Demographic studies of extrasolar planets

Uncovering the demographics of extrasolar planets is crucial to understanding the processes of their formation and evolution. In this thesis, we present four studies that contribute to this end, three of which relate to NASA's Kepler mission, which has revolutionized the field of exoplanets in the last few years.

In the pre-Kepler study, we investigate a sample of exoplanet spin-orbit measurements---measurements of the inclination of a planet's orbit relative to the spin axis of its host star---to determine whether a dominant planet migration channel can be identified, and at what confidence. Applying methods of Bayesian model comparison to distinguish between the predictions of several different migration models, we find that the data strongly favor a two-mode migration scenario combining planet-planet scattering and disk migration over a single-mode Kozai migration scenario. While we test only the predictions of particular Kozai and scattering migration models in this work, these methods may be used to test the predictions of any other spin-orbit misaligning mechanism.

We then present two studies addressing astrophysical false positives in Kepler data. The Kepler mission has identified thousands of transiting planet candidates, and only relatively few have yet been dynamically confirmed as bona fide planets, with only a handful more even conceivably amenable to future dynamical confirmation. As a result, the ability to draw detailed conclusions about the diversity of exoplanet systems from Kepler detections relies critically on understanding the probability that any individual candidate might be a false positive. We show that a typical a priori false positive probability for a well-vetted Kepler candidate is only about 5-10%, enabling confidence in demographic studies that treat candidates as true planets. We also present a detailed procedure that can be used to securely and efficiently validate any individual transit candidate using detailed information of the signal's shape as well as follow-up observations, if available.

Finally, we calculate an empirical, non-parametric estimate of the shape of the radius distribution of small planets with periods less than 90 days orbiting cool (less than 4000K) dwarf stars in the Kepler catalog. This effort reveals several notable features of the distribution, in particular a maximum in the radius function around 1-1.25 Earth radii and a steep drop-off in the distribution larger than 2 Earth radii. Even more importantly, the methods presented in this work can be applied to a broader subsample of Kepler targets to understand how the radius function of planets changes across different types of host stars.

Beyond the blur: Construction and characterization of the first autonomous AO system and An AO survey of magnetar proper motions

Adaptive optics (AO) corrects distortions created by atmospheric turbulence and delivers diffraction-limited images on ground-based telescopes. The vastly improved spatial resolution and sensitivity has been utilized for studying everything from the magnetic fields of sunspots upto the internal dynamics of high-redshift galaxies. This thesis about AO science from small and large telescopes is divided into two parts: Robo-AO and magnetar kinematics.

In the first part, I discuss the construction and performance of the world’s first fully autonomous visible light AO system, Robo-AO, at the Palomar 60-inch telescope. Robo-AO operates extremely efficiently with an overhead < 50s, typically observing about 22 targets every hour. We have performed large AO programs observing a total of over 7,500 targets since May 2012. In the visible band, the images have a Strehl ratio of about 10% and achieve a contrast of upto 6 magnitudes at a separation of 1′′. The full-width at half maximum achieved is 110–130 milli-arcsecond. I describe how Robo-AO is used to constrain the evolutionary models of low-mass pre-main-sequence stars by measuring resolved spectral energy distributions of stellar multiples in the visible band, more than doubling the current sample. I conclude this part with a discussion of possible future improvements to the Robo-AO system.

In the second part, I describe a study of magnetar kinematics using high-resolution near-infrared (NIR) AO imaging from the 10-meter Keck II telescope. Measuring the proper motions of five magnetars with a precision of upto 0.7 milli-arcsecond/yr, we have more than tripled the previously known sample of magnetar proper motions and proved that magnetar kinematics are equivalent to those of radio pulsars. We conclusively showed that SGR 1900+14 and SGR 1806-20 were ejected from the stellar clusters with which they were traditionally associated. The inferred kinematic ages of these two magnetars are 6±1.8 kyr and 650±300 yr respectively. These ages are a factor of three to four times greater than their respective characteristic ages. The calculated braking index is close to unity as compared to three for the vacuum dipole model and 2.5-2.8 as measured for young pulsars. I conclude this section by describing a search for NIR counterparts of new magnetars and a future promise of polarimetric investigation of a magnetars’ NIR emission mechanism.

