Simple sequence repeats reveal uneven distribution of genetic diversity in chloroplast genomes of Brassica oleracea L. and (n=9) wild relatives

Diversity in the chloroplast genome of 171 accessions representing the Brassica 'C' (n = 9) genome, including domesticated and wild B. oleracea and nine inter-fertile related wild species, was investigated using six chloroplast SSR (microsatellite) markers. The lack of diversity detected among 105 cultivated and wild accessions of B. oleracea contrasted starkly with that found within its wild relatives. The vast majority of B. oleracea accessions shared a single haplotype, whereas as many as six haplotypes were detected in two wild species, B. villosa Biv. and B. cretica Lam.. The SSRs proved to be highly polymorphic across haplotypes, with calculated genetic diversity values (H) of 0.23-0.87. In total, 23 different haplotypes were detected in C genome species, with an additional five haplotypes detected in B. rapa L. (A genome n = 10) and another in B. nigra L. (B genome, n = 8). The low chloroplast diversity of B. oleracea is not suggestive of multiple domestication events. The predominant B. oleracea haplotype was also common in B. incana Ten. and present in low frequencies in B. villosa, B. macrocarpa Guss, B. rupestris Raf. and B. cretica. The chloroplast SSRs reveal a wealth of diversity within wild Brassica species that will facilitate further evolutionary and phylogeographic studies of this important crop genus.

Stress generation in the tension wood of poplar is based on the lateral swelling power of the G-layer

The mechanism of active stress generation in tension wood is still not fully understood. To characterize the functional interdependency between the G-layer and the secondary cell wall, nanostructural characterization and mechanical tests were performed on native tension wood tissues of poplar (Populus nigra x Populus deltoids) and on tissues in which the G-layer was removed by an enzymatic treatment. In addition to the well-known axial orientation of the cellulose fibrils in the G-layer, it was shown that the microfibril angle of the S2-layer was very large (about 36 degrees). The removal of the G-layer resulted in an axial extension and a tangential contraction of the tissues. The tensile stress-strain curves of native tension wood slices showed a jagged appearance after yield that could not be seen in the enzyme-treated samples. The behaviour of the native tissue was modelled by assuming that cells deform elastically up to a critical strain at which the G-layer slips, causing a drop in stress. The results suggest that tensile stresses in poplar are generated in the living plant by a lateral swelling of the G-layer which forces the surrounding secondary cell wall to contract in the axial direction.

The inclusion of forage mixtures in the diet of growing dairy heifers: impacts on digestion, energy utilisation, and methane emissions

