Characterization of the East Houston particulate matter <2.5 atmosphere; a novel method for desorbing organic constituents from airborne particulates

I have developed a novel approach to test for toxic organic substances adsorbed onto ultra fine particulate particles present in the ambient air in Northeast Houston, Texas. These particles are predominantly carbon soot with an aerodynamic diameter (AD) of <2.5 μm. If present in the ambient air, many of the organic substances will be absorbed to the surface of the particles (which act just like a charcoal air filter), and may be adducted into the respiratory system. Once imbedded into the lungs these particles may release the adsorbed toxic organic substances with serious health consequences. I used a Airmetrics portable Minivol air sampler time drawing the ambient air through collection filters samples from 6 separate sites in Northeast Houston, an area known for high ambient PM 2.5 released from chemical plants and other sources (e.g. vehicle emissions).(1) In practice, the mass of the collected particles were much less than the mass of the filters. My technique was designed to release the adsorbed organic substances on the fine carbon particles by heating the filter samples that included the PM 2.5 particles prior to identification by gas chromatography/mass spectrometry (GCMS). The results showed negligible amounts of target chemicals from the collection filters. However, the filters alone released organic substances and GCMS could not distinguish between the organic substances released from the soot particles from those released from the heated filter fabric. However, an efficacy tests of my method using two wax burning candles that released soot revealed high levels of benzene. This suggests that my method has the potential to reveal the organic substances adsorbed onto the PM 2.5 for analysis. In order to achieve this goal, I must refine the particle collection process which would be independent of the filters; the filters upon heating also release organic substances obscuring the contribution from the soot particles. To obtain pure soot particles I will have to filter more air so that the soot particles can be shaken off the filters and then analyzed by my new technique. ^

Development of combined micro -preparation, separation, and mass spectrometry methods and application in the microdialysis study of neuropeptide metabolism

Two sets of mass spectrometry-based methods were developed specifically for the in vivo study of extracellular neuropeptide biochemistry. First, an integrated micro-concentration/desalting/matrix-addition device was constructed for matrix-assisted laser desorption ionization mass spectrometry (MALDI MS) to achieve attomole sensitivity for microdialysis samples. Second, capillary electrophoresis (CE) was incorporated into the above micro-liquid chromatography (LC) and MALDI MS system to provide two-dimensional separation and identification (i.e. electrophoretic mobility and molecular mass) for the analysis of complex mixtures. The latter technique includes two parts of instrumentation: (1) the coupling of a preconcentration LC column to the inlet of a CE capillary, and (2) the utilization of a matrix-precoated membrane target for continuous CE effluent deposition and for automatic MALDI MS analysis (imaging) of the CE track.^ Initial in vivo data reveals a carboxypeptidase A (CPA) activity in rat brain involved in extracellular neurotensin metabolism. Benzylsuccinic acid, a CPA inhibitor, inhibited neurotensin metabolite NT1-12 formation by 70%, while inhibitors of other major extracellular peptide metabolizing enzymes increased NT1-12 formation. CPA activity has not been observed in previous in vitro experiments. Next, the validity of the methodology was demonstrated in the detection and structural elucidation of an endogenous neuropeptide, (L)VV-hemorphin-7, in rat brain upon ATP stimulation. Finally, the combined micro-LC/CE/MALDI MS was used in the in vivo metabolic study of peptide E, a mu-selective opioid peptide with 25 amino acid residues. Profiles of 88 metabolites were obtained, their identity being determined by their mass-to-charge ratio and electrophoretic mobility. The results indicate that there are several primary cleavage sites in vivo for peptide E in the release of its enkephalin-containing fragments. ^

Detección de patrones y anomalías espectrales del terreno mediante espectrometría de imagen de alta resolución : reconocimiento, optimización y evaluación multiescenario

