Sistemas radiolarios: geometrías y arquitecturas derivadas

Uno de los temas más importantes dentro del debate contemporáneo, es el que se refiere a la sostenibilidad a largo plazo de la sociedad tal y como la entendemos hoy. El ser humano está recuperando la sensibilidad perdida que le concebía como una pieza más dentro del ciclo natural de la vida. Por fin hemos entendido que no podemos ser auto suficientes e independientes del entorno natural que nos rodea. Más allá del respeto y del cuidado, está abierta la puerta del conocimiento infinito que nos brinda la naturaleza a todos los niveles y a todas las escalas. Dentro de la disciplina arquitectónica han existido ejemplos como Antoni Gaudí o Frei Otto que han referenciado su obra en el mundo Natural, encontrando en él las estrategias y bases para el diseño arquitectónico. Sin embargo han sido una minoría dentro del enorme elenco de arquitectos defensores del ángulo recto. En las últimas décadas, la tendencia está cambiando. No nos referimos tanto a la sensibilidad creciente por conseguir una mayor eficiencia energética que ha llevado a una puesta en valor de la arquitectura vernácula, trasladando su sabiduría a las estrategias bioclimáticas. Nos referimos a un caso específico dentro del amplio abanico de formas arquitectónicas que han aparecido gracias a la incorporación de las herramientas computacionales en el diseño y la producción. Las arquitecturas que nos interesan son las que aprovechan estas técnicas para analizar e interpretar las estrategias complejas y altamente eficientes que encontramos en la naturaleza, y trasladarlas a la disciplina arquitectónica. Esta tendencia que se enmarca dentro de la Biomímesis o Biomimética es conocida con el nombre de Bioarquitectura. La presente tesis trata de morfología y sobre todo de morfogénesis. El término morfología se refiere al estudio de una forma concreta que nos permite entender un caso específico, nuestro foco de atención se centra sin embargo en la morfogénesis, es decir, en el estudio de los procesos de generación de esas formas, para poder reproducir patrones y generar abanicos de casos adaptables y reconfigurables. El hecho de estudiar la forma no quiere decir que ésta sea una tesis “formalista” con la connotación peyorativa y gestual que se le suele atribuir a este término. La investigación concibe el concepto de forma como lo hace el mundo natural: forma como síntesis de eficiencia. No hay ninguna forma natural gratuita, que no cumpla una función determinada y que no se desarrolle con el mínimo material y gaste la mínima energía posible. Este afán por encontrar la “forma eficaz” es lo que nos hace traspasar la frontera de la arquitectura formalista. El camino de investigación morfológica se traza, como el título de la tesis indica, siguiendo el hilo conductor concreto de los radiolarios. Estos microorganismos unicelulares poseen unos esqueletos tan complejos que para poder entender su morfología es necesario establecer un amplio recorrido que abarca más de 4.000 años de conocimiento humano. Desde el descubrimiento de los sólidos platónicos, poliedros que configuran muchas de las formas globales de estos esqueletos; hasta la aplicación de los algoritmos generativos, que permiten entender y reproducir los patrones de comportamiento que existen detrás de los sistemas de compactación y teselación irregular de los esqueletos radiolarios. La tesis no pretende plantear el problema desde un punto de vista biológico, ni paleontológico, aunque inevitablemente en el primer capítulo se realiza un análisis referenciado del estado del conocimiento científico actual. Sí se analizan en mayor profundidad cuestiones morfológicas y se tratan los diferentes posicionamientos desde los cuales estos microorganismos han servido de referencia en la disciplina arquitectónica. Además encontramos necesario analizar otros patrones naturales que comparten estrategias generativas con los esqueletos radiolarios. Como ya hemos apuntado, en el segundo capítulo se aborda un recorrido desde las geometrías más básicas a las más complejas, que tienen relación con las estrategias de generación de las formas detectadas en los microorganismos. A su vez, el análisis de estas geometrías se intercala con ejemplos de aplicaciones dentro de la arquitectura, el diseño y el arte. Finalizando con un cronograma que sintetiza y relaciona las tres vías de investigación abordadas: natural, geométrica y arquitectónica. Tras los dos capítulos centrales, el capítulo final recapitula las estrategias analizadas y aplica el conocimiento adquirido en la tesis, mediante la realización de diferentes prototipos que abarcan desde el dibujo analítico tradicional, a la fabricación digital y el diseño paramétrico, pasando por modelos analógicos de escayola, barras metálicas, resina, silicona, látex, etc. ABSTRACT One of the most important issues in the contemporary debate, is the one concerning the long-term sustainability of society as we understand it today. The human being is recovering the lost sensitivity that conceived us as part of the natural cycle of life. We have finally understood that we cannot be self-sufficient and independent of the natural environment which surrounds us. Beyond respect and care, we’ll find that the gateway to the infinite knowledge that nature provides us at all levels and at all scales is open. Within the architectural discipline, there have been remarkable examples such as Antoni Gaudí or Frei Otto who have inspired their work in the natural world. Both, found in nature the strategies and basis of their architectural designs. However, they have been a minority within the huge cast of architects defenders of the right angle. In recent decades, the trend is changing. We are not referring to the growing sensitivity in trying to achieve energy efficiency that has led to an enhancement of vernacular architecture, transferring its wisdom to bioclimatic strategies. We refer to a specific case within the wide range of architectural forms that have appeared thanks to the integration of computer tools in both design and production processes. We are interested in architectures that exploit these techniques to analyse and interpret the complex and highly efficient strategies found in nature, and shift them to the discipline of architecture. This trend, which is being implemented in the framework of the Biomimicry or biomimetics, is called Bioarchitecture. This thesis deals with morphology and more specifically with morphogenesis. Morphology is the study of a concrete form that allows us to understand a specific case. However, our focus is centered in morphogenesis or, in other words, the study of the processes of generation of these forms, in order to replicate patterns and generate a range of adaptable and reconfigurable cases. The fact of studying shapes does not mean that this is a “formalistic” thesis with the pejorative connotation that is often attributed to this term. This study conceives the concept of shape as Nature does: as a synthesis of efficiency. There is no meaningless form in nature. Furthermore, forms and shapes in nature play a particular role and are developed with minimum energetic consumption. This quest to find the efficient shape is what makes us go beyond formalistic architecture. The road of morphological investigation is traced, as the title of the thesis suggests, following the thread of radiolaria. These single-cell microorganisms possess very complex skeletons, so to be able to understand their morphology we must establish a wide spectrum which spans throughout more than 4.000 years of human knowledge. From the discovery of the platonic solids, polyhedrons which configure a huge range of global shapes of these skeletons, through the application of generative algorithms which allow us to understand and recreate the behavioral patterns behind the systems of compression and irregular tessellation of the radiolarian skeletons. The thesis does not pretend to lay out the problem from a biological, paleontological standpoint, although inevitably the first chapter is developed through an analysis in reference to the current state of the science. A deeper analysis of morphological aspects and different positionings is taken into account where these microorganisms have served as reference in the architectonic discipline. In addition we find necessary to analyse other natural patterns which share generative strategies with radiolarian skeletons. Aforementioned, in the second chapter an itinerary of the most basic geometries to the more complex ones is addressed. These are related, in this chapter, to the generative strategies of the shapes found in microorganisms. At the same time, the analysis of these geometries is placed among examples of applications inside the fields of architecture, design and the arts. To come to an end, a time chart synthesizes and relates the three investigation paths addressed: natural, geometrical and architectonic. After the two central chapters, the final chapter summarises the strategies analysed and applies the knowledge acquired throughout the thesis. This final chapter is shaped by the realization of different prototypes which range from traditional analytical drawings, to digital fabrication and parametric design, going through plaster analogical models, metal bars, resin, silicone, latex, etc.