Dynamical stability of nascent neutron stars

This thesis presents a study of the dynamical stability of nascent neutron stars resulting from the accretion induced collapse of rapidly rotating white dwarfs.

Chapter 2 and part of Chapter 3 study the equilibrium models for these neutron stars. They are constructed by assuming that the neutron stars have the same masses, angular momenta, and specific angular momentum distributions as the pre-collapse white dwarfs. If the pre-collapse white dwarf is rapidly rotating, the collapsed object will contain a high density central core of size about 20 km, surrounded by a massive accretion torus extending to hundreds of kilometers from the rotation axis. The ratio of the rotational kinetic energy to gravitational binding energy, β, of these neutron stars is all found to be less than 0.27.

Chapter 3 studies the dynamical stability of these neutron stars by numerically evolving the linearized hydrodynamical equations. A dynamical bar-mode instability is observed when the β of the star is greater than the critical value β_d ≈ 0.25. It is expected that the unstable mode will persist until a substantial amount of angular momentum is carried away by gravitational radiation. The detectability of these sources is studied and it is estimated that LIGO II is unlikely to detect them unless the event rate is greater than 10^-6/year/galaxy.

All the calculations on the structure and stability of the neutron stars in Chapters 2 and 3 are carried out using Newtonian hydrodynamics and gravity. Chapter 4 studies the relativistic effects on the structure of these neutron stars. New techniques are developed and used to construct neutron star models to the first post-Newtonian (1PN) order. The structures of the 1PN models are qualitatively similar to the corresponding Newtonian models, but the values of β are somewhat smaller. The maximum β for these 1PN neutron stars is found to be 0.24, which is 8% smaller than the Newtonian result (0.26). However, relativistic effects will also change the critical value β_d. A detailed post-Newtonian stability analysis has yet to be carried out to study the relativistic effects on the dynamical stability of these neutron stars.

New Insights from Aperiodic Variability of Young Stars

Nearly all young stars are variable, with the variability traditionally divided into two classes: periodic variables and aperiodic or "irregular" variables. Periodic variables have been studied extensively, typically using periodograms, while aperiodic variables have received much less attention due to a lack of standard statistical tools. However, aperiodic variability can serve as a powerful probe of young star accretion physics and inner circumstellar disk structure. For my dissertation, I analyzed data from a large-scale, long-term survey of the nearby North America Nebula complex, using Palomar Transient Factory photometric time series collected on a nightly or every few night cadence over several years. This survey is the most thorough exploration of variability in a sample of thousands of young stars over time baselines of days to years, revealing a rich array of lightcurve shapes, amplitudes, and timescales.

I have constrained the timescale distribution of all young variables, periodic and aperiodic, on timescales from less than a day to ~100 days. I have shown that the distribution of timescales for aperiodic variables peaks at a few days, with relatively few (~15%) sources dominated by variability on tens of days or longer. My constraints on aperiodic timescale distributions are based on two new tools, magnitude- vs. time-difference (Δm-Δt) plots and peak-finding plots, for describing aperiodic lightcurves; this thesis provides simulations of their performance and presents recommendations on how to apply them to aperiodic signals in other time series data sets. In addition, I have measured the error introduced into colors or SEDs from combining photometry of variable sources taken at different epochs. These are the first quantitative results to be presented on the distributions in amplitude and time scale for young aperiodic variables, particularly those varying on timescales of weeks to months.

Front pages with contents of No. 45, 1987

Front cover. Information for supporters of the Charles Darwin Foundation. Contents.

Back pages of No. 45, 1987

Map of Galápagos. Medium Ground Finch (Geospiza fortis), Drawing by Godfrey Merlen.

