VIDA: a virus database system for the organization of animal virus genome open reading frames

VIDA is a new virus database that organizes open reading frames (ORFs) from partial and complete genomic sequences from animal viruses. Currently VIDA includes all sequences from GenBank for Herpesviridae, Coronaviridae and Arteriviridae. The ORFs are organized into homologous protein families, which are identified on the basis of sequence similarity relationships. Conserved sequence regions of potential functional importance are identified and can be retrieved as sequence alignments. We use a controlled taxonomical and functional classification for all the proteins and protein families in the database. When available, protein structures that are related to the families have also been included. The database is available for online search and sequence information retrieval at http://www.biochem.ucl.ac.uk/bsm/virus_database/VIDA.html.

Multilingual extension of a temporal expression normalizer using annotated corpora

This paper presents the automatic extension to other languages of TERSEO, a knowledge-based system for the recognition and normalization of temporal expressions originally developed for Spanish. TERSEO was first extended to English through the automatic translation of the temporal expressions. Then, an improved porting process was applied to Italian, where the automatic translation of the temporal expressions from English and from Spanish was combined with the extraction of new expressions from an Italian annotated corpus. Experimental results demonstrate how, while still adhering to the rule-based paradigm, the development of automatic rule translation procedures allowed us to minimize the effort required for porting to new languages. Relying on such procedures, and without any manual effort or previous knowledge of the target language, TERSEO recognizes and normalizes temporal expressions in Italian with good results (72% precision and 83% recall for recognition).

A knowledge-based textual entailment approach applied to the QA answer validation at CLEF 2006

The Answer Validation Exercise (AVE) is a pilot track within the Cross-Language Evaluation Forum (CLEF) 2006. The AVE competition provides an evaluation frame- work for answer validations in Question Answering (QA). In our participation in AVE, we propose a system that has been initially used for other task as Recognising Textual Entailment (RTE). The aim of our participation is to evaluate the improvement our system brings to QA. Moreover, due to the fact that these two task (AVE and RTE) have the same main idea, which is to find semantic implications between two fragments of text, our system has been able to be directly applied to the AVE competition. Our system is based on the representation of the texts by means of logic forms and the computation of semantic comparison between them. This comparison is carried out using two different approaches. The first one managed by a deeper study of the Word- Net relations, and the second uses the measure defined by Lin in order to compute the semantic similarity between the logic form predicates. Moreover, we have also designed a voting strategy between our system and the MLEnt system, also presented by the University of Alicante, with the aim of obtaining a joint execution of the two systems developed at the University of Alicante. Although the results obtained have not been very high, we consider that they are quite promising and this supports the fact that there is still a lot of work on researching in any kind of textual entailment.

The University of Alicante at CL-SR Track

In this paper, the new features that IR-n system applies on the topic processing for CL-SR are described. This set of features are based on applying logic forms to topics with the aim of incrementing the weight of topic terms according to a set of syntactic rules.

Applying logic forms and statistical methods to CL-SR performance

This paper describes a CL-SR system that employs two different techniques: the first one is based on NLP rules that consist on applying logic forms to the topic processing while the second one basically consists on applying the IR-n statistical search engine to the spoken document collection. The application of logic forms to the topics allows to increase the weight of topic terms according to a set of syntactic rules. Thus, the weights of the topic terms are used by IR-n system in the information retrieval process.

AliQAn, Spanish QA system at multilingual QA@CLEF-2008

Comunicación presentada en Cross-Language Evaluation Forum (CLEF 2008), Aarhus, Denmark, September 17-19, 2008.

Tratamiento de la dimensión espacial en el texto y su aplicación a la recuperación de información

Proyecto emergente centrado en la desambiguación de topónimos y la detección del foco geográfico en el texto. La finalidad es mejorar el rendimiento de los sistemas de recuperación de información geográfica. Se describen los problemas abordados, la hipótesis de trabajo, las tareas a realizar y los objetivos parciales alcanzados.