Caracterización geométrica y lumínica de los atrios incorporados en los edificios de Santiago de Chile

El atrio incorporado en los edificios ha sido un recurso espacial que tempranamente se difundió a nivel global, siendo adoptado por las distintas arquitecturas locales en gran parte del mundo. Su masificación estuvo favorecida primero por la rápida evolución de la tecnología del acero y el vidrio, a partir del siglo XIX, y en segundo termino por el posterior desarrollo del hormigón armado. Otro aspecto que explica tal aceptación en la arquitectura contemporánea, es de orden social y radica en la llamativa cavidad del espacio describiendo grandes dimensiones y favoreciendo con ello, el desarrollo de una multiplicidad de usos en su interior que antes eran impensados. Al interior del atrio, la luz natural es clave en las múltiples vivencias que alberga y sea tal vez la condición ambiental más valorada, ya que entrega una sensación de bienestar al conectarnos visualmente con el ambiente natural. Por esta razón de acuerdo al método hipotético deductivo, se evaluaron los efectos de la configuración geométrica, la cubierta y la orientación en el desempeño de la iluminación natural en la planta baja, a partir un modelo extraído desde el inventario de los edificios atrio construidos en Santiago de Chile, en los últimos 30 años que fue desarrollado en el capitulo 2. El análisis cuantitativo de los edificios inventariados se elaboró en el capítulo 3, considerando las dimensiones de los atrios. Simultáneamente fueron clasificados los aspectos constructivos, los materiales y las características del ambiente interior de cada edificio. En esta etapa además, fueron identificadas las variables de estudio de las proporciones geométricas de la cavidad del atrio con los coeficientes de aspecto de las proporciones, en planta (PAR), en corte (SAR) y de la cavidad según (WI), (AR) y (RI). Del análisis de todos estos parámetros se extrajo el modelo de prueba. El enfoque del estudio del capítulo 4 fue la iluminación natural, se revisaron los conceptos y el comportamiento en el atrio, a partir de un modelo físico construido a escala para registro de la iluminancia bajo cielo soleado de la ciudad. Más adelante se construyó el modelo en ambiente virtual, relacionando las variables determinadas por la geometría de la cavidad y el cerramiento superior; examinándose de esta manera distintas transparencias, proporciones de apertura, en definitiva se evaluó un progresivo cerramiento de las aberturas, verificando el ingreso de la luz y disponibilidad a nivel de piso con la finalidad, de proveer lineamientos útiles en una primera etapa del diseño arquitectónico. Para el análisis de la iluminación natural se revisaron diferentes métodos de cálculo con el propósito de evaluar los niveles de iluminancia en un plano horizontal al interior del atrio. El primero de ellos fue el Factor de Luz Día (FLD) que corresponde, a la proporción de la iluminancia en un punto de evaluación interior respecto, la cantidad proveniente del exterior bajo cielo nublado, a partir de la cual se obtuvo resultados que revelaron la alta luminosidad del cielo nublado de la ciudad. Además fueron evaluadas las recientes métricas dinámicas que dan cuenta, de la cantidad de horas en las cuales de acuerdo a los extensos registros meteorológico de la ciudad, permitieron obtener el porcentajes de horas dentro de las cuales se cumplió el estándar de iluminancia requerido, llamado autonomía lumínica (DA) o mejor aún se permanece dentro de un rango de comodidad visual en el interior del atrio referido a la iluminancia diurna útil (UDI). En el Capítulo 5 se exponen los criterios aplicados al modelo de estudio y cada una de las variantes de análisis, además se profundizó en los antecedentes y procedencia de las fuentes de los registros climáticos utilizados en las simulaciones llevadas a cabo en el programa Daysim operado por Radiance. Que permitieron evaluar el desempeño lumínico y la precisión, de cada uno de los resultados para comprobar la disponibilidad de iluminación natural a través de una matriz. En una etapa posterior se discutieron los resultados, mediante la comparación de los datos logrados según cada una de las metodologías de simulación aplicada. Finalmente se expusieron las conclusiones y futuras lineas de trabajo, las primeras respecto el dominio del atrio de cuatro caras, la incidencia del control de cerramiento de la cubierta y la relación establecida con la altura; indicando en lo específico que las mediciones de iluminancia bajo el cielo soleado de verano, permitieron aclarar, el uso de la herramienta de simulación y método basado en el clima local, que debido a su reciente