Necessidades de orientação de enfermagem para o autocuidado visando a qualidade de vida de clientes em terapia de hemodiálise

Pressupondo que o conhecimento sobre a doença renal crônica (DRC) e seu tratamento, possibilita ao cliente entendimento e aceitação para conviver com esse agravo, favorecendo comportamentos de autocuidado, delimitou-se os problemas: Qual é a qualidade de vida de clientes com DRC submetidos à hemodiálise? Quais são as necessidades de orientação de enfermagem para o autocuidado desses clientes visando à promoção de sua qualidade de vida? Objetivos específicos: Identificar as características sóciodemográficas e nosológicas de clientes com DRC, em hemodiálise, associando às suas necessidades de orientação de enfermagem para o autocuidado; Identificar a qualidade de vida desses clientes, aplicando o questionário de Kidney Disease Quality of Life Short Form (KDQOL-SF); Relacionar as necessidades de orientação de enfermagem para o autocuidado com a qualidade de vida dos clientes com DRC em terapia de hemodiálise. Descreve-se como marco referencial a Teoria do Autocuidado de Orem, concepções de autocuidado e de qualidade de vida. Pesquisa descritiva, quantitativa, através da entrevista individual realizada na Unidade de Diálise da Enfermaria de Nefrologia do Hospital Universitário Pedro Ernesto da Universidade do Estado do Rio de Janeiro, no período de agosto de 2008 a maio de 2009. Foram sujeitos de pesquisa 43 clientes. Foram utilizados: formulário para caracterização da clientela e levantamento das necessidades de autocuidado e o questionário KDQOL-SF para mensurar a qualidade de vida dos sujeitos. Resultados: Os clientes com doença renal crônica em terapia de hemodiálise são, em sua maioria, do sexo masculino (55%) e mantém união estável (81%); situando-se 39,53%, na faixa etária de 45 a 65 anos e 79,07% na categoria de aposentados. 37,54% têm ensino fundamental. Quanto às características nosológicas, 74,42% possuem hipertensão arterial, encontrando-se 83,72% em hemodiálise, há menos de um ano. A qualidade de vida desses clientes, avaliada pelo KDQOL-SF, obteve os menores escores nas dimensões: limitações causadas por problemas da saúde física; condição de trabalho; limitações causadas por problemas da saúde emocional; capacidade funcional e sobrecarga imposta pela doença renal. Relacionando esse resultado com o obtido no questionário para avaliação das necessidades de orientação de enfermagem para o autocuidado tem-se: problemas da saúde física relacionado com terapia nutricional, ingestão de líquidos, complicações da hemodiálise, anticoagulação e prática de atividade física; relacionadas a problemas de saúde emocional tem-se a associação a grupos e a atividades de lazer; e relacionada à capacidade funcional e sobrecarga da doença renal tem-se a prática de atividade física. Conclui-se que a enfermagem, além de administrar a realização das sessões de hemodiálise, tem papel fundamental na educação à saúde dos clientes, familiares e/ou acompanhantes. O apoio do enfermeiro ao cliente no processo de enfrentamento e tratamento da DRC, contribui para que este adquira habilidade nas ações de autocuidado e consequentemente favoreça sua qualidade de vida.

Individual weight, development time and yield of different stages of Tropodiaptomus incognitus (Crustacea: Copepoda). [Translation from: Cahiers ORSTOM, Serie Hydrobiologie 4(1) 63-70, 1970. ]

Observations of individual weight, duration of development and production of different stages of Tropodiaptomus incognitus are presented. The study is based on data gathered from Lake Chad in 1968.