El objeto de esta Tesis doctoral es el desarrollo de una metodologia para la deteccion automatica de anomalias a partir de datos hiperespectrales o espectrometria de imagen, y su cartografiado bajo diferentes condiciones tipologicas de superficie y terreno. La tecnologia hiperespectral o espectrometria de imagen ofrece la posibilidad potencial de caracterizar con precision el estado de los materiales que conforman las diversas superficies en base a su respuesta espectral. Este estado suele ser variable, mientras que las observaciones se producen en un numero limitado y para determinadas condiciones de iluminacion. Al aumentar el numero de bandas espectrales aumenta tambien el numero de muestras necesarias para definir espectralmente las clases en lo que se conoce como Maldicion de la Dimensionalidad o Efecto Hughes (Bellman, 1957), muestras habitualmente no disponibles y costosas de obtener, no hay mas que pensar en lo que ello implica en la Exploracion Planetaria. Bajo la definicion de anomalia en su sentido espectral como la respuesta significativamente diferente de un pixel de imagen respecto de su entorno, el objeto central abordado en la Tesis estriba primero en como reducir la dimensionalidad de la informacion en los datos hiperespectrales, discriminando la mas significativa para la deteccion de respuestas anomalas, y segundo, en establecer la relacion entre anomalias espectrales detectadas y lo que hemos denominado anomalias informacionales, es decir, anomalias que aportan algun tipo de informacion real de las superficies o materiales que las producen. En la deteccion de respuestas anomalas se asume un no conocimiento previo de los objetivos, de tal manera que los pixeles se separan automaticamente en funcion de su informacion espectral significativamente diferenciada respecto de un fondo que se estima, bien de manera global para toda la escena, bien localmente por segmentacion de la imagen. La metodologia desarrollada se ha centrado en la implicacion de la definicion estadistica del fondo espectral, proponiendo un nuevo enfoque que permite discriminar anomalias respecto fondos segmentados en diferentes grupos de longitudes de onda del espectro, explotando la potencialidad de separacion entre el espectro electromagnetico reflectivo y emisivo. Se ha estudiado la eficiencia de los principales algoritmos de deteccion de anomalias, contrastando los resultados del algoritmo RX (Reed and Xiaoli, 1990) adoptado como estandar por la comunidad cientifica, con el metodo UTD (Uniform Targets Detector), su variante RXD-UTD, metodos basados en subespacios SSRX (Subspace RX) y metodo basados en proyecciones de subespacios de imagen, como OSPRX (Orthogonal Subspace Projection RX) y PP (Projection Pursuit). Se ha desarrollado un nuevo metodo, evaluado y contrastado por los anteriores, que supone una variacion de PP y describe el fondo espectral mediante el analisis discriminante de bandas del espectro electromagnetico, separando las anomalias con el algortimo denominado Detector de Anomalias de Fondo Termico o DAFT aplicable a sensores que registran datos en el espectro emisivo. Se han evaluado los diferentes metodos de deteccion de anomalias en rangos del espectro electromagnetico del visible e infrarrojo cercano (Visible and Near Infrared-VNIR), infrarrojo de onda corta (Short Wavelenght Infrared-SWIR), infrarrojo medio (Meadle Infrared-MIR) e infrarrojo termico (Thermal Infrared-TIR). La respuesta de las superficies en las distintas longitudes de onda del espectro electromagnetico junto con su entorno, influyen en el tipo y frecuencia de las anomalias espectrales que puedan provocar. Es por ello que se han utilizado en la investigacion cubos de datos hiperepectrales procedentes de los sensores aeroportados cuya estrategia y diseno en la construccion espectrometrica de la imagen difiere. Se han evaluado conjuntos de datos de test de los sensores AHS (Airborne Hyperspectral System), HyMAP Imaging Spectrometer, CASI (Compact Airborne Spectrographic Imager), AVIRIS (Airborne Visible Infrared Imaging Spectrometer), HYDICE (Hyperspectral Digital Imagery Collection Experiment) y MASTER (MODIS/ASTER Simulator). Se han disenado experimentos sobre ambitos naturales, urbanos y semiurbanos de diferente complejidad. Se ha evaluado el comportamiento de los diferentes detectores de anomalias a traves de 23 tests correspondientes a 15 areas de estudio agrupados en 6 espacios o escenarios: Urbano - E1, Semiurbano/Industrial/Periferia Urbana - E2, Forestal - E3, Agricola - E4, Geologico/Volcanico - E5 y Otros Espacios Agua, Nubes y Sombras - E6. El tipo de sensores evaluados se caracteriza por registrar imagenes en un amplio rango de bandas, estrechas y contiguas, del espectro electromagnetico. La Tesis se ha centrado en el desarrollo de tecnicas que permiten separar y extraer automaticamente pixeles o grupos de pixeles cuya firma espectral difiere de manera discriminante de las que tiene alrededor, adoptando para ello como espacio muestral parte o el conjunto de las bandas espectrales en las que ha registrado radiancia el sensor hiperespectral. Un factor a tener en cuenta en la investigacion ha sido el propio instrumento de medida, es decir, la caracterizacion de los distintos subsistemas, sensores imagen y auxiliares, que intervienen en el proceso. Para poder emplear cuantitativamente los datos medidos ha sido necesario definir las relaciones espaciales y espectrales del sensor con la superficie observada y las potenciales anomalias y patrones objetivos de deteccion. Se ha analizado la repercusion que en la deteccion de anomalias tiene el tipo de sensor, tanto en su configuracion espectral como en las estrategias de diseno a la hora de registrar la radiacion prodecente de las superficies, siendo los dos tipos principales de sensores estudiados los barredores o escaneres de espejo giratorio (whiskbroom) y los barredores o escaneres de empuje (pushbroom). Se han definido distintos escenarios en la investigacion, lo que ha permitido abarcar una amplia variabilidad de entornos geomorfologicos y de tipos de coberturas, en ambientes mediterraneos, de latitudes medias y tropicales. En resumen, esta Tesis presenta una tecnica de deteccion de anomalias para datos hiperespectrales denominada DAFT en su variante de PP, basada en una reduccion de la dimensionalidad proyectando el fondo en un rango de longitudes de onda del espectro termico distinto de la proyeccion de las anomalias u objetivos sin firma espectral conocida. La metodologia propuesta ha sido probada con imagenes hiperespectrales reales de diferentes sensores y en diferentes escenarios o espacios, por lo tanto de diferente fondo espectral tambien, donde los resultados muestran los beneficios de la aproximacion en la deteccion de una gran variedad de objetos cuyas firmas espectrales tienen suficiente desviacion respecto del fondo. La tecnica resulta ser automatica en el sentido de que no hay necesidad de ajuste de parametros, dando resultados significativos en todos los casos. Incluso los objetos de tamano subpixel, que no pueden distinguirse a simple vista por el ojo humano en la imagen original, pueden ser detectados como anomalias. Ademas, se realiza una comparacion entre el enfoque propuesto, la popular tecnica RX y otros detectores tanto en su modalidad global como local. El metodo propuesto supera a los demas en determinados escenarios, demostrando su capacidad para reducir la proporcion de falsas alarmas. Los resultados del algoritmo automatico DAFT desarrollado, han demostrado la mejora en la definicion cualitativa de las anomalias espectrales que identifican a entidades diferentes en o bajo superficie, reemplazando para ello el modelo clasico de distribucion normal con un metodo robusto que contempla distintas alternativas desde el momento mismo de la adquisicion del dato hiperespectral. Para su consecucion ha sido necesario analizar la relacion entre parametros