Amino acid substitutions in σ1 and μ1 outer capsid proteins are selected during mammalian reovirus adaptation to Vero cells

Establishment of viral persistence in cell culture has previously led to the selection of mammalian reovirus mutants, although very few of those have been characterized in details. In the present study, reovirus was adapted to Vero cells that, in contrast to classically-used L929 cells, are inefficient in supporting the early steps of reovirus uncoating and are also unable to produce interferon as an antiviral response once infection occurs. The Vero cell-adapted reovirus exhibits amino acids substitutions in both the σ1 and μ1 proteins. This contrasts with uncoating mutants from persistently-infected L929 cells, and various other cell types, that generally harbor amino acids substitutions in the σ3 outer capsid protein. The Vero cell-adapted virus remained sensitive to an inhibitor of lysosomal proteases; furthermore, in the absence of selective pressure for its maintenance, t he virus has partially lost its ability to resist interferon. The positions of the amino acids substitutions on the known protein structures suggest an effect on binding of the viral σ1 protein to the cell surface and on μ1 disassembly from the outer capsid.

Herpesviruses including novel gammaherpesviruses are widespread among phocid seal species in Canada.

Little is known about herpesviruses in Canadian pinnipeds. We measured prevalence of antibodies to herpesviruses in the sera from Canadian phocid seals by an indirect enzyme-linked immunosorbent assay. Wild harbor seals (Phoca vitulina) and captive harbor seals were positive for antibodies to Phocid herpesvirus 1 (PhoHV-1) at prevalences of 91% and 100%, respectively. Sera from wild hooded seals (Cystophora cristata), harp seals (Pagophilus groenlandica), and grey seals (Halichoerus grypus) were positive for antibodies to PhoHV-1 antigenically related herpesvirus antigens at 73%, 79%, and 96%, respectively. We isolated new herpesviruses in cell culture from two hunter-harvested ringed seals (Pusa hispida) in poor body condition from Ulukhaktok, Northwest Territories, Canada; one lethargic hooded seal from the St. Lawrence Estuary, Québec, Canada; and one captive, asymptomatic harp seal from the Magdalen Islands, Québec. Partial sequencing of the herpesvirus DNA polymerase gene revealed that all four virus isolates were closely related to PhoHV-2, a member of the Gammaherpesvirinae subfamily, with nucleotide similarity ranging between 92.8% and 95.3%. The new seal herpesviruses were genetically related to other known pinniped herpesviruses, such as PhoHV-1, Otariid herpesvirus 3, Hawaiian monk (Monachus schauinslandi) seal herpesvirus, and Phocid herpesvirus 5 with 47–48%, 55%, 77%, and 70–77% nucleotide similarities, respectively. The harp seal herpesvirus and both ringed seal herpesviruses were almost identical to each other, whereas the hooded seal herpesvirus was genetically different from the three others (92.8% nucleotide similarity), indicating detection of at least two novel seal herpesviruses. These findings are the first isolation, partial genome sequencing, and identification of seal gammaherpesviruses in three species of Canadian phocid seals; two species of which were suspected of exposure to one or more antigenically related herpesviruses based on serologic analyses.

Discrete Time Inventory Models with/without Positive Service Time

In everyday life different flows of customers to avail some service facility or other at some service station are experienced. In some of these situations, congestion of items arriving for service, because an item cannot be serviced Immediately on arrival, is unavoidable. A queuing system can be described as customers arriving for service, waiting for service if it is not immediate, and if having waited for service, leaving the system after being served. Examples Include shoppers waiting in front of checkout stands in a supermarket, Programs waiting to be processed by a digital computer, ships in the harbor Waiting to be unloaded, persons waiting at railway booking office etc. A queuing system is specified completely by the following characteristics: input or arrival pattern, service pattern, number of service channels, System capacity, queue discipline and number of service stages. The ultimate objective of solving queuing models is to determine the characteristics that measure the performance of the system