DNA-Mediated Charge Transport Devices for Protein Detection

Detection of biologically relevant targets, including small molecules, proteins, DNA, and RNA, is vital for fundamental research as well as clinical diagnostics. Sensors with biological elements provide a natural foundation for such devices because of the inherent recognition capabilities of biomolecules. Electrochemical DNA platforms are simple, sensitive, and do not require complex target labeling or expensive instrumentation. Sensitivity and specificity are added to DNA electrochemical platforms when the physical properties of DNA are harnessed. The inherent structure of DNA, with its stacked core of aromatic bases, enables DNA to act as a wire via DNA-mediated charge transport (DNA CT). DNA CT is not only robust over long molecular distances of at least 34 nm, but is also especially sensitive to anything that perturbs proper base stacking, including DNA mismatches, lesions, or DNA-binding proteins that distort the π-stack. Electrochemical sensors based on DNA CT have previously been used for single-nucleotide polymorphism detection, hybridization assays, and DNA-binding protein detection. Here, improvements to (i) the structure of DNA monolayers and (ii) the signal amplification with DNA CT platforms for improved sensitivity and detection are described.

First, improvements to the control over DNA monolayer formation are reported through the incorporation of copper-free click chemistry into DNA monolayer assembly. As opposed to conventional film formation involving the self-assembly of thiolated DNA, copper-free click chemistry enables DNA to be tethered to a pre-formed mixed alkylthiol monolayer. The total amount of DNA in the final film is directly related to the amount of azide in the underlying alkylthiol monolayer. DNA monolayers formed with this technique are significantly more homogeneous and lower density, with a larger amount of individual helices exposed to the analyte solution. With these improved monolayers, significantly more sensitive detection of the transcription factor TATA binding protein (TBP) is achieved.

Using low-density DNA monolayers, two-electrode DNA arrays were designed and fabricated to enable the placement of multiple DNA sequences onto a single underlying electrode. To pattern DNA onto the primary electrode surface of these arrays, a copper precatalyst for click chemistry was electrochemically activated at the secondary electrode. The location of the secondary electrode relative to the primary electrode enabled the patterning of up to four sequences of DNA onto a single electrode surface. As opposed to conventional electrochemical readout from the primary, DNA-modified electrode, a secondary microelectrode, coupled with electrocatalytic signal amplification, enables more sensitive detection with spatial resolution on the DNA array electrode surface. Using this two-electrode platform, arrays have been formed that facilitate differentiation between well-matched and mismatched sequences, detection of transcription factors, and sequence-selective DNA hybridization, all with the incorporation of internal controls.

For effective clinical detection, the two working electrode platform was multiplexed to contain two complementary arrays, each with fifteen electrodes. This platform, coupled with low density DNA monolayers and electrocatalysis with readout from a secondary electrode, enabled even more sensitive detection from especially small volumes (4 μL per well). This multiplexed platform has enabled the simultaneous detection of two transcription factors, TBP and CopG, with surface dissociation constants comparable to their solution dissociation constants.

With the sensitivity and selectivity obtained from the multiplexed, two working electrode array, an electrochemical signal-on assay for activity of the human methyltransferase DNMT1 was incorporated. DNMT1 is the most abundant human methyltransferase, and its aberrant methylation has been linked to the development of cancer. However, current methods to monitor methyltransferase activity are either ineffective with crude samples or are impractical to develop for clinical applications due to a reliance on radioactivity. Electrochemical detection of methyltransferase activity, in contrast, circumvents these issues. The signal-on detection assay translates methylation events into electrochemical signals via a methylation-specific restriction enzyme. Using the two working electrode platform combined with this assay, DNMT1 activity from tumor and healthy adjacent tissue lysate were evaluated. Our electrochemical measurements revealed significant differences in methyltransferase activity between tumor tissue and healthy adjacent tissue.

As differential activity was observed between colorectal tumor tissue and healthy adjacent tissue, ten tumor sets were subsequently analyzed for DNMT1 activity both electrochemically and by tritium incorporation. These results were compared to expression levels of DNMT1, measured by qPCR, and total DNMT1 protein content, measured by Western blot. The only trend detected was that hyperactivity was observed in the tumor samples as compared to the healthy adjacent tissue when measured electrochemically. These advances in DNA CT-based platforms have propelled this class of sensors from the purely academic realm into the realm of clinically relevant detection.

