Micro-Raman study of stress distribution in local isolation structures and correlation with transmission electron microscopy

Stress in local isolation structures is studied by micro‐Raman spectroscopy. The results are correlated with predictions of an analytical model for the stress distribution and with cross‐sectional transmission electron microscopy observations. The measurements are performed on structures on which the Si3N4 oxidation mask is still present. The influence of the pitch of the periodic local isolation pattern, consisting of parallel lines, the thickness of the mask, and the length of the bird"s beak on the stress distribution are studied. It is found that compressive stress is present in the Si substrate under the center of the oxidation mask lines, with a magnitude dependent on the width of the lines. Large tensile stress is concentrated under the bird"s beak and is found to increase with decreasing length of the bird"s beak and with increasing thickness of the Si3N4 film.

Efficacious treatment of non-dermatophyte mould onychomycosis with topical amphotericin B.

BACKGROUND: Dermatophytes are the main cause of onychomycosis, but various non-dermatophyte moulds (NDMs) are often the infectious agents in abnormal nails. In particular, Fusarium spp. and other NDMs are mostly insensitive to standard onychomycosis treatment with topical agents as well as with oral terbinafine and itraconazole.¦OBJECTIVE: The aim of this work is to report the efficacy of a topical amphotericin B solution on NDM onychomycosis in a series of 8 patients resistant to multiple conventional topical and systemic treatments.¦METHODS: Treatment consisted in the application of an optimized amphotericin B solution once daily to the affected nails and surrounding tissue. No mechanical debridement or medications were allowed except for trimming excessively long nails or in some cases occasionally applying urea-based cream to soften thickened nail plates.¦RESULTS: Onychomycosis was clinically cured in all patients after a 12-month treatment. Mycological cure was obtained in all but 1 patient.¦CONCLUSIONS: Topical amphotericin B is an efficacious, safe, cheap and easy-to-apply treatment which should be considered as first-line therapy for NDM onychomycosis.

Una nova subespàcie de Pedicularis pyrenaica J. Gay (Scrophulariaceae) als Pirineus Centrals

A new subspecies of Pedicularis pyrenaica J. Gay (Scrophulariaceae) in Central Pyrenees. We describe a new subspecies of Pedicularis pyrenaica (P. pyrenaica subsp. praetermissa) from the Central Pyrenees, which differs from the typical in the shape of the upper lip of the corolla (fusiform, attenuated in a conical beak), as for the larger size of the corolla and the whole plant. We add several comments on the morphological characterization and the habitat of the plant in relation to close taxa

Final antigenic Melan-A peptides produced directly by the proteasomes are preferentially selected for presentation by HLA-A*0201 in melanoma cells.

The melanoma-associated protein Melan-A contains the immunodominant CTL epitope Melan-A(26/27-35)/HLA-A*0201 against which a high frequency of T lymphocytes has been detected in many melanoma patients. In this study we show that the in vitro degradation of a polypeptide encompassing Melan-A(26/27-35) by proteasomes produces both the final antigenic peptide and N-terminally extended intermediates. When human melanoma cells expressing the corresponding fragments were exposed to specific CTL, those expressing the minimal antigenic sequence were recognized more efficiently than those expressing the N-terminally extended intermediates. Using a tumor-reactive CTL clone, we confirmed that the recognition of melanoma cells expressing an N-terminally extended intermediate of Melan-A is inefficient. We demonstrated that the inefficient cytosolic trimming of N-terminally extended intermediates could offer a selective advantage for the preferred presentation of Melan-A peptides directly produced by the proteasomes. These results imply that both the proteasomes and postproteasomal peptidases limit the availability of antigenic peptides and that the efficiency of presentation may be affected by conditions that alter the ratio between fully and partially processed proteasomal products.