Intensive farming focusing on monoculture grass species to maximise forage production has led to a reduction in the extent and diversity of species-rich grasslands. However, plant communities with higher species number (richness) are a potential strategy for more sustainable production and mitigation of greenhouse gas (GHG) emissions. Research has indicated the need to understand opportunities that forage mixtures can offer sustainable ruminant production systems. The objective of the two experiments reported here were to evaluate multiple species forage mixtures in comparison to ryegrass-dominant pasture, when conserved or grazed, on digestion, energy utilisation, N excretion, and methane emissions by growing 10–15 month old heifers. Experiment 1 was a 4 × 4 Latin square design with five week periods. Four forage treatments of: (1) ryegrass (control); permanent pasture with perennial ryegrass (Lolium perenne); (2) clover; a ryegrass:red clover (Trifolium pratense) mixture; (3) trefoil; a ryegrass:birdsfoot trefoil (Lotus corniculatus) mixture; and (4) flowers; a ryegrass:wild flower mixture of predominately sorrel (Rumex acetosa), ox-eye daisy (Leucanthemum vulgare), yarrow (Achillea millefolium), knapweed (Centaurea nigra) and ribwort plantain (Plantago lanceolata), were fed as haylages to four dairy heifers. Measurements included digestibility, N excretion, and energy utilisation (including methane emissions measured in respiration chambers). Experiment 2 used 12 different dairy heifers grazing three of the same forage treatments used to make haylage in experiment 1 (ryegrass, clover and flowers) and methane emissions were estimated using the sulphur hexafluoride (SF6) tracer technique. Distribution of ryegrass to other species (dry matter (DM) basis) was approximately 70:30 (clover), 80:20 (trefoil), and 40:60 (flowers) for experiment 1. During the first and second grazing rotations (respectively) in experiment 2, perennial ryegrass accounted for 95 and 98% of DM in ryegrass, and 84 and 52% of DM in clover, with red clover accounting for almost all of the remainder. In the flowers mixture, perennial ryegrass was 52% of the DM in the first grazing rotation and only 30% in the second, with a variety of other flower species occupying the remainder. Across both experiments, compared to the forage mixtures (clover, trefoil and flowers), ryegrass had a higher crude protein (CP) content (P < 0.001, 187 vs. 115 g kg −1 DM) and DM intake (P < 0.05, 9.0 vs. 8.1 kg day −1). Heifers in experiment 1 fed ryegrass, compared to the forage mixtures, had greater total tract digestibility (g kg −1) of DM (DMD; P < 0.008, 713 vs. 641) and CP (CPD, P < 0.001, 699 vs. 475), and used more intake energy (%) for body tissue deposition (P < 0.05, 2.6 vs. −4.9). For both experiments, heifers fed flowers differed the most compared to the ryegrass control for a number of measurements. Compared to ryegrass, flowers had 40% lower CP content (P < 0.001, 113 vs. 187 g kg −1), 18% lower DMD (P < 0.01, 585 vs. 713 g kg −1), 42% lower CPD (P < 0.001, 407 vs. 699 g kg −1), and 10% lower methane yield (P < 0.05, 22.6 vs. 25.1 g kg −1 DM intake). This study has shown inclusion of flowers in forage mixtures resulted in a lower CP concentration, digestibility and intake. These differences were due in part to sward management and maturity at harvest. Further research is needed to determine how best to exploit the potential environmental benefits of forage mixtures in sustainable ruminant production systems.

Effect of air-drying pre-treatment on the characterization of forest soil carbon pools

Archived soils could represent a valuable resource for the spatio-temporal inventory of soil carbon stability. However, archived soils are usually air-dried before storage and the impact of a drying pretreatment on physically and chemically-defined C fractions has not yet been fully assessed. Through the comparison of field-moist and corresponding air-dried (at 25oC for 2 weeks) forest soil samples, we examined the effect of air-drying on: a) the quantity and the quality of cold- (CWEC) and hot-water (HWEC) extractable C and b) the concentration of C in physically isolated fractions (free- and intra-aggregate light and organo-mineral). Soil samples were collected from the organic (O) and mineral (A and B) horizons of three different forest soils from southeastern England: (i) Cambisol under Pine (Pinus nigra); (ii) Cambisol under Beech (Fagus sylvatica) and (iii) Gleysol under oak (Quercus robur). CWEC concentrations for dry samples were up to 2 times greater than for corresponding field moist samples and had significantly (p < 0.001) higher phenolic content. However, the effect of drying pretreatment on HWEC, its phenolic content was not significant (p > 0.05) for most samples. Dried soils had significantly (p < 0.001) higher concentrations of free light-C while having lower concentrations of intra-aggregate-C when compared to moist samples (p < 0.001). However, fine silt and clay fractions were not significantly affected by the drying pretreatment (p=0.789). Therefore, based on the results obtained from gleysol and cambisol forest soils studied here, C contents in hot-water extractions and fine particle size physical fractions (< 25µm) seem to be robust measurements for evaluating C fractions in dried stored forest soils. Further soil types should be tested to evaluate the wider generality of these findings.

Phylogeny of snake trypanosomes inferred by SSU rDNA sequences, their possible transmission by phlebotomines, and taxonomic appraisal by molecular, cross-infection and morphological analysis