biofisicos, como la reflectancia y la emisividad de los materiales, y la distribucion espacial de entidades detectadas respecto de su entorno. Por ultimo, el algoritmo DAFT ha sido elegido como el mas adecuado para sensores que adquieren datos en el TIR, ya que presenta el mejor acuerdo con los datos de referencia, demostrando una gran eficacia computacional que facilita su implementacion en un sistema de cartografia que proyecte de forma automatica en un marco geografico de referencia las anomalias detectadas, lo que confirma un significativo avance hacia un sistema en lo que se denomina cartografia en tiempo real. The aim of this Thesis is to develop a specific methodology in order to be applied in automatic detection anomalies processes using hyperspectral data also called hyperspectral scenes, and to improve the classification processes. Several scenarios, areas and their relationship with surfaces and objects have been tested. The spectral characteristics of reflectance parameter and emissivity in the pattern recognition of urban materials in several hyperspectral scenes have also been tested. Spectral ranges of the visible-near infrared (VNIR), shortwave infrared (SWIR) and thermal infrared (TIR) from hyperspectral data cubes of AHS (Airborne Hyperspectral System), HyMAP Imaging Spectrometer, CASI (Compact Airborne Spectrographic Imager), AVIRIS (Airborne Visible Infrared Imaging Spectrometer), HYDICE (Hyperspectral Digital Imagery Collection Experiment) and MASTER (MODIS/ASTER Simulator) have been used in this research. It is assumed that there is not prior knowledge of the targets in anomaly detection. Thus, the pixels are automatically separated according to their spectral information, significantly differentiated with respect to a background, either globally for the full scene, or locally by the image segmentation. Several experiments on different scenarios have been designed, analyzing the behavior of the standard RX anomaly detector and different methods based on subspace, image projection and segmentation-based anomaly detection methods. Results and their consequences in unsupervised classification processes are discussed. Detection of spectral anomalies aims at extracting automatically pixels that show significant responses in relation of their surroundings. This Thesis deals with the unsupervised technique of target detection, also called anomaly detection. Since this technique assumes no prior knowledge about the target or the statistical characteristics of the data, the only available option is to look for objects that are differentiated from the background. Several methods have been developed in the last decades, allowing a better understanding of the relationships between the image dimensionality and the optimization of search procedures as well as the subpixel differentiation of the spectral mixture and its implications in anomalous responses. In other sense, image spectrometry has proven to be efficient in the characterization of materials, based on statistical methods using a specific reflection and absorption bands. Spectral configurations in the VNIR, SWIR and TIR have been successfully used for mapping materials in different urban scenarios. There has been an increasing interest in the use of high resolution data (both spatial and spectral) to detect small objects and to discriminate surfaces in areas with urban complexity. This has come to be known as target detection which can be either supervised or unsupervised. In supervised target detection, algorithms lean on prior knowledge, such as the spectral signature. The detection process for matching signatures is not straightforward due to the complications of converting data airborne sensor with material spectra in the ground. This could be further complicated by the large number of possible objects of interest, as well as uncertainty as to the reflectance or emissivity of these objects and surfaces. An important objective in this research is to establish relationships that allow linking spectral anomalies with what can be called informational anomalies and, therefore, identify information related to anomalous responses in some places rather than simply spotting differences from the background. The development in recent years of new hyperspectral sensors and techniques, widen the possibilities for applications in remote sensing of the Earth. Remote sensing systems measure and record electromagnetic disturbances that the surveyed objects induce in their surroundings, by means of different sensors mounted on airborne or space platforms. Map updating is important for management and decisions making people, because of the fast changes that usually happen in natural, urban and semi urban areas. It is necessary to optimize the methodology for obtaining the best from remote sensing techniques from hyperspectral data. The first problem with hyperspectral data is to reduce the dimensionality, keeping the maximum amount of information. Hyperspectral sensors augment considerably the amount of information, this allows us to obtain a better precision on the separation of material but at the same time it is necessary to calculate a bigger number of parameters, and the precision lowers with the increase in the number of bands. This is known as the Hughes effects (Bellman, 1957) . Hyperspectral imagery allows us to discriminate between a huge number of different materials however some land and urban covers are made up with similar material and respond similarly which produces confusion in the classification. The training and the algorithm used for mapping are also important for the final result and some properties of thermal spectrum for detecting land cover will be studied. In summary, this Thesis presents a new technique for anomaly detection in hyperspectral data called DAFT, as a PP's variant, based on dimensionality reduction by projecting anomalies or targets with unknown spectral signature to the background, in a range thermal spectrum wavelengths. The proposed methodology has been tested with hyperspectral images from different imaging spectrometers corresponding to several places or scenarios, therefore with different spectral background. The results show the benefits of the approach to the detection of a variety of targets whose spectral signatures have sufficient deviation in relation to the background. DAFT is an automated technique in the sense that there is not necessary to adjust parameters, providing significant results in all cases. Subpixel anomalies which cannot be distinguished by the human eye, on the original image, however can be detected as outliers due to the projection of the VNIR end members with a very strong thermal contrast. Furthermore, a comparison between the proposed approach and the well-known RX detector is performed at both modes, global and local. The proposed method outperforms the existents in particular scenarios, demonstrating its performance to reduce the probability of false alarms. The results of the automatic algorithm DAFT have demonstrated improvement in the qualitative definition of the spectral anomalies by replacing the classical model by the normal distribution with a robust method. For their achievement has been necessary to analyze the relationship between biophysical parameters such as reflectance and emissivity, and the spatial distribution of detected entities with respect to their environment, as for example some buried or semi-buried materials, or building covers of asbestos, cellular polycarbonate-PVC or metal composites. Finally, the DAFT method has been chosen as the most suitable for anomaly detection using imaging spectrometers that acquire them in the thermal infrared spectrum, since it presents the best results in comparison with the reference data, demonstrating great computational efficiency that facilitates its implementation in a mapping system towards, what is called, Real-Time Mapping.