Evaluation of DuroTrim Vegetation Control Mats, HR-2090, 2002

The routine maintenance along Iowa's highways and roadways during the summer growing season is a time consuming and costly endeavor. Trimming around guardrail posts and delineator posts is especially costly due to the handwork required. Trimming costs account for approximately 50% of the shoulder mowing costs according to expense figures obtained from the Iowa Department of Transportation (DOT), Office of Maintenance. The FY 2001 statewide trimming costs for the Iowa DOT was approximately $430,000 ($305,000 labor, $125,000 equipment and materials). This product would be required to perform well for 9-21 years, on average, in order to recoup the cost of installation. This includes the durability of the product, but not the cost of repair due to traffic damage, snowplow and wing damage, or damage caused by mowing operations. Maintenance costs associated with vegetation creep over the mats and repair costs would extend the required service life. As a result of resource realignment, the Iowa DOT roadside maintenance policy, for FY 2003 and the future, will be to eliminate trimming around delineator posts unless the reflector is obstructed. This policy change will effectively eliminate the need for weed control mats due to the significant reduction in trimming. The use of the weed control mats could be justified in areas that are dangerous to maintenance workers such as guardrail installations in high traffic areas. Because the delineator posts are further from the edge of the traveled roadway, there is a reduced risk to the maintenance workforce while hand trimming. Because the DuroTrim Vegetation Control Mats appear to have performed adequately in the field trial, they could be considered for use, where safety conditions warrant. That use should be limited, however, due to the considerable initial cost and changes in Iowa DOT roadside maintenance policy. Application should be limited to instances where the use of the DuroTrim Vegetation Control Mats would have a significant impact on the safety of the roadside maintenance workers. The cost savings, due to the elimination of the trimming and mowing alone, is not enough to justify their use in most situations at their current cost. The test sections will continue to be monitored periodically so that approximate service life can be determined.

CO2-laserin soveltaminen WFU-paperin reunan leikkaamiseen

Tämän diplomityön tarkoitus oli selvittää CO2-laserin soveltuvuutta paperin reunan leikkaamiseen ennen liimapuristinta nopealle modernilleWFU-paperikoneelle. Merkittävimmät leikkauskokeet tehtiin leikkaamalla paperirataa todenmukaisissa olosuhteissa koekoneella. Koeleikkauksissa tutkittiin myös päällystettyjen paperilajien CO2-laserleikkausta. Paperin reunan koeleikkauksia suoritettiin leikkauspöytää vasten sekä telaa vasten. Leikkauspöytänä käytettiin korkeapainevesileikkaimelle suunniteltua leikkauspöytää, jota paranneltiin tämän työn yhteydessä paremmin laserleikkaukselle sopivaksi. Telaa vasten suoritetuilla leikkauksilla lasertehon tarve oli suurempi verrattuna pöytää vasten leikkaukseen samalla leikkausnopeudella ja samalla paperilajilla. Laserlaitteiston mitoittaminen oikein pelkkien arkkileikkauskokeiden perusteella ei ollut mahdollista. Myös rullilla tapahtuvia leikkauskokeita tarvittiin. Pöytää vasten tapahtuvaan leikkaamiseen tarvitaan 1000 W laserlaite paperin molemmille reunoille. Tämän tehoiset laserlaitteet riittävät kaikille Changshun PK 1:n paperilajeille niiden lajikohtaiseen maksimiajonopeuteen. Testatuista kolmesta polttovälistä antoi 5" polttoväli parhaat leikkaustulokset. Polttopisteen paikka voi vaihdella ± 0.75 mm paperin pinnasta vaikuttamatta silti merkittävästi lasertehon tarpeeseen. Laserleikatun paperin reuna oli hyvälaatuinen, eikä laserleikkaus aiheuttanut paperille epätoivottuja asioita kuten mustumista.

Variation of grain nitrogen content in relation with grain yield in old and modern Spanish wheats grown under a wide range of agronomic conditions in a Mediterranean region