Investigations on Phaeocystis sp., A Harmful Bloom- Forming Alga Isolated from Cochin Estuary

Considering the importance of diversity of micro algae in our ecosystem and new invasion of many organisms, an attempt was made to monitor the Cochin estuary along the south west coast of India for the qualitative distribution of phytoplankton and to study the growth kinetics and allelopathic effect of the phaeocystis sp. Isolated from the cochin estuary. Phaeocystis blooms are common only in high latitude environments and they rarely occur in low latitude environments such as tropics and subtropics. As phaeocystis is grouped under harmful alga ,in the present study the factors causing the blooms formation in the ecosystem. The nutrient concentration of the water body along with other physiochemical parameters that includes temperature salinity and ph play an important role in triggering the bloom of phaeocystis .The phaeocystis harbor specific bacterial flora associated with it and they exert an important role in the growth ,haemolytic activity and the bloom phases of the alga. The harmful alga mainly depends on the production of alleopathic compounds for the establishment of bloom in the marine environments .These physiological properties of the phaecystis were considered for the study, along with the role of nutrients in the allelopathic and hemolytic activity

Bioremediation of Hydrocarbons by Lysinibacillus fusiformis BTTS10

There exists a need for potential microorganism that could facilitate effective bioremediation of crude oil pollutants in the environment. Hence it was desired to isolate a potential bacterium from marine sediment, which often experiences oil pollution and develop a bioprocess for crude oil biodegradation. In the present study the sediment deposits in the beach of Munakkal, Trichur dist, Kerala, collected immediately after the major event Tsunami in 2004 was collected and analyzed by enrichment culture technique towards isolation of potential strains that could degrade crude oil and its fractions. From the results obtained it was found that the sediment deposits harbor several bacteria with potential for degrading hydrocarbons. However, among the strains obtained, isolate no. BTTS 10 showed capabilities for utilizing both alkanes and aromatic hydrocarbons and hence the same was selected for further studies.

Studies on siltation in cochin harbour dynamics of suspensate

The present study is an attempt to elucidate the sedimentation regime of the harbour and its environment. These investigations include detailed studies on the hydrography' of the harbour region of the estuary, estuarine circulation, spatial and temporal variations of the amount and texture of bottom sediments. A note on the dredging is also given in the Annexure .The thesis is presented in six chapters

“Studies on glucose tolerant β-glucosidases from a novel Byssochlamys fulva and their applications in biomass to ethanol conversion”

Beta-glucosidases are critical enzymes in biomass hydrolysis process and is important in creating highly efficient enzyme cocktails for the bio-ethanol industry. Among the two strategies proposed for overcoming the glucose inhibition of commercial cellulases, one is to use heavy dose of BGL in the enzyme blends and the second is to do simultaneous saccharification and fermentation where glucose is converted to alcohol as soon as it is being generated. While the former needs extremely high quantities of enzyme, the latter is inefficient since the conditions for hydrolysis and fermentation are different. This makes the process technically challenging and also in this case, the alcohol generation is lesser, making its recovery difficult. A third option is to use glucose tolerant β-glucosidases which can work at elevated glucose concentrations. However, there are very few reports on such enzymes from microbial sources especially filamentous fungi which can be cultivated on cheap biomass as raw material. There has been very less number of studies directed at this, though there is every possibility that filamentous fungi that are efficient degraders of biomass may harbor such enzymes. The study therefore aimed at isolating a fungus capable of secreting glucose tolerant β- glucosidase enzyme. Production, characterization of β-glucosidases and application of BGL for bioethanol production were attempted.