Histochemical data on the skin mucous cells during the development of the trout [Translation from: Bollettino della Societa Italiana di Biologia Sperimentale 45, 1273-1276, 1969]

In the skin of Salmo irideus the production of mucus is due to one type of cell specialized as a mucus cell. The histochemical research presented in this paper describes the mucous cells of Salmo irideus and demonstrates observable variation in such cells during the fish's development.

Individual growth and seasonal cycle of Daphnia middendorffiana in an Alpine lake [Translation from: Memorie dell'Istituto Italiano di Idrobiologia Dott.Marco de Marchi 26 41-83, 1970]

The problem of the peculiar reproductive biology of the cladoceran Daphnia middendorffiana is investigated from a cytological viewpoint, and by direct observation the meiotic phenomena of the eggs both subitaneous and resting is studied. and during maturation, the true mechanism of the succession of reproductive phases of different ecological significance. Samples were collected in the Italian Alpine Lake of Campo 4°.

Práticas contraceptivas e gestão da heterossexualidade: agência individual, contextos relacionais e gênero.

A tese versa sobre as grandes questões relativas à contracepção no Brasil. Integra um esforço por analisar condutas referentes à contracepção, segundo lógicas que priorizam a situacionalidade e a relacionalidade de tais fenômenos. As estratégias para gerir a fecundidade são constitutivas da sexualidade heterossexual. Mulheres e homens podem usar ou não contracepção; as razões dessa conduta extrapolam aspectos concernentes a informação e acesso. Busca-se compreender as práticas contraceptivas a partir do processo do aprendizado das lógicas relacionais e de gênero, em diferentes momentos dos percursos biográficos: o início da trajetória afetivo-sexual, os contextos de irrupção de uma gravidez e o encerramento da potencialidade reprodutiva, por meio da esterilização contraceptiva. Este compósito demandou a utilização de materiais empíricos distintos para a construção e análise das etapas eleitas dos percursos biográficos. Enfoca-se, primeiramente, o momento de passagem à sexualidade com parceiro. Problematiza-se a ideia de relaxamento das práticas contraceptivas, a partir da iniciação sexual, concepção corrente na literatura nacional em função do decréscimo de uso de preservativo em relações sexuais posteriores. Aborda-se, em seguida, as atitudes e as questões presentes no processo de construção da prática contraceptiva, no momento em que a vida sexual se torna regular. A proposição da perspectiva da gestão contraceptiva sublinha as posições dos protagonistas, marcadas pelo gênero. Por último, analisa-se as circunstâncias biográficas e os cenários relacionais da esterilização contraceptiva, a qual emerge como uma estratégia de estabilização ou de consolidação de um percurso contraceptivo/reprodutivo. O debate em torno da contracepção no Brasil apresenta a tendência a enfatizar a determinação social para explicar as gestações imprevistas. Contudo, salienta-se, com base em uma literatura crítica, as dimensões de agência individual, ainda que circunscritas por um campo delimitado de possibilidades.

Avoided temperatures by young fish [Translation from: Informatsionnyi Byulleten Biologiya Vnutrennikh Vod No.50, 45-47, 1981]

Directed local changes of water temperature for the purpose of controlling the behaviour of fish are based on the knowledge of the characteristics of seasonal-age dynamics of their thermoadaptation possibilities. These possibilities are still inadequately studied especially in relation to avoided temperatures. By the authors the attempt was made to determine zones of avoided temperatures for the young of five species of fish (bream, roach, blue bream, perch, peled) in the summer period of the year, and also to assess the influence on them of additional factors, in particular mechanical driving. In parallel in two-fold repetition were conducted experiments on the determination of selected, shock and lethal temperatures of these fish. Experiments were conducted with fish, caught in the littoral of the Rybinsk reservoir.