Wheat yield and grain nitrogen concentration (GNC; mg N/g grain) are frequently negatively correlated. In most growing conditions, this is mainly due to a feedback process between GNC and the number of grains/m2. In Mediterranean conditions, breeders may have produced cultivars with conservative grain set. The present study aimed at clarifying the main physiological determinants of grain nitrogen accumulation (GNA) in Mediterranean wheat and to analyse how breeding has affected them. Five field experiments were carried out in north-eastern Spain in the 2005/06 and 2006/ 07 growing seasons with three cultivars released at different times and an advanced line. Depending on the experiment, source-sink ratios during grain filling were altered by reducing grain number/m2 either through pre-anthesis shading (unshaded control or 0.75 shading only between jointing and anthesis) or by directly trimming the spikes after anthesis and before the onset of the effective grain filling period (un-trimmed control or spikes halved 7–10 days after anthesis). Grain nitrogen content (GN content ; mg N/grain) decreased with the year of release of the genotypes. As the number of grains/m2 was also increased by breeding there was a clear dilution effect on the amount of nitrogen allocated to each grain. However, the increase in GN content in old genotypes did not compensate for the loss in grain nitrogen yield (GNY) due to the lower number of grains/m2. GN content of all genotypes increased (increases ranged from 0.13 to 0.40 mg N/grain, depending on experiment and genotype) in response to the post-anthesis spike trimming or pre-anthesis shading. The degree of source-limitation for GNA increased with the year of release of the genotypes (and thus with increases in grain number/m2) from 0.22 (mean of the four manipulative experiments) in the oldest cultivar to 0.51 (mean of the four manipulative experiments) in the most modern line. It was found that final GN content depended strongly on the source-sink ratio established at anthesis between the number of grains set and the amount of nitrogen absorbed at this stage. Thus, Mediterranean wheat breeding that improved yield through increases in grain number/m2 reduced the GN content by diluting a rather limited source of nitrogen into more grains. This dilution effect produced by breeding was further confirmed by the reversal effect produced by grain number/m2 reductions due to either pre-anthesis shading or post-anthesis spike trimming.

Kartonkikoneen tuotannonsuunnittelu jalostuslähtöisesti

Työn tarkoituksena oli selvittää monipope-menetelmän taustaa, menetelmän karkea tekninen toteutus, sovellettavuus kartonkikone KA1:n tuotantoon ja menetelmän mukanaan tuomat edut ja haitat, sekä ratkaisumallit mahdollisten tuotannollisten häiriötilanteiden ratkaisemista varten. Työssä selvitettiin myös tuotannon, tuotannon-suunnittelun, varastoinnin, asiakaspalvelun ja tuottavuuden tehostamista monipope-menetelmän avulla, sekä tuotannonsuunnittelun jalostuslähtöisyyden korostamista. Työn kirjallisuusosassa käsitellään lyhyesti toiminnanohjauksen, tuotannonsuunnittelun ja materiaalinhallinnan perusteiden lisäksi tuotannon-suunnittelussa hyödynnettävän tietojärjestelmän toimintaa ja kartonkitehtaan tuotantoprosessi kartonkikoneiden ja muovipäällystyskoneiden osalta. Kokeellisessa osassa perehdyttiin tuotannon ja tuotannonsuunnittelun tämän hetkiseen tilaan, selvitettiin monipope-menetelmän idea ja sen karkea tekninen toteutus ja tutkittiin monipopemenetelmän sovellettavuutta pohjautuen toteutuneeseen tuotantoon ja nykyisiin tuotannon rajoitteisiin. Välivarastointikapasiteetin rajoittaminen johti päällystyskapasiteetin uudelleen organisoimisen ja nykyisen kapasiteetin riittävyyden selvittämiseen koetrimmitysten avulla. Lisäksi selvitettiin uuden menetelmän avulla saavutettavaa tuotannon nousua erityisesti jatkojalostuksen osalta. Monipope-menetelmän sovellettavuustutkimuksissa havaittiin uuden menetelmän tuovan mukanaan lukuisia etuja ja säästöjä muun muassa materiaalikulujen alentumisen ja vähentyneiden työvaiheiden kautta. Kartonkikone KA1:n tuotteiden jatkojalostuksen tuotannon nousuksi määritettiin noin 2 %:ia ja tämän lisäksi uusi menetelmä yksinkertaistaisi ja helpottaisi koko kartonkitehtaan rullaliikennettä ja varastojen hallintaa. Menetelmä toisi uusia toimintamalleja KA1:n tuotannon häiriötilanteiden varalle, lisäisi tuotannonsuunnittelun joustavuutta ja helpottaisi myös asiakaspalvelun ja laaduntarkkailun kehittämistä. Tutkimuksen tuloksena voidaan todeta, että monipope-menetelmän tuomat edut ovat kiistattomat. Menetelmän soveltamisen mahdollisuuksia tulisikin miettiä jatkossa investointeja suunnitellessa, jotta menetelmän toteuttaminen kohtuullisin investointikustannuksin nykyisten tuotantoedellytysten lisäksi olisi mahdollista.