desarrollo, orienta a futuras líneas de trabajo profundizando en la evaluación dinámica de la iluminancia contrastado con monitorización de casos. ABSTRACT Atriums incorporated into buildings have been a spatial resource that quickly spread throughout the globe, being adopted by several local architecture methods in several places. Their widespread increase was highly favored, in the first place, with the rapid evolution of steel and glass technologies since the nineteen century, and, in second place, by the following development of reinforced concrete. Another issue that explains this success into contemporary architecture is associated with the social approach, and it resides in the impressive cavity that describes vast dimensions, allowing the development of multiple uses in its interior that had never been considered before. Inside the atrium, daylight it is a key element in the many experiences that involves and it is possibly the most relevant environmental factor, since it radiates a feeling of well-being by uniting us visually with the natural environment. It is because of this reason that, following the hypothetical deductive method, the effects in the performance of daylight on the floor plan were evaluated considering the geometric configuration, the deck and orientation factors. This study was based in a model withdrawn from the inventory of atrium buildings that were constructed in Santiago de Chile during the past thirty years, which will be explained later in chapter 2. The quantitative analysis of the inventory of those buildings was elaborated in chapter 3, considering the dimensions of the atriums. Simultaneously, several features such as construction aspects, materials and environmental qualities were identified inside of each building. At this stage, it were identified the variables of the geometric proportions of the atrium’s cavity with the plan aspect ratio of proportions in first plan (PAR), in section (SAR) and cavity according to well index (WI), aspect ratio (AR) and room index (RI). An experimental model was obtained from the analysis of all the mentioned parameters. The main focus of the study developed in chapter 4 is daylight. The atrium’s concept and behavior were analyzed from a physical model built under scale to register the illuminances under clear, sunny sky of the city. Later on, this physical model was built in a virtual environment, connecting the variables determined by the geometry of the cavity and the superior enclosure, allowing the examination of transparencies and opening proportions. To summarize, this stage consisted on evaluating a progressive enclosure of the openings, checking the access of natural light and its availability at the atrium floor, in an effort to provide useful guidelines during the first stage of the architectural design. For the analysis of natural lighting, several calculations methods were used in order to determine the levels of illuminances in a horizontal plane inside of the atrium. The first of these methods is the Daylight Factor (DF), which consists in the proportion of light in an evaluation interior place with the amount of light coming from the outside in a cloudy day. Results determined that the cloudy sky of the city has high levels of luminosity. In addition, the recent dynamic metrics were evaluated which reflects the hours quantity. According to the meteorological records of the city’s climate, the standard of illuminance- a standard measure called Daylight Autonomy (DA) – was met. This is even better when the results stay in the line of visual convenience within the atrium, which is referred to as Useful Daylight Illuminance (UDI). In chapter 5, it was presented the criteria applied to the study model and on each of the variants of the analysis. Moreover, the information of the climate records used for the simulations - carried out in the Daysim program managed by Radiance – are detailed. These simulations allowed the observation of the daylight performance and the accuracy of each of the results to confirm the availability of natural light through a matrix. In a later stage, the results were discussed comparing the collected data in each of the methods of simulation used. Finally, conclusions and further discussion are presented. Overall, the four side atrium’s domain and the effect of the control of the cover’s enclosure. Specifically, the measurements of the daylight under summer’s clear, sunny sky allowing clarifying the use of the simulation tool and the method based on the local climate. This method allows defining new and future lines of work deepening on the dynamic of the light in contrast with the monitoring of the cases.

