A simple practical method for bulk and rapid extraction of free-living nematodes from marine and estuarine sediments

A simple, rapid method is described for the extraction of large numbers of free-living nematodes from estuarine sediments. This method does not physically or chemically alter or damage the nematodes, but instead relies on their downward movement through a filtering layer of double ply tissue paper and into aerated water-filled trays. Seven trials each with 10 trays kept at 25degreesC for an initial period of 24 h yielded 3985 live nematodes l(-1) (+/-511.5 standard deviation) of estuarine sediment, free of sediment and with minimal debris. Time effects were statistically significantly different, with the same 10 trays yielding another 1259 nematodes l(-1) (+/-413.4) when kept for a second period of 24 h at the same temperature. Temperature effects were also significant, and 7 trials each with 10 trays kept for 24 h at 20-21degreesC, produced a lower yield of 2160 nematodes l(-1) (+/-532.7) of sediment. The method is expected to be of use in nematode extractions from both estuarine and marine sediments.

Moravecia australiensis n. g., n. sp (Dracunculoidea : Guyanemidae) from the gills of the green porcupine fish Tragulichthys jaculiferus (Cuvier) in Australia

A new dracunculoid genus and species, Moravecia australiensis, is described from gill-filaments of the green porcupine fish Tragulichthys jaculiferus (Cuvier) (Tetraodontiformes: Diodontidae) from Moreton Bay, Queensland, Australia. Abundant mobile larvae and a few adult males with females occurred in the gill-filament between the epithelial basement membrane and efferent artery. Gills of all 69 fish examined contained larvae. Eleven harboured adult nematodes of a previously undescribed species belonging to the family Guyanemidae. The new species is placed within a newly proposed genus because it differs from the four existing genera in the family in possessing fine cuticular transverse striations, two forward protruding cephalic elevations, a circumoral elevation, a small triangular mouth surrounded by six cephalic papillae arranged in two lateral clusters of three each and a pair of large lateral amphids. Males have two pairs of pedunculate caudal papillae supporting the caudal alae. A key to the genera of the Guyanemidae is presented.

Endoparasite communities of five fish species (Labridae : Cheilininae) from Lizard Island: how important is the ecology and phylogeny of the hosts?

The parasite community of animals is generally influenced by host physiology, ecology, and phylogeny. Therefore, sympatric and phylogenetically related hosts with similar ecologies should have similar parasite communities. To test this hypothesis we surveyed the endoparasites of 5 closely related cheilinine fishes (Labridae) from the Great Barrier Reef. They were Cheilinus chlorounts, C. trilobatus, C. fasciatils, Epibulus insidiator and OxYcheilinus diagrainnia. VVe examined the relationship between parasitological variables (richness, abundance and diversity) and host characteristics (bodv weight, diet and phuylogeny). The 5 fishes had 31 parasite species with 9-18 parasite species per fish species. Cestode larvae (mostly Tetraphyllidea) were the most abundant and prevalent parasites followed by nematodes and digeneans. Parasites, body size and diet of hosts differed between fish species. In general, body weight, diet and host phylogeny each explained some of the variation in richness and composition of parasites among the fishes. The 2 most closely related species, Cheilinus chlorourus and C. trilobatus, had broadly similar parasites but the Other fish species differed significantly in all variables. However, there was no all -encompassing pattern. This may, be because different lineages of parasites may react differently to ecological variables. We also argue that adult parasites may respond principally to host diet. In contrast, larval parasite composition may respond both to host diet and predator-prey interactions because this is the path by which many, parasites complete their life-cycles. Finally, variation in parasite phylogeny and parasite life-cycles among hosts likely increase the complexity of the system making it difficult to find all-encompassing patterns between host characteristics and parasites, particularly when all the species in rich parasite communities are considered.