Sahalaitosten häiriömittauskäytännön yhtenäistäminen

Työn tavoitteena oli selvittää kahdeksan sahalaitoksen häiriöseurannan nykytila sekä selvittämisen jälkeen ehdottaa sahalaitoksille otettavaksi käyttöön yhtenäinen samoihin häiriön luokitus- ja kirjaamisperiaatteisiin perustuva mittauskäytäntö. Yhtenäisen käytännön myötä sahalaitoksilta saatavat häiriötiedot ovat sahalaitosten kesken vertailukelpoisia. Mittauskäytännön yhtenäistämisellä pyritään nostamaan tuotantolinjojen käytettävyyttä. Sahalaitosten häiriömittauskäytännöissä oletettiin olevan merkittäviä eroja. Työ suoritettiin lähettämällä kysymykset sähköpostilla etukäteen sahalaitoksille, jonka jälkeen käytiin sahalaitoksissa haastattelemassa häiriöasioiden kanssa tekemisissä olevia henkilöitä. Haastattelujen jälkeen sahalaitoksilta saatuja tietoja täydennettiin sähköpostin välityksellä. Näiden toimintatapojen lisäksi tutkittiin sahalaitoksilta saatuja häiriöraportteja ja syykoodilistoja sekä verrattiin tutkimuksessa satuja tuloksia aihetta käsittelevään kirjallisuuteen. Tutkimustulokset vahvistavat työn aloitusvaiheessa tehdyn oletuksen, jonka mukaan sahalaitosten häiriömittauskäytännöissä on merkittäviä eroja. Tutkimusta hyödyntäen asiantuntijatyöryhmä yhtenäisti sahalinjojen ja tasaamoiden pien-häiriöiden ja varsinaisten häiriöiden laukaisurajat sekä häiriöiden mittauspaikat. Myös syykoodilistat yhtenäistettiin. Tämän lisäksi muodostettiin yhtenäinen vertailuraportti, jotta sahalaitosten häiriötietojen vertaileminen on mahdollista.

A highly expressed miR-101 isomiR is a functional silencing small RNA

Background MicroRNAs (miRNAs) are short non-coding regulatory RNAs that control gene expression usually producing translational repression and gene silencing. High-throughput sequencing technologies have revealed heterogeneity at length and sequence level for the majority of mature miRNAs (IsomiRs). Most isomiRs can be explained by variability in either Dicer1 or Drosha cleavage during miRNA biogenesis at 5" or 3" of the miRNA (trimming variants). Although isomiRs have been described in different tissues and organisms, their functional validation as modulators of gene expression remains elusive. Here we have characterized the expression and function of a highly abundant miR-101 5"-trimming variant (5"-isomiR-101). Results The analysis of small RNA sequencing data in several human tissues and cell lines indicates that 5"-isomiR-101 is ubiquitously detected and a highly abundant, especially in the brain. 5"- isomiR-101 was found in Ago-2 immunocomplexes and complementary approaches showed that 5"-isomiR-101 interacted with different members of the silencing (RISC) complex. In addition, 5"-isomiR-101 decreased the expression of five validated miR-101 targets, suggesting that it is a functional variant. Both the binding to RISC members and the degree of silencing were less efficient for 5"-isomiR-101 compared with miR-101. For some targets, both miR-101 and 5"-isomiR-101 significantly decreased protein expression with no changes in the respective mRNA levels. Although a high number of overlapping predicted targets suggest similar targeted biological pathways, a correlation analysis of the expression profiles of miR-101 variants and predicted mRNA targets in human brains at different ages, suggest specific functions for miR-101- and 5"-isomiR-101. Conclusions These results suggest that isomiRs are functional variants and further indicate that for a given miRNA, the different isomiRs may contribute to the overall effect as quantitative and qualitative fine-tuners of gene expression.

Divergence with gene flow and fine-scale phylogeographical structure in the wedge-billed woodcreeper, Glyphorynchus spirurus, a Neotropical rainforest bird.