Contribution of Malic Enzyme, Pyruvate Kinase, Phosphoenolpyruvate Carboxylase, and the Krebs Cycle to Respiration and Biosynthesis and to Intracellular pH Regulation during Hypoxia in Maize Root Tips Observed by Nuclear Magnetic Resonance Imaging and Gas Chromatography-Mass Spectrometry1

In vivo pyruvate synthesis by malic enzyme (ME) and pyruvate kinase and in vivo malate synthesis by phosphoenolpyruvate carboxylase and the Krebs cycle were measured by 13C incorporation from [1-13C]glucose into glucose-6-phosphate, alanine, glutamate, aspartate, and malate. These metabolites were isolated from maize (Zea mays L.) root tips under aerobic and hypoxic conditions. 13C-Nuclear magnetic resonance spectroscopy and gas chromatography-mass spectrometry were used to discern the positional isotopic distribution within each metabolite. This information was applied to a simple precursor-product model that enabled calculation of specific metabolic fluxes. In respiring root tips, ME was found to contribute only approximately 3% of the pyruvate synthesized, whereas pyruvate kinase contributed the balance. The activity of ME increased greater than 6-fold early in hypoxia, and then declined coincident with depletion of cytosolic malate and aspartate. We found that in respiring root tips, anaplerotic phosphoenolpyruvate carboxylase activity was high relative to ME, and therefore did not limit synthesis of pyruvate by ME. The significance of in vivo pyruvate synthesis by ME is discussed with respect to malate and pyruvate utilization by isolated mitochondria and intracellular pH regulation under hypoxia.