Developing performance measures of mangrove wetlands using simulation models of hydrology, nutrient biogeochemistry, and community dynamics

The goal of mangrove restoration projects should be to improve community structure and ecosystem function of degraded coastal landscapes. This requires the ability to forecast how mangrove structure and function will respond to prescribed changes in site conditions including hydrology, topography, and geophysical energies. There are global, regional, and local factors that can explain gradients of regulators (e.g., salinity, sulfides), resources (nutrients, light, water), and hydroperiod (frequency, duration of flooding) that collectively account for stressors that result in diverse patterns of mangrove properties across a variety of environmental settings. Simulation models of hydrology, nutrient biogeochemistry, and vegetation dynamics have been developed to forecast patterns in mangroves in the Florida Coastal Everglades. These models provide insight to mangrove response to specific restoration alternatives, testing causal mechanisms of system degradation. We propose that these models can also assist in selecting performance measures for monitoring programs that evaluate project effectiveness. This selection process in turn improves model development and calibration for forecasting mangrove response to restoration alternatives. Hydrologic performance measures include soil regulators, particularly soil salinity, surface topography of mangrove landscape, and hydroperiod, including both the frequency and duration of flooding. Estuarine performance measures should include salinity of the bay, tidal amplitude, and conditions of fresh water discharge (included in the salinity value). The most important performance measures from the mangrove biogeochemistry model should include soil resources (bulk density, total nitrogen, and phosphorus) and soil accretion. Mangrove ecology performance measures should include forest dimension analysis (transects and/or plots), sapling recruitment, leaf area index, and faunal relationships. Estuarine ecology performance measures should include the habitat function of mangroves, which can be evaluated with growth rate of key species, habitat suitability analysis, isotope abundance of indicator species, and bird census. The list of performance measures can be modified according to the model output that is used to define the scientific goals during the restoration planning process that reflect specific goals of the project.

Compilation of growth rate data for marine pelagic organisms

The metabolic rate of organisms may either be viewed as a basic property from which other vital rates and many ecological patterns emerge and that follows a universal allometric mass scaling law; or it may be considered a property of the organism that emerges as a result of the organism's adaptation to the environment, with consequently less universal mass scaling properties. Data on body mass, maximum ingestion and clearance rates, respiration rates and maximum growth rates of animals living in the ocean epipelagic were compiled from the literature, mainly from original papers but also from previous compilations by other authors. Data were read from tables or digitized from graphs. Only measurements made on individuals of know size, or groups of individuals of similar and known size were included. We show that clearance and respiration rates have life-form-dependent allometries that have similar scaling but different elevations, such that the mass-specific rates converge on a rather narrow size-independent range. In contrast, ingestion and growth rates follow a near-universal taxa-independent ~3/4 mass scaling power law. We argue that the declining mass-specific clearance rates with size within taxa is related to the inherent decrease in feeding efficiency of any particular feeding mode. The transitions between feeding mode and simultaneous transitions in clearance and respiration rates may then represent adaptations to the food environment and be the result of the optimization of tradeoffs that allow sufficient feeding and growth rates to balance mortality.

(Tables 1, 3) Details of Agassiz trawl stations and numbers of specimens per macro- and megazoobenthic taxon collected during POLARSTERN cruise ANT-XXII/3 (ANDEEP III)

The assemblages inhabiting the continental shelf around Antarctica are known to be very patchy, in large part due to deep iceberg impacts. The present study shows that richness and abundance of much deeper benthos, at slope and abyssal depths, also vary greatly in the Southern and South Atlantic oceans. On the ANDEEP III expedition, we deployed 16 Agassiz trawls to sample the zoobenthos at depths from 1055 to 4930 m across the northern Weddell Sea and two South Atlantic basins. A total of 5933 specimens, belonging to 44 higher taxonomic groups, were collected. Overall the most frequent taxa were Ophiuroidea, Bivalvia, Polychaeta and Asteroidea, and the most abundant taxa were Malacostraca, Polychaeta and Bivalvia. Species richness per station varied from 6 to 148. The taxonomic composition of assemblages, based on relative taxon richness, varied considerably between sites but showed no relation to depth. The former three most abundant taxa accounted for 10-30% each of all taxa present. Standardised abundances based on trawl catches varied between 1 and 252 individuals per 1000 m2. Abundance significantly decreased with increasing depth, and assemblages showed high patchiness in their distribution. Cluster analysis based on relative abundance showed changes of community structure that were not linked to depth, area, sediment grain size or temperature. Generally abundances of zoobenthos in the abyssal Weddell Sea are lower than shelf abundances by several orders of magnitude.