“Effect of spice oleoresins in microbial decontamination and their potential application in quality stabilization of Tuna (Euthynnus affinis) during storage”

Unprocessed seafood harbor high number of bacteria, hence are more prone to spoilage. In this circumstance, the use of spice in fish for reduction of microorganism can play an important role in seafood processing. Many essential oils from herbs and spices are used widely in the food, health and personal care industries and are classified as GRAS (Generally regarded as safe) substances or are permitted food additives. A large number of these compounds have been the subject of extensive toxicological scrutiny. However, their principal function is to impart desirable flavours and aromas and not necessarily to act as antimicrobial agents. Given the high flavour and aroma impact to plant essential oils, the future for using these compound as food preservatives lies in the careful selection and evaluation of their efficacy at low concentrations but in combination with other chemical preservatives or preservation processes. For this reason they are worth of study alone or in combination with processing methods in order to establish if they could extend the shelf-life of foods. In this study, the effect of the spices, clove, turmeric, cardamom, oregano, rosemary and garlic in controlling the spoilage and pathogenic bacteria is investigated. Their effect on biogenic amine formation in tuna especially, histamine, as a result of bacterial control is also studied in detail. The contribution of spice oleoresin in the sensory and textural parameters is investigated using textural profile analysis and sensory panel. Finally, the potential of spices in quality stabilization and in increasing the shelf–life of tuna during frozen storage is analysed

Corrosion Behaviour Of Brass In The Vembanad Estuary, India

Corrosion characteristics of brass panels were investigated in the Vembanad estuarine water (Cochin Harbor), India over a period of one year. The corrosion rate of brass samples during exposure was determined by gravimetric method and fouling on panels was assessed, exposure-wise, in terms of biomass. Corrosion products were identified by X-Ray diffraction. The results of the study were discussed in the light of the seawater characteristics

Interferón gamma en el manejo de la enfermedad granulomatosa crónica en el paciente pediátrico

Antecedentes: La enfermedad granulomatosa crónica aumenta el riesgo de infecciones. El interferón gamma se ha venido utilizando como parte del tratamiento; sin embargo, su eficacia no ha sido explorada por una revisión sistemática. Objetivo: Determinar y analizar la eficacia del uso del interferón gamma en el manejo de pacientes en edad pediátrica con diagnóstico de enfermedad granulomatosa crónica. Metodología: Se realizó una revisión sistemática de la literatura. La búsqueda se hizo en cuatro bases de datos y un registro público de ensayos clínicos. Se realizó un enfoque cualitativo y cuantitativo. Para variables cualitativas se emplearon como indicadores el riesgo relativo y para las cuantitativas la diferencia del promedio. Resultados: Se incluyeron tres estudios, dos de ellos estudios no aleatorizados. Un solo ensayo clínico de buena calidad mostró evidencia sobre la utilidad del uso del interferón en la reducción de la infección severa. Conclusión: Es posible que el uso del interferón gamma se relacione con mejoría de varios desenlaces clínicos del paciente. Es necesario realizar más ensayos clínicos controlados de buena calidad que permitan explorar la eficacia del tratamiento en esta indicación. Palabras clave: Enfermedad granulomatosa crónica, interferón gamma, revisión sistemática como tópico.

Análisis operativo de los principales puertos del litoral Pacífico suramericano

Este trabajo se centra en las oportunidades que representan para Colombia en términos de infraestructura y competitividad portuaria frente a los pares latinoamericanos con puertos en el Pacífico. Así, el análisis se centra en la situación actual del puerto más representativo del país en esta costa, Puerto de Buenaventura, con respecto a la situación que presentan los terminales más avanzados de este litoral como son los Puertos del Callao en Perú y de Valparaíso en Chile. De la misma forma, se aborda el contexto económico de cada país identificando claramente las características mercantiles e industriales, que de la mano con sus políticas comerciales, dan como resultado el avance o retroceso de sus puertos. Estas terminales son las que finalmente determinaran si un país está en condición de participar activamente el comercio internacional y el nivel de preparación para afrontar el mundo globalizado. Por último, se busca determinar los puntos a favor y las deficiencias de los puertos colombianos frente a los otros 2 en cuestión para determinar qué tan lejos está el país de los puertos más grandes, eficientes y modernos del mundo, y las recomendaciones a seguir para convertirse en puertos dinámicos y productivos que solo traigan beneficios a Colombia.