Salt diffusion and distribution in meat studied by Na-23 nuclear magnetic resonance imaging and relaxometry

This study introduces the use of combined Na-23 magnetic resonance imaging (MRI) and Na-23 NMR relaxometry for the study of meat curing. The diffusion of sodium ions into the meat was measured using Na-23 MRI on a 1 kg meat sample brined in 10% w/w NaCl for 3-100 h. Calculations revealed a diffusion coefficient of 1 x 10(-5) cm(2)/s after 3 h of curing and subsequently decreasing to 8 x 10(-6) cm(2)/s at longer curing times, suggesting that changes occur in the microscopic structure of the meat during curing. The microscopic mobility and distribution of sodium was measured using Na-23 relaxometry. Two sodium populations were observed, and with increasing length of curing time the relaxation times of these changed, reflecting a salt-induced swelling and increase in myofibrillar pore sizes. Accordingly, the present study demonstrated that pore size and thereby salt-induced swelling in meat can be assessed using Na-23 relaxometry.

A solvent-free matrix application method for matrix-assisted laser desorption/ionization imaging of small molecules

Matrix application continues to be a critical step in sample preparation for matrix-assisted laser desorption/ionization (MALDI) mass spectrometry imaging (MSI). Imaging of small molecules such as drugs and metabolites is particularly problematic because the commonly used washing steps to remove salts are usually omitted as they may also remove the analyte, and analyte spreading is more likely with conventional wet matrix application methods. We have developed a method which uses the application of matrix as a dry, finely divided powder, here referred to as dry matrix application, for the imaging of drug compounds. This appears to offer a complementary method to wet matrix application for the MALDI-MSI of small molecules, with the alternative matrix application techniques producing different ion profiles, and allows the visualization of compounds not observed using wet matrix application methods. We demonstrate its value in imaging clozapine from rat kidney and 4-bromophenyl-1,4-diazabicyclo(3.2.2)nonane-4-carboxylic acid from rat brain. In addition, exposure of the dry matrix coated sample to a saturated moist atmosphere appears to enhance the visualization of a different set of molecules.