Blood examination by microhaematocrit and haemoculture of 459 snakes belonging to 37 species revealed 24% trypanosome prevalence in species of Viperidae (Crotalus durissus and Bothrops jararaca) and Colubridae (Pseudoboa nigra). Trypanosome cultures from C. durissus and P. nigra were behaviourally and morphologically indistinguishable. In addition, the growth and morphological features of a trypanosome from the sand fly Viannaniyia tuberculata were similar to those of snake isolates. Cross-infection experiments revealed a lack of host restriction, as snakes of 3 species were infected with the trypanosome from C. durissus. Phylogeny based on ribosomal sequences revealed that snake trypanosomes clustered together with the sand fly trypanosome, forming a new phylogenetic lineage within Trypanosoma closest to a clade of lizard trypanosomes transmitted by sand flies dagger. The clade of trypanosomes from snakes and lizards suggests an association between the evolutionary histories of these trypanosomes and their squamate hosts. Moreover, data strongly indicated that these trypanosomes are transmitted by sand flies. The flaws of the current taxonomy of snake trypanosomes are discussed, and the need for molecular parameters to be adopted is emphasized. To our knowledge, this is the first molecular phylogenetic study of snake trypanosomes.

Optimization of a method for determination of phenolic acids in exotic fruits by capillary electrophoresis

In this work, the separation of nine phenolic acids (benzoic, caffeic, chlorogenic, p-coumaric, ferulic, gallic, protocatechuic, syringic, and vanillic acid) was approached by a 32 factorial design in electrolytes consisting of sodium tetraborate buffer(STB) in the concentration range of 10-50 mmol L(-1) and methanol in the volume percentage of 5-20%. Derringer`s desirability functions combined globally were tested as response functions. An optimal electrolyte composed by 50 mmol L(-1) tetraborate buffer at pH 9.2, and 7.5% (v/v) methanol allowed baseline resolution of all phenolic acids under investigation in less than 15 min. In order to promote sample clean up, to preconcentrate the phenolic fraction and to release esterified phenolic acids from the fruit matrix, elaborate liquid-liquid extraction procedures followed by alkaline hydrolysis were performed. The proposed methodology was fully validated (linearity from 10.0 to 100 mu g mL(-1), R(2) > 0.999: LOD and LOQ from 1.32 to 3.80 mu g mL(-1) and from 4.01 to 11.5 mu g mL(-1), respectively; intra-day precision better than 2.8% CV for migration time and 5.4% CV for peak area; inter-day precision better than 4.8% CV for migration time and 4.8-11% CV for peak area: recoveries from 81% to 115%) and applied successfully to the evaluation of phenolic contents of abiu-roxo (Chrysophyllum caimito), wild mulberry growing in Brazil (Morus nigra L.) and tree tomato (Cyphomandra betacea). Values in the range of 1.50-47.3 mu g g(-1) were found, with smaller amounts occurring as free phenolic acids. (C) 2009 Elsevier B.V. All rights reserved.