Physical oceanography, sea-bed photographs and videos of benthos from the Weddell Sea taken with remote operated vehicle CHEROKEE during POLARSTERN cruise ANT-XXIII/8

The marine ecosystem on the eastern shelf of the Antarctic Peninsula was surveyed 5 and 12 years after the climate-induced collapse of the Larsen A and B ice shelves. An impoverished benthic fauna was discovered, that included deep-sea species presumed to be remnants from ice-covered conditions. The current structure of various ecosystem components appears to result from extremely different response rates to the change from an oligotrophic sub-ice-shelf ecosystem to a productive shelf ecosystem. Meiobenthic communities remained impoverished only inside the embayments. On local scales, macro- and mega-epibenthic diversity was generally low, with pioneer species and typical Antarctic megabenthic shelf species interspersed. Antarctic Minke whales and seals utilised the Larsen A/B area to feed on presumably newly established krill and pelagic fish biomass. Ecosystem impacts also extended well beyond the zone of ice-shelf collapse, with areas of high benthic disturbance resulting from scour by icebergs discharged from the Larsen embayments.

Data on the biogeochemical cycle of methane in the ocean

Geological, mineralogical and microbiological aspects of the methane cycle in water and sediments of different areas in the oceans are under consideration in the monograph. Original and published estimations of formation- and oxidation rates of methane with use of radioisotope and isotopic methods are given. The role of aerobic and anaerobic microbial oxidation of methane in production of organic matter and in formation of authigenic carbonates is considered. Particular attention is paid to processes of methane transformation in areas of its intensive input to the water column from deep-sea hydrothermal sources, mud volcanoes, and cold methane seeps.

Weighted mean depth of zooplankton measured during various cruises to the Baltic Sea

The Baltic Sea is the largest brackish water area of the world. On the basis of the data from 16 cruises, we show the seasonal and vertical distribution patterns of the appendicularians Fritillaria borealis, Oikopleura dioica and the cyclopoid copepod Oithona similis, in the highly stratified Bornholm Basin. These species live at least temporarily below the permanent halocline and use different life strategies to cope with the brackish environment. The cold-water species F. borealis is abundant in the upper layers of the water column before the thermocline develops. With the formation of the thermocline abundance decreases and the specimens outlast higher temperatures below the halocline. Distribution and strategy suggest that F. borealis might be a glacial relict species in the Baltic Sea. Although Oikopleura dioica is only abundant during summer, O. similis is present all year round. Both species have in common that their vertical distribution is restricted to the waters below the halocline, most likely due to their requirements of higher salinities. We argue that the observed strategies are determined by ecophysiological constraints and life history traits. These species share an omnivorous feeding behaviour and the capability to utilise a spectra of small particles as food. As phytoplankton concentration is negligible below the halocline, we suggest that these species feed on organic material and heterotrophic organisms that accumulate in the density gradient of the halocline. Therefore, the deep haline waters in the Baltic Sea represent a habitat providing shelter from predation and food supply for adapted species that allows them to gather sufficient resources and to maintain populations.

(Table 4) Chemical composition of a hydrothermal body from the Red Sea rift zone

The main features of geological structures of ocean rift zones based on results of studies of the P.P. Shirshov Institute of Oceanology with use of manned submersibles "Pisces" are under consideration in the book. Multiyear experience of geological exploration in rift zones with the use of these submersibles is summarized. Methodology of underwater operations is described. The main structural features of the Red Sea and Gulf of Aden rifts as well as the rift zone of the Reykjanes Ridge are considered.

The near-bottom plankton and benthic invertebrate fauna of Josephine and Great Meteor Seamounts (Table 2)

15 samples obtained with Beyer's epibenthic closing net were studied quantitatively. The numbers of epi- and endobenthic animals were found to be correlated with the volume of sediment in the samples. Among the planktonic components, calanoid copepodes were strongly predominant. In the samples obtained on the Great Meteor Seamount, very much larger numbers of these animals were caught in the daytime than at night. Possible explanations for this difference are suggested.