Use of a solvent-free dry matrix coating for quantitative matrix-assisted laser desorption ionization imaging of 4-bromophenyl-1,4-diazabicyclo(3.2.2)nonane-4-carboxylate in rat brain and quantitative analysis of the drug from laser microdissected tissue regions

A dry matrix application for matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI MSI) was used to profile the distribution of 4-bromophenyl-1,4-diazabicyclo(3.2.2)nonane-4-carboxylate, monohydrochloride (BDNC, SSR180711) in rat brain tissue sections. Matrix application involved applying layers of finely ground dry alpha-cyano-4-hydroxycinnamic acid (CHCA) to the surface of tissue sections thaw mounted onto MALDI targets. It was not possible to detect the drug when applying matrix in a standard aqueous-organic solvent solution. The drug was detected at higher concentrations in specific regions of the brain, particularly the white matter of the cerebellum. Pseudomultiple reaction monitoring imaging was used to validate that the observed distribution was the target compound. The semiquantitative data obtained from signal intensities in the imaging was confirmed by laser microdissection of specific regions of the brain directed by the imaging, followed by hydrophilic interaction chromatography in combination with a quantitative high-resolution mass spectrometry method. This study illustrates that a dry matrix coating is a valuable and complementary matrix application method for analysis of small polar drugs and metabolites that can be used for semiquantitative analysis.

Study Of The Homogeneity Of Drug Loaded In Polymeric Films Using Near-infrared Chemical Imaging And Split-plot Design.

Split-plot design (SPD) and near-infrared chemical imaging were used to study the homogeneity of the drug paracetamol loaded in films and prepared from mixtures of the biocompatible polymers hydroxypropyl methylcellulose, polyvinylpyrrolidone, and polyethyleneglycol. The study was split into two parts: a partial least-squares (PLS) model was developed for a pixel-to-pixel quantification of the drug loaded into films. Afterwards, a SPD was developed to study the influence of the polymeric composition of films and the two process conditions related to their preparation (percentage of the drug in the formulations and curing temperature) on the homogeneity of the drug dispersed in the polymeric matrix. Chemical images of each formulation of the SPD were obtained by pixel-to-pixel predictions of the drug using the PLS model of the first part, and macropixel analyses were performed for each image to obtain the y-responses (homogeneity parameter). The design was modeled using PLS regression, allowing only the most relevant factors to remain in the final model. The interpretation of the SPD was enhanced by utilizing the orthogonal PLS algorithm, where the y-orthogonal variations in the design were separated from the y-correlated variation.

Feasibility And Reproducibility Of Diffusion-weighted Magnetic Resonance Imaging Of The Fetal Brain In Twin-twin Transfusion Syndrome.

The aim of this study is to test the feasibility and reproducibility of diffusion-weighted magnetic resonance imaging (DW-MRI) evaluations of the fetal brains in cases of twin-twin transfusion syndrome (TTTS). From May 2011 to June 2012, 24 patients with severe TTTS underwent MRI scans for evaluation of the fetal brains. Datasets were analyzed offline on axial DW images and apparent diffusion coefficient (ADC) maps by two radiologists. The subjective evaluation was described as the absence or presence of water diffusion restriction. The objective evaluation was performed by the placement of 20-mm(2) circular regions of interest on the DW image and ADC maps. Subjective interobserver agreement was assessed by the kappa correlation coefficient. Objective intraobserver and interobserver agreements were assessed by proportionate Bland-Altman tests. Seventy-four DW-MRI scans were performed. Sixty of them (81.1%) were considered to be of good quality. Agreement between the radiologists was 100% for the absence or presence of diffusion restriction of water. For both intraobserver and interobserver agreement of ADC measurements, proportionate Bland-Altman tests showed average percentage differences of less than 1.5% and 95% CI of less than 18% for all sites evaluated. Our data demonstrate that DW-MRI evaluation of the fetal brain in TTTS is feasible and reproducible.

Petroleomics By Electrospray Ionization Ft-icr Mass Spectrometry Coupled To Partial Least Squares With Variable Selection Methods: Prediction Of The Total Acid Number Of Crude Oils.

Negative-ion mode electrospray ionization, ESI(-), with Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) was coupled to a Partial Least Squares (PLS) regression and variable selection methods to estimate the total acid number (TAN) of Brazilian crude oil samples. Generally, ESI(-)-FT-ICR mass spectra present a power of resolution of ca. 500,000 and a mass accuracy less than 1 ppm, producing a data matrix containing over 5700 variables per sample. These variables correspond to heteroatom-containing species detected as deprotonated molecules, [M - H](-) ions, which are identified primarily as naphthenic acids, phenols and carbazole analog species. The TAN values for all samples ranged from 0.06 to 3.61 mg of KOH g(-1). To facilitate the spectral interpretation, three methods of variable selection were studied: variable importance in the projection (VIP), interval partial least squares (iPLS) and elimination of uninformative variables (UVE). The UVE method seems to be more appropriate for selecting important variables, reducing the dimension of the variables to 183 and producing a root mean square error of prediction of 0.32 mg of KOH g(-1). By reducing the size of the data, it was possible to relate the selected variables with their corresponding molecular formulas, thus identifying the main chemical species responsible for the TAN values.