Expansión y transformación del territorio : la ineficiencia de los fraccionamientos urbanizados : zona conurbada de Veracruz, México

La expansión de la ciudad y zona conurbada de Veracruz, se encuentra en una dinámica en donde convergen el medio artificial construido por el hombre y que ha generado una ciudad fragmentada; el medio natural, en el que se encuentran importantes componentes ecosistémicos de la zona costera; las políticas y estrategias que establecen los cinco Programas de ordenamiento urbano vigentes, sujetos al patrón de acumulación de capital, favoreciendo los intereses de la iniciativa privada. Bajo este panorama encontramos un territorio complejo que se encuentra cada vez más vulnerado y en riesgo de que los sistemas humano y natural colapsen. Lo anterior se evidencia en los nuevos desarrollos urbanizados, a partir del estudio de la problemática que presentan los fraccionamientos habitacionales, donde cada vez son más vulnerables, lo que constata su ineficiencia dentro del sistema urbano. ABSTRACT The expansion of the city and metropolitan area of Veracruz, is in a dynamic where converge the artificial environment built by the man and that has generated a fragmented city; natural environment, in which there are important ecosystem components of the coastal zone; policies and strategies that establish the five existing urban planning programs, subject to the pattern of accumulation of capital, favoring the private enterprises interests. Under this scenario is found a complex area that is more vulnerable every time and at risk of human and natural systems collapse. The above mentioned is evident in the new urbanized development, from studies of the problem posed by housing developments, finding that more and more vulnerable, which finds its inefficiency within the urban system.

