Inferring a weighted elastic network from partial unfolding with coarse-grained simulations

A number of studies have demonstrated that simple elastic network models can reproduce experimental B-factors, providing insights into the structure-function properties of proteins. Here, we report a study on how to improve an elastic network model and explore its performance by predicting the experimental B-factors. Elastic network models are built on the experimental C coordinates, and they only take the pairs of C atoms within a given cutoff distance r(c) into account. These models describe the interactions by elastic springs with the same force constant. We have developed a method based on numerical simulations with a simple coarse-grained force field, to attribute weights to these spring constants. This method considers the time that two C atoms remain connected in the network during partial unfolding, establishing a means of measuring the strength of each link. We examined two different coarse-grained force fields and explored the computation of these weights by unfolding the native structures. Proteins 2014; 82:119-129. (c) 2013 Wiley Periodicals, Inc.

Microstrain Around Dental Implants Supporting Fixed Partial Prostheses Under Axial and Non-Axial Loading Conditions, In Vitro Strain Gauge Analysis

The current study used strain gauge analysis to perform an in vitro evaluation of the effect of axial and non-axial loading on implant-supported fixed partial prostheses, varying the implant placement configurations and the loading points. Three internal hexagon implants were embedded in the center of each polyurethane block with in-line and offset placements. Microunit abutments were connected to the implants using a torque of 20 N.cm, and plastic prosthetic cylinders were screwed onto the abutments, which received standard patterns cast in Co-Cr alloy (n = 10). Four strain gauges (SGs) were bonded onto the surfaces of the blocks, tangentially to the implants: SG 01 mesially to implant 1, SG 02 and SG 03 mesially and distally to implant 2, respectively, and SG 04 distally to implant 3. Each metallic structure was screwed onto the abutments using a 10-N.cm torque, and axial and non-axial loads of 30 kg were applied at 5 predetermined points. The data obtained from the strain gauge analyses were analyzed statistically through the repeated measures analysis of variance and the Tukey test, with a conventional level of significance of P < 0.05. The results showed a statistically significant difference for the loading point (P = 0.0001), with point E (nonaxial) generating the highest microstrain (327.67 mu epsilon) and point A (axial) generating the smallest microstrain (208.93 mu epsilon). No statistically significant difference was found for implant placement configuration (P = 0.856). It was concluded that the offset implant placement did not reduce the magnitude of microstrain around the implants under axial and non-axial loading conditions, although loading location did influence this magnitude.

Chemical composition, in vitro digestibility and gas production of Brachiaria managed under different forage allowances

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Effects of food processing and fibre content on the digestibility, energy intake and biochemical parameters of Blue-and-gold macaws (Ara ararauna L. - Aves, Psittacidae)

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Cana-de-açúcar hidrolisada para vacas em lactação

Pós-graduação em Zootecnia - FCAV

Partial lateral corpectomy associated with pediculectomy to treat extradural chondroma in a dog: technique description

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Digestibility and nitrogen balance of lambs fed sugarcane hydrolyzed under different conditions as roughage in the diet

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Substituição parcial do farelo de soja pela farinha de carne e ossos em dietas para juvenis de tilápia-do-nilo

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Glicerina bruta associada a aditivos na alimentação de bovinos de corte

Pós-graduação em Zootecnia - FCAV

Feed digestibility and productive performance of bullfrogs raised in cages and fed in different periods and high frequency

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Removable Partial Dentures: Use of Rapid Prototyping

The CAD/CAM technology associated with rapid prototyping (RP) is already widely used in the fabrication of all-ceramic fixed prostheses and in the biomedical area; however, the use of this technology for the manufacture of metal frames for removable dentures is new. This work reports the results of a literature review conducted on the use of CAD/CAM and RP in the manufacture of removable partial dentures.

Clinical evaluation of failures in removable partial dentures

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Digestibilidade e desempenho em cordeiros alimentados com dietas contendo feno de amoreira

The experiment was conducted to evaluate the intake, the digestibility and the performance of lambs fed with diets containing 0; 12,5 and 25% of mulberry hay in substitution of the concentrate. It was used a total of 24 lambs Ile de France breed, non castrated, average age 60 days and and 15 kg of body weight, confined, distributed in a completely randomized design. Voluntary intake of nutrients was not altered (P>0.05) by different percentages of mulberry hay inclusion in the concentrate, except ether extract which decreased linear (P<0.01). The digestibility of nutrients, days on feeding, daily weight gain and the feed conversion, were also not affected (P>0.05). The partial substitution of the concentrate, based on soybean meal and corn grain, by mulberry hay up to 25% does not compromise the intake, the digestibility of nutrients and the performance of diet of feedlot lambs.

Desempenho e digestibilidade de componentes nutritivos de dietas contendo subprodutos de leaginosas na alimentação de cordeiros

The aim of this work was evaluate introduction of byproducts of oleaginous in lambs feeding. Diets were composed for 30% of Tifton hay and 70% of concentrate based on corn grain, soybean meal, soybean cake, sunflower cake and peanut cake, limestone and mineral mixture, as dites: FS - control with soybean meal, TS - soybean cake as part of the concentrate, TG sunflower cake as part of the concentrate and TA - peanut cake as part of the concentrate. For performance evaluating 24 Santa Ines lambs with initial age and weight of 70 days and 19 +/- 2 kg, according to a completely randomized design. For digestive evaluate, weight Santa Ines sheep with initial age and weight of 70 days and 16 +/- 1.2 kg, adapted to the use of bag, for collect feces. Animals were distributed in a replicated 4 x 4 Latin Square and means were compared by Tukey's test with 5% significance level. By the performance trial, duration of confinement, weight gain, fed conversion and the dry matter intake were not affected (P>0,05), with averages of 54.29 days, 259 g/day, 4.29 kg of DM/kg and 1.32 kg/day, respectively. There were no difference P>0,05) for intake DM, OM, CP, CT and CE among diets, digestibility trial with averages of 76.23; 74.47; 76.44; 41.12; 73.00 and 93.00%, respectively. There were no differences for digestibility DM, OM, CP, ADF, CT and NCF. The partial substitution of the soybean meal for byproducts of oleaginous was a good proteic alternative in the feeding of lambs.

Partial purification, immobilization and preliminary biochemical characterization of lipases from Rhizomucor pusillus

Lipases have important applications in biotechnological processes, motivating us to produce, purify, immobilize and perform a biochemical characterization of the lipase from Rhizomucor pusillus. The fungus was cultivated by solid state fermentation producing lipolytic activity of about 0.5 U/mL(4U/g). A partial purification by gel filtration chromatography in Se-phacryl S-100 allowed obtaining a yield of about 85% and a purification factor of 5.7. Our results revealed that the purified enzyme is very stable with some significant differences in its properties when compared to crude extract. The crude enzyme extract has an optimum pH and temperature of 7.5 ° C and 40 ° C, respectively. After purification, a shift of the optimum pH from 7 to 8 was observed, as well as a rise in optimumtemperature to 60 ° C and an increase in stability. The enzyme was immobilized on CNBr-Agarose and Octyl-Agarose supports, having the highest immobilization yield of 94% in the second resin. The major advantage of immobilization in hydrophobic media such as Octyl is in its hyper activation, which in this case was over 200%, a very interesting finding. Another advantage of this type of immobilization is the possibility of using the derivatives in biotechnological applications, such as in oil enriched with omega-3 as the results obtained in this study display the hydrolysis of 40% EPA and 7% DHA from sardine oil, promising results compared to the literature.