Identification Of Corynebacterium Spp. Isolated From Bovine Intramammary Infections By Matrix-assisted Laser Desorption Ionization-time Of Flight Mass Spectrometry.

Corynebacterium species (spp.) are among the most frequently isolated pathogens associated with subclinical mastitis in dairy cows. However, simple, fast, and reliable methods for the identification of species of the genus Corynebacterium are not currently available. This study aimed to evaluate the usefulness of matrix-assisted laser desorption ionization/mass spectrometry (MALDI-TOF MS) for identifying Corynebacterium spp. isolated from the mammary glands of dairy cows. Corynebacterium spp. were isolated from milk samples via microbiological culture (n=180) and were analyzed by MALDI-TOF MS and 16S rRNA gene sequencing. Using MALDI-TOF MS methodology, 161 Corynebacterium spp. isolates (89.4%) were correctly identified at the species level, whereas 12 isolates (6.7%) were identified at the genus level. Most isolates that were identified at the species level with 16 S rRNA gene sequencing were identified as Corynebacterium bovis (n=156; 86.7%) were also identified as C. bovis with MALDI-TOF MS. Five Corynebacterium spp. isolates (2.8%) were not correctly identified at the species level with MALDI-TOF MS and 2 isolates (1.1%) were considered unidentified because despite having MALDI-TOF MS scores >2, only the genus level was correctly identified. Therefore, MALDI-TOF MS could serve as an alternative method for species-level diagnoses of bovine intramammary infections caused by Corynebacterium spp.

Propylthiouracil Quantification In Human Plasma By High-performance Liquid Chromatography Coupled With Electrospray Tandem Mass Spectrometry: Application In A Bioequivalence Study.

A rapid, sensitive and specific method for quantifying propylthiouracil in human plasma using methylthiouracil as the internal standard (IS) is described. The analyte and the IS were extracted from plasma by liquid-liquid extraction using an organic solvent (ethyl acetate). The extracts were analyzed by high performance liquid chromatography coupled with electrospray tandem mass spectrometry (HPLC-MS/MS) in negative mode (ES-). Chromatography was performed using a Phenomenex Gemini C18 5μm analytical column (4.6mm×150mm i.d.) and a mobile phase consisting of methanol/water/acetonitrile (40/40/20, v/v/v)+0.1% of formic acid. For propylthiouracil and I.S., the optimized parameters of the declustering potential, collision energy and collision exit potential were -60 (V), -26 (eV) and -5 (V), respectively. The method had a chromatographic run time of 2.5min and a linear calibration curve over the range 20-5000ng/mL. The limit of quantification was 20ng/mL. The stability tests indicated no significant degradation. This HPLC-MS/MS procedure was used to assess the bioequivalence of two propylthiouracil 100mg tablet formulations in healthy volunteers of both sexes in fasted and fed state. The geometric mean and 90% confidence interval CI of Test/Reference percent ratios were, without and with food, respectively: 109.28% (103.63-115.25%) and 115.60% (109.03-122.58%) for Cmax, 103.31% (100.74-105.96%) and 103.40% (101.03-105.84) for AUClast. This method offers advantages over those previously reported, in terms of both a simple liquid-liquid extraction without clean-up procedures, as well as a faster run time (2.5min). The LOQ of 20ng/mL is well suited for pharmacokinetic studies. The assay performance results indicate that the method is precise and accurate enough for the routine determination of the propylthiouracil in human plasma. The test formulation with and without food was bioequivalent to reference formulation. Food administration increased the Tmax and decreased the bioavailability (Cmax and AUC).

Screening The Life Cycle Of Schistosoma Mansoni Using High-resolution Mass Spectrometry.