Influence of starvation on selected temperatures in the young of bream, roach and perch [Translation from: Informatsionnyi Byulleten Biologiya Vnutrennikh Vod No.50, 45-47, 1981]

Works devoted to the influence of starvation on temperature selection by fishes are few and their conclusions are contradictory. This study determined the influence of brief, up to 14 days, starvation on temperature selection by young fishes. The experiments were carried out in August-September 1976 on fingerling bream (Abramis brama L.), roach (Rutilus rutilus L.) and perch (Perca fluviatilis L.) with body lengths of 3-5 cm and weight 0.5-1.2 g. The young fish were caught in the littoral by seine-nets or small drag-nets. Immediately after catching the fish they were put in acclimatization boxes. The period of acclimatization did not exceed 2 days for bream and roach at a temperature of 20 °C and 6 days for perch at 17 °C. Before the start of the experiment and for the first 10 days of the experiment the fish were fed with oligochaetes, earthworms and daphnia, after that feeding discontinued. At the end of a 10-14 day period the giving of food was resumed. The study concludes that the experiments have shown that in the summer season the factor of starvation significantly changes the reaction to the gradient of temperature in young cyprihids - roach and bream.

Observation and interpretation of tectonic strain release mechanisms

In four chapters various aspects of earthquake source are studied.

Chapter I

Surface displacements that followed the Parkfield, 1966, earthquakes were measured for two years with six small-scale geodetic networks straddling the fault trace. The logarithmic rate and the periodic nature of the creep displacement recorded on a strain meter made it possible to predict creep episodes on the San Andreas fault. Some individual earthquakes were related directly to surface displacement, while in general, slow creep and aftershock activity were found to occur independently. The Parkfield earthquake is interpreted as a buried dislocation.

Chapter II

The source parameters of earthquakes between magnitude 1 and 6 were studied using field observations, fault plane solutions, and surface wave and S-wave spectral analysis. The seismic moment, M_O, was found to be related to local magnitude, M_L, by log M_O = 1.7 M_L + 15.1. The source length vs magnitude relation for the San Andreas system found to be: M_L = 1.9 log L - 6.7. The surface wave envelope parameter AR gives the moment according to log M_O = log AR₃₀₀ + 30.1, and the stress drop, τ, was found to be related to the magnitude by τ = 0.54 M - 2.58. The relation between surface wave magnitude M_S and M_L is proposed to be M_S = 1.7 M_L - 4.1. It is proposed to estimate the relative stress level (and possibly the strength) of a source-region by the amplitude ratio of high-frequency to low-frequency waves. An apparent stress map for Southern California is presented.

Chapter III

Seismic triggering and seismic shaking are proposed as two closely related mechanisms of strain release which explain observations of the character of the P wave generated by the Alaskan earthquake of 1964, and distant fault slippage observed after the Borrego Mountain, California earthquake of 1968. The Alaska, 1964, earthquake is shown to be adequately described as a series of individual rupture events. The first of these events had a body wave magnitude of 6.6 and is considered to have initiated or triggered the whole sequence. The propagation velocity of the disturbance is estimated to be 3.5 km/sec. On the basis of circumstantial evidence it is proposed that the Borrego Mountain, 1968, earthquake caused release of tectonic strain along three active faults at distances of 45 to 75 km from the epicenter. It is suggested that this mechanism of strain release is best described as "seismic shaking."

Chapter IV

The changes of apparent stress with depth are studied in the South American deep seismic zone. For shallow earthquakes the apparent stress is 20 bars on the average, the same as for earthquakes in the Aleutians and on Oceanic Ridges. At depths between 50 and 150 km the apparent stresses are relatively high, approximately 380 bars, and around 600 km depth they are again near 20 bars. The seismic efficiency is estimated to be 0.1. This suggests that the true stress is obtained by multiplying the apparent stress by ten. The variation of apparent stress with depth is explained in terms of the hypothesis of ocean floor consumption.