End-to-end modelling for an ecosystem approach to fisheries in the Northern Humboldt Current Ecosystem

This work represents an original contribution to the methodology for ecosystem models' development as well as the rst attempt of an end-to-end (E2E) model of the Northern Humboldt Current Ecosystem (NHCE). The main purpose of the developed model is to build a tool for ecosystem-based management and decision making, reason why the credibility of the model is essential, and this can be assessed through confrontation to data. Additionally, the NHCE exhibits a high climatic and oceanographic variability at several scales, the major source of interannual variability being the interruption of the upwelling seasonality by the El Niño Southern Oscillation, which has direct e ects on larval survival and sh recruitment success. Fishing activity can also be highly variable, depending on the abundance and accessibility of the main shery resources. This context brings the two main methodological questions addressed in this thesis, through the development of an end-to-end model coupling the high trophic level model OSMOSE to the hydrodynamics and biogeochemical model ROMS-PISCES: i) how to calibrate ecosystem models using time series data and ii) how to incorporate the impact of the interannual variability of the environment and shing. First, this thesis highlights some issues related to the confrontation of complex ecosystem models to data and proposes a methodology for a sequential multi-phases calibration of ecosystem models. We propose two criteria to classify the parameters of a model: the model dependency and the time variability of the parameters. Then, these criteria along with the availability of approximate initial estimates are used as decision rules to determine which parameters need to be estimated, and their precedence order in the sequential calibration process. Additionally, a new Evolutionary Algorithm designed for the calibration of stochastic models (e.g Individual Based Model) and optimized for maximum likelihood estimation has been developed and applied to the calibration of the OSMOSE model to time series data. The environmental variability is explicit in the model: the ROMS-PISCES model forces the OSMOSE model and drives potential bottom-up e ects up the foodweb through plankton and sh trophic interactions, as well as through changes in the spatial distribution of sh. The latter e ect was taken into account using presence/ absence species distribution models which are traditionally assessed through a confusion matrix and the statistical metrics associated to it. However, when considering the prediction of the habitat against time, the variability in the spatial distribution of the habitat can be summarized and validated using the emerging patterns from the shape of the spatial distributions. We modeled the potential habitat of the main species of the Humboldt Current Ecosystem using several sources of information ( sheries, scienti c surveys and satellite monitoring of vessels) jointly with environmental data from remote sensing and in situ observations, from 1992 to 2008. The potential habitat was predicted over the study period with monthly resolution, and the model was validated using quantitative and qualitative information of the system using a pattern oriented approach. The nal ROMS-PISCES-OSMOSE E2E ecosystem model for the NHCE was calibrated using our evolutionary algorithm and a likelihood approach to t monthly time series data of landings, abundance indices and catch at length distributions from 1992 to 2008. To conclude, some potential applications of the model for shery management are presented and their limitations and perspectives discussed.

Perfil parasitológico de Oreochromis niloticus y su relación con la calidad del agua en granjas acuícolas del distrito de riego Atiocoyo, San Pablo Tacachico, La Libertad, El Salvador

La investigación se realizó en el Distrito de Riego del Cantón Atiocoyo Municipio de San Pablo Tacachico, La Libertad entre los meses de julio a septiembre del año 2014. El objetivo de la investigación fue determinar el perfil parasitológico de Oreochromis niloticus y su relación con la calidad del agua en granjas acuícolas de dicho Distrito de Riego, ya que Atiocoyo representa la zona de producción acuícola más grande de El Salvador y su principal fuente de abastecimiento de agua es el Rio Sucio, el cual es uno de los ríos más contaminados del país por lo tanto utilizar sus aguas sin tratamientos de descontaminación para la producción de alimentos, representa un enorme riesgo a la salud humana. Para el estudio se muestrearon diez granjas y se analizaron un total de 90 tilapias utilizando las técnicas de Disección, Raspado de piel y Coproparasitologicas, para la detección de parásitos adultos y huevos. Se encontraron 14 géneros de parásitos de los cuales cuatro son específicos de peces y diez de otros vertebrados, los géneros Phagobranchium sp y Trichodina sp presentaron mayor prevalencia con un 24.44% y 22.22% respectivamente, siendo los de menor prevalencia Ascaris sp, Enterobious sp, Heterakis sp y Paragonimus sp con 1.11% cada género. Se determinó que los parámetros indicadores de calidad de agua en los cultivos de tilapia en Atiocoyo, no influye sobre la presencia de parásitos ya que no se encontró relación significativa entre dichas variables según el Coeficiente de Correlación de Pearson, ya que el p-valor es mayor que 0.05, por lo tanto la presencia de parásitos en los cultivos de tilapias en Atiocoyo se le atribuye a la contaminación microbiológica de la fuente de abastecimiento de agua.