Schistosomiasis is a common tropical disease caused by Schistosoma species Schistosomiasis' pathogenesis is known to vary according to the worms' strain. Moreover, high parasitical virulence is directly related to eggs release and granulomatous inflammation in the host's organs. This virulence might be influenced by different classes of molecules, such as lipids. Therefore, better understanding of the metabolic profile of these organisms is necessary, especially for an increased potential of unraveling strain virulence mechanisms and resistance to existing treatments. In this report, direct-infusion electrospray high-resolution mass spectrometry (ESI(+)-HRMS) along with the lipidomic platform were employed to rapidly characterize and differentiate two Brazilian S. mansoni strains (BH and SE) in three stages of their life cycle: eggs, miracidia and cercariae, with samples from experimental animals (Swiss/SPF mice). Furthermore, urine samples of the infected and uninfected mice were analyzed to assess the possibility of direct diagnosis. All samples were differentiated using multivariate data analysis, PCA, which helped electing markers from distinct lipid classes; phospholipids, diacylglycerols and triacylglycerols, for example, clearly presented different intensities in some stages and strains, as well as in urine samples. This indicates that biochemical characterization of S. mansoni may help narrowing-down the investigation of new therapeutic targets according to strain composition and aggressiveness of disease. Interestingly, lipid profile of infected mice urine varies when compared to control samples, indicating that direct diagnosis of schistosomiasis from urine may be feasible.

Membrane Lipid Profile Monitored By Mass Spectrometry Detected Differences Between Fresh And Vitrified In Vitro-produced Bovine Embryos.

Summary This study aimed to evaluate the impact of vitrification on membrane lipid profile obtained by mass spectrometry (MS) of in vitro-produced bovine embryos. Matrix-assisted laser desorption ionization-mass spectrometry (MALDI-MS) has been used to obtain individual embryo membrane lipid profiles. Due to conditions of analysis, mainly membrane lipids, most favorably phosphatidylcholines (PCs) and sphingomyelins (SMs) have been detected. The following ions described by their mass-to-charge ratio (m/z) and respective attribution presented increased relative abundance (1.2-20×) in the vitrified group: 703.5 [SM (16:0) + H]+; 722.5 [PC (40:3) + Na]+; 758.5 [PC (34:2) + H]+; 762.5 [PC (34:0) + H]+; 790.5 [PC (36:0) + H]+ and 810.5 [PC (38:4) + H]+ and/or [PC (36:1) + Na]+. The ion with a m/z 744.5 [PCp (34:1) and/or PCe (34:2)] was 3.4-fold more abundant in the fresh group. Interestingly, ions with m/z 722.5 or 744.5 indicate the presence of lipid species, which are more resistant to enzymatic degradation as they contain fatty acyl residues linked through ether type bonds (alkyl ether or plasmalogens, indicated by the lowercase 'e' and 'p', respectively) to the glycerol structure. The results indicate that cryopreservation impacts the membrane lipid profile, and that these alterations can be properly monitored by MALDI-MS. Membrane lipids can therefore be evaluated by MALDI-MS to monitor the effect of cryopreservation on membrane lipids, and to investigate changes in lipid profile that may reflect the metabolic response to the cryopreservation stress or changes in the environmental conditions.

Phtx-ii A Basic Myotoxic Phospholipase A2 From Porthidium Hyoprora Snake Venom, Pharmacological Characterization And Amino Acid Sequence By Mass Spectrometry.

A monomeric basic PLA2 (PhTX-II) of 14149.08 Da molecular weight was purified to homogeneity from Porthidium hyoprora venom. Amino acid sequence by in tandem mass spectrometry revealed that PhTX-II belongs to Asp49 PLA2 enzyme class and displays conserved domains as the catalytic network, Ca2+-binding loop and the hydrophobic channel of access to the catalytic site, reflected in the high catalytic activity displayed by the enzyme. Moreover, PhTX-II PLA2 showed an allosteric behavior and its enzymatic activity was dependent on Ca2+. Examination of PhTX-II PLA2 by CD spectroscopy indicated a high content of alpha-helical structures, similar to the known structure of secreted phospholipase IIA group suggesting a similar folding. PhTX-II PLA2 causes neuromuscular blockade in avian neuromuscular preparations with a significant direct action on skeletal muscle function, as well as, induced local edema and myotoxicity, in mice. The treatment of PhTX-II by BPB resulted in complete loss of their catalytic activity that was accompanied by loss of their edematogenic effect. On the other hand, enzymatic activity of PhTX-II contributes to this neuromuscular blockade and local myotoxicity is dependent not only on enzymatic activity. These results show that PhTX-II is a myotoxic Asp49 PLA2 that contributes with toxic actions caused by P. hyoprora venom.