Papel de la Organización de Naciones Unidas ONU (MINUGUA) en el proceso de reconstrucción posconflicto guatemalteco en materia de justicia transicional (1994-2004). Un estado del arte

Estado del arte que recopila pronunciamientos de diversos autores sobre el papel de la Organización de Naciones Unidas, específicamente la Misión MINUGUA, en el proceso de reconstrucción posconflicto en Guatemala comprendido entre el año 1994 y 2004. Se basa en algunas dimensiones de la democratización como son el Estado de Derecho, la democracia representativa, la preeminencia del poder civil, y el fortalecimiento de la cultura democrática. Así mismo, tiene en cuenta los elementos de la justicia transicional, a saber: verdad, justicia y reparación.

Incidencia de la política de sol naciente surcoreana en las relaciones políticas bilaterales entre Corea del Norte y Corea del Sur. Periodo 2000 al 2008

Las relaciones políticas bilaterales entre la República Popular Democrática de Corea (Corea del Norte) y la República de Corea (Corea del Sur) se resumen en un constructo social de desconfianza y enemistad, remanente de la Guerra Fría, que ha puesto en riesgo la seguridad del noreste asiático. La ausencia de interacción y la necesidad de mediación por parte de otros actores, parecían la característica latente hasta la gestión e implementación de la Política de Sol Naciente surcoreana, la cual se plantea con la pretensión de alcanzar la reunificación nacional en la península, a partir de la reconciliación y compromiso entre las dos Coreas. Desde la perspectiva constructivista de las Relaciones Internacionales, la reunificación nacional implica la reconsideración de una identidad colectiva coreana, capaz de transformar las identidades irreconciliables precedentes, heredadas del tutelaje de la Unión Soviética y los Estados Unidos; la Guerra de Corea y la reinterpretación de la primera identidad colectiva de la Nación coreana unida.

El problema de conceptualización del terrorismo dentro de la disciplina de las Relaciones Internacionales: Un análisis desde la perspectiva histórico conceptual

Los hechos ocurridos durante el 11 de septiembre de 2001 se constituyeron como un momento fundamental en los intentos de conceptualización del terrorismo internacional dentro de la disciplina de las Relaciones Internacionales. A raíz del 9/11 tuvo lugar la resemantización del concepto de terrorismo internacional en función del terrorismo religioso y del fundamentalismo islámico. Lo anterior, marco una ruptura en el campo de experiencia y en el horizonte de expectativas del concepto mismo, pues este último adquirió un nuevo uso discursivo, y por ende, político. Por eso, ante la necesidad de emprender un análisis discursivo de los usos del concepto de terrorismo internacional, se evidencia cómo al estar inmersos en determinados juegos del lenguaje, el uso discursivo de este concepto termina por convertirse en una herramienta de acción política que promueve una forma de vida.

Enfoque del paciente con sospecha de neuroinfección en urgencias

Las infecciones del sistema nervioso son importantes fuentes de morbilidad y mortalidad en el mundo, debido a diferentes factores como son el amplio uso de antibióticos que aunque contribuyen con éxito al manejo de infecciones, pero el mal uso por automedicación o tratamientos incompletos favorecen la emergencia de organismos resistentes y la existencia de “mimos infecciosos” que incluyen el síndrome de reconstitución inflamatoria (IRIS). Adicionalmente el crecimiento de las poblaciones inmunocomprometidas por el síndrome de inmunodeficiencia adquirida (SIDA) y por tratamientos agresivos para trasplante sólido o hematopoyético han mejorado la sobrevida de diferentes tipos de malignidades y alteraciones reumatológicas pero son poblaciones que tienen más susceptibilidad a contraer infecciones y encefalitis mediadas inmunológicamente, como son la encefalomielitis diseminada aguda (ADEM) o la encefalitis contra el receptor de N-metil-D aspartato (NMDA).