Respiratory microbiota resistance and resilience to pulmonary exacerbation and subsequent antimicrobial intervention

This study was supported by the UK Natural Environment Research Council (NE/H019456/1) to CJvdG, by the Wellcome Trust (WT 098051) to AWW and JP for sequencing costs, and by The Anna Trust (KB2008) to KDB. AWW and The Rowett Institute of Nutrition and Health, University of Aberdeen, receive core funding support from the Scottish Government Rural and Environmental Science and Analysis Service (RESAS). We thank Paul Scott, Richard Rance and the Wellcome Trust Sanger Institute’s sequencing team for generating 16S rRNA gene sequence data.

The effect of flow speed and food size on the capture efficiency and feeding behaviour of the cold-water coral Lophelia pertusa

Acknowledgements The authors acknowledge L. Wicks and B. de Francisco for helping in coral sampling and coral care in the aquaria facilities at SAMS. Thanks to C. Campbell and the CCAP for kind support and help. Scientific party and crew on board the RVs Calanus and Seol Mara, as well as on board the RRS James Cook during the Changing Oceans cruise (JC_073) are greatly acknowledged. Thanks to colleagues at SAMS for their support during our stay at SAMS. We are in debt with A. Olariaga for his help modifying the cylindrical experimental chambers used in the experiments, and C.C. Suckling for assistance with the flume experiment. Many thanks go to G. Kazadinis for preparing the POM used in the feeding experiments. We also thank two anonymous reviewers and the editor for their constructive comments, which contribute to improve the manuscript. This work has been supported by the European Commission through two ASSEMBLE projects (grant agreement no. 227799) conducted in 2010 and 2011 at SAMS, as well as by the UK Ocean Acidification Research Programme's Benthic Consortium project (awards NE/H01747X/1 and NE/H017305/1) funded by NERC. [SS]

Increasing the quality of seismic interpretation

Euan Macrae was funded by a NERC Open CASE PhD award (NE/F013728/1) with Midland Valley Exploration Ltd. as the industry partner. We thank the 763 geoscientists for their participation, and in particular, the reference experts who gave their time freely to the project. Marian Scott (University of Glasgow, UK) is thanked for assisting with the statistical analysis. Four reviewers are thanked for their constructive comments which improved the manuscript.

Low-temperature concentration of tellurium and gold in continental red bed successions

Acknowledgements This research was supported by NERC grants (NE/L001764/1, NE/M010953/1). We are grateful to J. Still and A. Sandison for technical support and to the gypsum mines and C. Brolley for access and sampling. Critical comments from Cristiana Ciobanu, Eric Gloaguen and Georges Calas are gratefully acknowledged. The authors have no conflicts of interest to declare

Resolving taxonomic uncertainty in vulnerable elasmobranchs : are the Madeira skate (Raja maderensis) and the thornback ray (Raja clavata) distinct species?

We are grateful to all those who helped with sample collection. This includes the MEDITS survey programme (IEO Mallorca) for Mediterranean samples. Portugal mainland samples were collected under the EU Data Collection Framework (DCF, PNAB). Azores specimens from the Department of Oceanography and Fisheries (DOP) of the University of the Azores (UAc) were collected under the project DEMERSAIS “Monitorização das espécies demersais dos Açores” financed by the Azorean government, and the project DEECON “Unravelling population connectivity for sustainable fisheries in the Deep Sea” project approved by the European Science Foundation (ESF) under the EUROCORES programme (proposal No 06-EuroDEEP-FP-008 & SFRH-EuroDEEP/0002/2007). This study was funded by the UK Natural Environment Research Council (NERC) Oceans 2025 Strategic Research Programme Theme 6 (Science for Sustainable Marine Resources). REB was supported by the Fisheries Society of the British Isles (FSBI), BSP was funded by the Fundação para a Ciência e a Tecnologia, SFRH/BPD/72351/2010 and JL was supported by The Alasdair Downes Marine Conservation Fund.