Determining the relative roles of vicariance and selection in restricting gene flow between populations is of central importance to the evolutionary process of population divergence and speciation. Here we use molecular and morphological data to contrast the effect of isolation (by mountains and geographical distance) with that of ecological factors (altitudinal gradients) in promoting differentiation in the wedge-billed woodcreeper, Glyphorynchus spirurus, a tropical forest bird, in Ecuador. Tarsus length and beak size increased relative to body size with altitude on both sides of the Andes, and were correlated with the amount of moss on tree trunks, suggesting the role of selection in driving adaptive divergence. In contrast, molecular data revealed a considerable degree of admixture along these altitudinal gradients, suggesting that adaptive divergence in morphological traits has occurred in the presence of gene flow. As suggested by mitochondrial DNA sequence data, the Andes act as a barrier to gene flow between ancient subspecific lineages. Genome-wide amplified fragment length polymorphism markers reflected more recent patterns of gene flow and revealed fine-scale patterns of population differentiation that were not detectable with mitochondrial DNA, including the differentiation of isolated coastal populations west of the Andes. Our results support the predominant role of geographical isolation in driving genetic differentiation in G. spirurus, yet suggest the role of selection in driving parallel morphological divergence along ecological gradients.

The temporal dynamics of resource use by frugivorous birds: a network approach

Ecological network patterns are influenced by diverse processes that operate at different temporal rates. Here we analyzed whether the coupled effect of local abundance variation, seasonally phenotypic plastic responses, and species evolutionary adaptations might act in concert to shape network patterns. We studied the temporal variation in three interaction properties of bird species (number of interactions per species, interaction strength, and interaction asymmetry) in a temporal sequence of 28 plant frugivore interaction networks spanning two years in a Mediterranean shrubland community. Three main hypotheses dealing with the temporal variation of network properties were tested, examining the effects of abundance, switching behavior between alternative food resources, and morphological traits in determining consumer interaction patterns. Our results demonstrate that temporal variation in consumer interaction patterns is explained by short-term variation in resource and bird abundances and seasonal dietary switches between alternative resources (fleshy fruits and insects). Moreover, differences in beak morphology are associated with differences in switching behavior between resources, suggesting an important role of foraging adaptations in determining network patterns. We argue that beak shape adaptations might determine generalist and specialist feeding behaviors and thus the positions of consumer species within the network. Finally, we provide a preliminary framework to interpret phylogenetic signal in plant animal networks. Indeed, we show that the strength of the phylogenetic signal in networks depends on the relative importance of abundance, behavioral, and morphological variables. We show that these variables strongly differ in their phylogenetic signal. Consequently, we suggest that moderate and significant phylogenetic effects should be commonly observed in networks of species interactions. Read More: http://www.esajournals.org/doi/abs/10.1890/07-1939.1

Alumiinipainevalujen purseen- ja jäysteenpoiston kehitysmahdollisuudet

Valupurseiden ja jäysteiden poistaminen on osa alumiinipainevalujen tuotantoprosessia. Työssä on tutkittu käytössä olevien ja uusien menetelmien mahdollisuuksia taloudellisempaan tuotantoon. Purseiden ja jäysteiden poistamiseen käytettävien menetelmien lisäksi tutkimuskohteita ja ideoita on haettu muista metallien työstömenetelmistä. Valupurseiden ja jäysteiden määritelmiä, muodostumista ja luokittelua on esitelty laajasti. Menetelmien tutkimus on painottunut valupurseiden poistamiseen ja valun jälkeistä leikkaamista on tutkittu erityisesti sisäpuolisten muotojen työstämiseen käytettyjen pistintyökalujen kautta. Muotin ulostyöntötapin purseen poistaminen on ollut tärkeä asia menetelmien tutkimuksissa. Valupurseiden, leikkaus- ja koneistusjäysteiden poistamiseksi lastuavista työstömenetelmistä tutkittuja ovat koneistaminen koneistuskeskuksella, aventaminen, hiertopuhallus, suihkuhiertäminen, vesisuihkuleikkaus, ultraäänityöstö, harjaus, painehiertäminen, hiominen kohdistetuilla ja kohdistamattomilla menetelmillä. Myös terminen jäysteenpoistomenetelmä (TEM), kemiallinen työstö (ECM) ja laserleikkaus on otettu esiin tutkimuksessa. Työn tuloksena on näkemys tutkittujen menetelmien jatkokehitystarpeesta ja mahdollisuudesta soveltaa niitä sarjatuotantoon.