Una aproximación basada en corpus para la detección del foco geográfico en el texto

El foco geográfico de un documento identifica el lugar o lugares en los que se centra el contenido del texto. En este trabajo se presenta una aproximación basada en corpus para la detección del foco geográfico en el texto. Frente a otras aproximaciones que se centran en el uso de información puramente geográfica para la detección del foco, nuestra propuesta emplea toda la información textual existente en los documentos del corpus de trabajo, partiendo de la hipótesis de que la aparición de determinados personajes, eventos, fechas e incluso términos comunes, pueden resultar fundamentales para esta tarea. Para validar nuestra hipótesis, se ha realizado un estudio sobre un corpus de noticias geolocalizadas que tuvieron lugar entre los años 2008 y 2011. Esta distribución temporal nos ha permitido, además, analizar la evolución del rendimiento del clasificador y de los términos más representativos de diferentes localidades a lo largo del tiempo.

Creación automática de sistemas de búsqueda de respuestas en dominios restringidos

Los sistemas de búsqueda de respuestas (BR) se pueden considerar como potenciales sucesores de los buscadores tradicionales de información en la Web. Para que sean precisos deben adaptarse a dominios concretos mediante el uso de recursos semánticos adecuados. La adaptación no es una tarea trivial, ya que deben integrarse e incorporarse a sistemas de BR existentes varios recursos heterogéneos relacionados con un dominio restringido. Se presenta la herramienta Maraqa, cuya novedad radica en el uso de técnicas de ingeniería del software, como el desarrollo dirigido por modelos, para automatizar dicho proceso de adaptación a dominios restringidos. Se ha evaluado Maraqa mediante una serie de experimentos (sobre el dominio agrícola) que demuestran su viabilidad, mejorando en un 29,5% la precisión del sistema adaptado.

Enrichment of the Phenotypic and Genotypic Data Warehouse analysis using Question Answering systems to facilitate the decision making process in cereal breeding programs

Currently there are an overwhelming number of scientific publications in Life Sciences, especially in Genetics and Biotechnology. This huge amount of information is structured in corporate Data Warehouses (DW) or in Biological Databases (e.g. UniProt, RCSB Protein Data Bank, CEREALAB or GenBank), whose main drawback is its cost of updating that makes it obsolete easily. However, these Databases are the main tool for enterprises when they want to update their internal information, for example when a plant breeder enterprise needs to enrich its genetic information (internal structured Database) with recently discovered genes related to specific phenotypic traits (external unstructured data) in order to choose the desired parentals for breeding programs. In this paper, we propose to complement the internal information with external data from the Web using Question Answering (QA) techniques. We go a step further by providing a complete framework for integrating unstructured and structured information by combining traditional Databases and DW architectures with QA systems. The great advantage of our framework is that decision makers can compare instantaneously internal data with external data from competitors, thereby allowing taking quick strategic decisions based on richer data.

Una aproximación a la recomendación de artículos científicos según su grado de especificidad

En este artículo se presenta un método para recomendar artículos científicos teniendo en cuenta su grado de generalidad o especificidad. Este enfoque se basa en la idea de que personas menos expertas en un tema preferirían leer artículos más generales para introducirse en el mismo, mientras que personas más expertas preferirían artículos más específicos. Frente a otras técnicas de recomendación que se centran en el análisis de perfiles de usuario, nuestra propuesta se basa puramente en el análisis del contenido. Presentamos dos aproximaciones para recomendar artículos basados en el modelado de tópicos (Topic Modelling). El primero de ellos se basa en la divergencia de tópicos que se dan en los documentos, mientras que el segundo se basa en la similitud que se dan entre estos tópicos. Con ambas medidas se consiguió determinar lo general o específico de un artículo para su recomendación, superando en ambos casos a un sistema de recuperación de información tradicional.

User's guide to EUREKA and EURUP /

Bibliography: p. 95.

Notes on AVL trees /

"Written as supplementary material for a course in data structures given by the Dept. of Computer Science of the University of Illinois at Urbana-Champaign, during the second semester of the 1970-71 academic year"--Leaf 1.

EDGAR : a status report /

"June 30, 1987."

Thesaurus for SOYA : computerized bibliographic database on soybean utilization, processing, marketing nutrition, production, and history, 1100 B.C. to the 1980s /

Mode of access: Internet.