Limits to sustained energy intake XXIV : impact of suckling behaviour on the body temperatures of lactating female mice

We would like to thank the animal house staff and all members of the Energetics group for their invaluable help at various stages throughout the project. This work was supported by Natural Environment Research Council grant (NERC, NE/C004159/1). YG was supported by a scholarship from the rotary foundation. LV was supported by a Rubicon grant from the Netherlands Scientific Organisation (NWO).

Basement structure of the Hontomín CO2 storage site (Spain) determined by integration of microgravity and 3D seismic data

We dedicate this paper to the memory of Prof. Andres Perez Estaún, who was a great and committed scientist, wonderful colleague and even better friend. The datasets in this work have been funded by Fundación Ciudad de la Energía (Spanish Government, www.ciuden.es) and by the European Union through the “European Energy Programme 15 for Recovery” and the Compostilla OXYCFB300 project. Dr. Juan Alcalde is currently funded by NERC grant NE/M007251/1. Simon Campbell and Samuel Cheyney are acknowledged for thoughtful comments on gravity inversion

A trait-based approach for predicting species responses to environmental change from sparse data : how well might terrestrial mammals track climate change?

Funded by COST (European Cooperation in Science and Technology) CEH projects. Grant Numbers: NEC05264, NEC05100 Natural Environment Research Council UK. Grant Number: NE/J008001/1 © 2016 The Authors. Global Change Biology Published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

Water for small-scale biogas digesters in sub-Saharan Africa

Funded by UK Natural Environment Research Council ESPA project. Grant Number: NE/K010441/1 Afri-Flame

Identifying potential mechanisms enabling acidophily in the ammonia-oxidizing archaeon "Candidatus Nitrosotalea devanaterra"

FUNDING INFORMATION This work, including the efforts of Luis Sayavedra-Soto, was funded by National Science Foundation (NSF) (0541797). This work, including the efforts of Laura E. Lehtovirta-Morley, James I. Prosser, and Graeme W. Nicol, was funded by Natural Environment Research Council (NERC) (NE/I027835/1). Graeme W. Nicol is also supported by the AXA Research Fund.

Quantifying pursuit-diving seabirds’ associations with fine-scale physical features in tidal streamenvironments

Acknowledgements James J. Waggitt was funded by a NERC Case studentship supported by OpenHydro Ltd and Marine Scotland Science (NE/J500148/1). Vessel-based transects were funded by a NERC (NE/J004340/1) and a Scottish National Heritage (SNH) grant. FVCOM modelling was funded by a NERC grant (NE/J004316/1). Marine Scotland Science provided time on the FRV Alba-na-Mara as part as the Marine Collaboration Research Forum (MarCRF). The bathymetry data used in hydrodynamic models (HI 1122 Sanday Sound to Westray Firth) was collected by the Maritime & Coastguard Agency (MCA) as part of the UK Civil Hydrography Programme. We wish to thank Christina Bristow, Matthew Finn and Jennifer Norris at the European Marine Energy Centre (EMEC); Marianna Chimienti, Ciaran Cronin, Tim Sykes and Stuart Thomas for performing vessel-based transects; Marine Scotland Science staff Eric Armstrong, Ian Davies, Mike Robertson, Robert Watret and Michael Stewart for their assistance; Shaun Fraser, Pauline Goulet, Alex Robbins, Helen Wade and Jared Wilson for invaluable discussions; Thomas Cornulier, Alex Douglas, James Grecian and Samantha Patrick for their help with statistical analysis; and Gavin Siriwardena, Leigh Torres, Mark Whittingham and Russell Wynn for their constructive comments on earlier versions of this manuscript.

Food availability and predation risk, rather than intrinsic attributes are the main factors shaping the reproductive decisions of a long-lived predator

Funded by Natural Research Limited Natural Environment Research Council studentship. Grant Numbers: NE/J500148/1, NE/F021402/1