus (Cuv.)

The length-weight relationship of Daysciaena albida and Gerres filamentosus were calculated separately for indeterminants, mature males and mature females. The logarithmic regression equation obtained for D. albida - males: log w = -1.5055 + 2.8618 log l; females: log w = -0.9260 + 2.4089 log l; indeterminants: log w = -l.7188 + 3.0616 log l. The regression co-efficients between males and females, males and in determinants and female and in determinants showed significant differences. In G. filamentosus the relationship can be expressed as males: log w = -1.3224 + 2.8740 log 1; females: log w = -1.2874 + 2.8381 log l; indeterminants: log w = -0.8167 + 2.2558 log l. The difference in regression co-efficients between male and female are insignificant at 5% level whereas significant differences were observed between males and indeterminants and females and indeterminants. The relative condition factor (Kn) was calculated for the above two species. In D. albida the reasons for the fluctuations of Kn values can be attributed to both spawning cycle as well as feeding intensity whereas in G. filamentosus it synchronies mainly with spawning cycle.

Length-weight relationship of Tilapia mossambicus of Idukki Reservoir

The results of ten months study (September 1983 to July 1984) of the length-weight relationship of males and females of Tilapia mossambicus of the reservoir waters of Idukki Hydel Project show deviation from the cubic relationship of these two parameters. This is due to the retarded growth pattern of this exotic species in this oligotrophic habitat.

Is there a close relationship between synonymous codon bias and codon-anticodon binding strength in human genes?

Synonymous codon bias has been examined in 78 human genes (19967 codons) and measured by relative synonymous codon usage (RSCU). Relative frequencies of all kinds of dinucleotides in 2,3 or 3,4 codon positions have been calculated, and codon-anticodon bin

Relationship between diet composition and growth rate of the zoeal and mysis stages of Penaeus japonicus Bate

Diets containing Chaetoceros gracilis plus Artemia nauplii artificially prepared diet, Diet-B, and two commercial feeds Tapes and mysid meals, were fed to larvae of P. japonicus. Highest survival rate was obtained when larvae were fed with Diet-B. The results show that the early larval stages of P. japonicus can be reared on artificially prepared diets. Since the chemical composition of the diet is known, it can be used as supplemental data for larval feeding development and nutritional requirement studies for the early larval stages of Penaeus japonicus and/or other penaeids. Information is tabulated on feeds and feeding rates used, composition of the artificial diet, fatty acid composition of lipids of the different diets, and of the sterols of the different diets.