Determinación de la Flora Bacteriana Nasal y Cloacal de la Tortuga “golfina” Lepidochelys olivacea, Especie Anidante en el Área Natural Protegida Complejo Los Cóbanos. Sonsonate, El Salvador

Durante su ciclo de vida las tortugas marinas están expuestas a muchos peligros, cada año mueren al ser capturadas accidentalmente en las redes de pesca, víctimas de la pérdida de hábitat de áreas de alimentación y anidación, debido al desarrollo costero e incremento del turismo, lo anterior ha ocasionado que se les considere como especies en peligro o amenazadas de extinción. La mayoría de las enfermedades de las tortugas marinas aún no han sido descritas; por lo que es necesario conocer las bacterias que se encuentran presente en el organismo y los posibles vectores de enfermedades. El objetivo del presente estudio fue determinar la composición de la flora bacteriana en el área nasal y cloacal de las tortugas marinas Lepidochelys olivacea durante su época de anidación entre los meses de junio a octubre del año 2012, se colectaron muestras bacteriológicas provenientes de 20 hembras anidantes mediante recorridos nocturnos en tres playas El Faro, El Cocal y Salinitas pertenecientes al Área Natural Protegida Complejos Los Cóbanos Departamento de Sonsonate, El Salvador. Las muestras se colectaron a través del uso de hisopos estériles que se introdujeron en la cloaca durante el desove y en uno de los conductos nasales. Estas fueron trasladadas en al laboratorio de Biología de la Universidad de El Salvador en menos de 24 horas para su posterior análisis. En el laboratorio las muestras nasales fueron cultivadas en agar sangre, MacConkey y agar manitol sal, las cloacales fueron cultivadas en agar sangre, MacConkey, TCBS y XLD, a todas las colonias aisladas se les realizaron pruebas bioquímicas rutinarias IMVIC. Además se utilizó API 20E.

Presencia de neonatos de la familia Sphyrnidae en redes de enmalle, desembarcados en el Puerto El Triunfo, Departamento de Usulután, y San Luís La Herradura, Departamento de La Paz, El Salvador

La investigación consistió en caracterizar la pesca artesanal de neonatos de tiburón martillo Sphyrna lewini capturados en la franja costera de la zona de pesca de San Luis la Herradura y Puerto El Triunfo, El Salvador, realizado de abril a junio de 2010, por medio del registro de desembarques. Las variables consideradas fueron Longitud Total (LT), sexo, abundancia (número de individuos), y además se consideró las características de las redes (longitud, altura y apertura de la luz de malla, así como también la potencia de los motores utilizados en las embarcaciones). Se registraron 2,934 ejemplares cuyo ámbito de tallas fue de 39 a 70 cm de LT, se observó variaciones según el mes de muestreo, en abril la talla fue de 39 a 66 cm; en mayo varío entre 41 y 62 cm y en junio fue de 39 a 70 cm. Las redes más usadas son la combinación de luz de malla 6.4 y 7.5 cm (6.4/7.5) con 69%; seguida de la red de 7.5 cm con 14%. Se utilizó el método de ANOVA para establecer diferencias significativas entre los dos tipos de luces de mallas más utilizadas (6.4/7.5 cm y 7.5 cm) con respecto a la longitud total (LT), obteniendo F=19.26, P= 0.000 y F=0.13, P= 0.881, respectivamente. La proporción sexual entre machos y hembras fue similar en los tres meses de muestreo, con una relación de 1.1:1 respectivamente, siendo el X2 de 4.88 (gl=1; X2 tabulado= 3.841), lo que significa que existen diferencias estadísticamente significativas en la totalidad de las muestras. La abundancia relativa expresada como Captura por Unidad de Esfuerzo (CPUE: individuos/tiempo de captura) alcanzó un promedio de 5 ind./hr ± 4.13. De acuerdo con la frecuencia de captura, fue posible establecer tres áreas de pesca que representan los sitios seleccionados por los pescadores: a) Monte Alto ubicada frente a la desembocadura del rio Lempa, b) Corrales ubicada frente a la Bahía de Jiquilisco; y c) Casa Blanca situada la desembocadura del Estero de Jaltepeque.