Characterisation of Human Neutral and Lysosomal alpha-Mannosidases

Neutral alpha-mannosidase and lysosomal MAN2B1 alpha-mannosidase belong to glycoside hydrolase family 38, which contains essential enzymes required for the modification and catabolism of asparagine-linked glycans on proteins. MAN2B1 catalyses lysosomal glycan degradation, while neutral α-mannosidase is most likely involved in the catabolism of cytosolic free oligosaccharides. These mannose containing saccharides are generated during glycosylation or released from misfolded glycoproteins, which are detected by quality control in the endoplasmic reticulum. To characterise the biological function of human neutral α-mannosidase, I cloned the alpha-mannosidase cDNA and recombinantly expressed the enzyme. The purified enzyme trimmed the putative natural substrate Man9GlcNAc to Man5GlcNAc, whereas the reducing end GlcNAc2 limited trimming to Man8GlcNAc2. Neutral α-mannosidase showed highest enzyme activity at neutral pH and was activated by the cations Fe₂+, Co2+ and Mn₂+, Cu2+ in turn had a strong inhibitory effect on alpha-mannosidase activity. Analysis of its intracellular localisation revealed that neutral alpha-mannosidase is cytosolic and colocalises with proteasomes. Further work showed that the overexpression of neutral alpha-mannosidase affected the cytosolic free oligosaccharide content and led to enhanced endoplasmic reticulum associated degradation and underglycosylation of secreted proteins. The second part of the study focused on MAN2B1 and the inherited lysosomal storage disorder α-mannosidosis. In this disorder, deficient MAN2B1 activity is associated with mutations in the MAN2B1 gene. The thesis reports the molecular consequences of 35 alpha-mannosidosis associated mutations, including 29 novel missense mutations. According to experimental analyses, the mutations fall into four groups: Mutations, which prevent transport to lysosomes are accompanied with a lack of proteolytic processing of the enzyme (groups 1 and 3). Although the rest of the mutations (groups 2 and 4) allow transport to lysosomes, the mutated proteins are less efficiently processed to their mature form than is wild type MAN2B1. Analysis of the effect of the mutations on the model structure of human lysosomal alpha-mannosidase provides insights on their structural consequences. Mutations, which affect amino acids important for folding (prolines, glycines, cysteines) or domain interface interactions (arginines), arrest the enzyme in the endoplasmic reticulum. Surface mutations and changes, which do not drastically alter residue volume, are tolerated better. Descriptions of the mutations and clinical data are compiled in an α-mannosidosis database, which will be available for the scientific community. This thesis provides a detailed insight into two ubiquitous human alpha-mannosidases. It demonstrates that neutral alpha-mannosidase is involved in the degradation of cytosolic oligosaccharides and suggests that the regulation of this α-mannosidase is important for maintaining the cellular homeostasis of N-glycosylation and glycan degradation. The study on alpha-mannosidosis associated mutations identifies multiple mechanisms for how these mutations are detrimental for MAN2B1 activity. The α-mannosidosis database will benefit both clinicians and scientific research on lysosomal alpha‑mannosidosis.

Aging based maintenance and reinvestment scheduling of electric distribution

The maintenance of electric distribution network is a topical question for distribution system operators because of increasing significance of failure costs. In this dissertation the maintenance practices of the distribution system operators are analyzed and a theory for scheduling maintenance activities and reinvestment of distribution components is created. The scheduling is based on the deterioration of components and the increasing failure rates due to aging. The dynamic programming algorithm is used as a solving method to maintenance problem which is caused by the increasing failure rates of the network. The other impacts of network maintenance like environmental and regulation reasons are not included to the scope of this thesis. Further the tree trimming of the corridors and the major disturbance of the network are not included to the problem optimized in this thesis. For optimizing, four dynamic programming models are presented and the models are tested. Programming is made in VBA-language to the computer. For testing two different kinds of test networks are used. Because electric distribution system operators want to operate with bigger component groups, optimal timing for component groups is also analyzed. A maintenance software package is created to apply the presented theories in practice. An overview of the program is presented.