Estresse neonatal, expressão do medo e sistema dopaminérgico em ratos

A estimulação neonatal tem sido utilizada como modelo experimental para examinar os mecanismos pelos quais variações precoces do ambiente do animal afetam o desenvolvimento de sistemas neurais, dando origem a alterações comportamentais e neuroendócrinas duradouras. Buscou-se estudar os efeitos do estresse neonatal sobre duas abordagens: comportamental e imunoistoquímica. Na primeira, foram avaliados em ratos adultos (90-110 dias) dois paradigmas de medo: inato (campo aberto, N=48) e aprendido, (condicionamento clássico N=48); enquanto na segunda abordagem realizou-se a técnica imunoistoquímica (N=15) na substância nigra compacta (SNCo) e área tegmental ventral (VTA) para detecção da enzima precursora da dopamina, a tirosina hidroxilase (TH). Foram utilizados ratos da variedade Wistar, que do 1º ao 10º dia de vida foram submetidos a 3 tipos de intervenção: manipulação (retirados do ninho por 3min sendo tocados gentilmente por 1 min); separação (retirados do ninho por 3h, e mantidos a temperatura de 33ºC); e grupo controle (sem intervenções do experimentador ou do tratador). O condicionamento clássico (treino) foi constituído por 10 pareamentos de 1 estímulo incondicionado (EI, choque elétrico –0,8mA) com 2 estímulos condicionados ou neutros (EC, som e luz) em 2 sessões de 5 pareamentos cada. A duração de cada emissão do EC foi de 5s sendo no último segundo associada ao EI. O teste foi realizado 24h após o treino, e consistiu de emissões de EC com mesma duração e intervalo por um período total de 30 min. No experimento 2, foi utilizado um campo aberto de 1m2 no qual os ratos permaneceram por 5 min. Em ambos experimentos os comportamentos eram registrados em vídeo e analisados através do programa Noldus. Os resultados (X±EPM) foram analisados por uma ANOVA, post-hoc Newman Keuls ou Kruskal Wallis post-hoc Dunn (p<0,05). Nos experimentos comportamentais foram observados os seguintes resultados: no medo aprendido houve diminuição da duração (s) do comportamento de imobilização (491±54); da duração de rearing (58±13) e da latência para extinção do condicionamento do grupo manipulado (591±434) comparado ao controle (718±73; 22±6; 1020±843 respectivamente) e no campo aberto houve aumento da duração e freqüência da locomoção e rearing (97.6±8; 4.3±1 e 64.3±5; 31±2), diminuição da duração de autolimpeza (4.2±1) e aumento da freqüência de entradas no centro do campo aberto (4.3±0,8) no grupo manipulado comparado ao controle (69±7; 30±3 e 48±6; 21.5±2; 19±5; 2.2±0.6, respectivamente). Na análise Imunoistoquímica não foram detectadas diferenças significativas entre os grupos quanto imunomarcação de TH nas áreas estudadas. Foi confirmada a diminuição da inibição comportamental no campo aberto como conseqüência da manipulação. A manipulação neonatal também reduziu as respostas do medo condicionado, ratos manipulados no período neonatal expressam, quando adultos, menor expressão de medo aprendido e tem a extinção da aprendizagem aversiva mais acelerada. Curiosamente não foram observados efeitos da separação materna sobre as repostas de medo inato ou aprendido. Embora a dopamina do sistema mesocorticolímbico module as respostas comportamentais alteradas, nenhum dos modelos de intervenção estudados afetaram a intensidade de marcação deste neurotransmissor.

Cladophialophora saturnica sp nov., a new opportunistic species of Chaetothyriales revealed using molecular data

While many members of the black yeasts genus Cladophialophora have been reported to cause diseases in humans, understanding of their natural niche is frequently lacking. Some species can be recovered from the natural environment by means of selective isolation techniques. The present study focuses on a Cladophialophora strain that caused an interdigital tinea nigra-like lesion in a HIV-positive Brazilian child. The fungal infection was successfully treated with oxiconazole. Similar strains had been recovered from the environment in Brazil, Uruguay and the Netherlands. The strains were characterized by sequencing the Internal Transcribed Spacer (ITS) regions and the small subunit (SSU) of the nuclear ribosomal RNA gene, as well as the elongation factor 1-alpha (EF1) gene. Since no match with any known species was found, it is described as the new species, Cladophialophora saturnica.

Differentiation of floral color and odor in two fly pollinated species of Metrodorea (Rutaceae) from Brazil

We investigated if differences in morphological characters in two species of Metrodorea (Rutaceae) from Brazilian semideciduous forests correspond to some pollination divergence. M. nigra and M. stipularis are sympatric species, display a similar floral morphology, are protandrous, self-incompatible, their flower periods overlap, and both are pollinated by flies. M. nigra main pollinators are Pseudoptiloleps nigripoda (Muscidae) and Fannia sp. (Fanniidae); M. stipularis major pollinators are Phaenicia eximia (Calliphoridae), Palpada sp. and Ornidia obesa (Syrphidae). The distinct floral odor (disagreeable in M. nigra and sweet in M. stipularis) and color (brownish violet vs. pale yellow) determine the differences on type and number of floral visitors observed. Several species from semideciduous forests initially considered to be pollinated by diverse insects, present flies as main pollinators, stressing the importance of fly pollination in such habitats.

Growth and carbon isotopes of Mediterranean trees reveal contrasting responses to increased carbon dioxide and drought

Forest dynamics will depend upon the physiological performance of individual tree species under more stressful conditions caused by climate change. In order to compare the idiosyncratic responses of Mediterranean tree species (Quercus faginea, Pinus nigra, Juniperus thurifera) coexisting in forests of central Spain, we evaluated the temporal changes in secondary growth (basal area increment; BAI) and intrinsic water-use efficiency (iWUE) during the last four decades, determined how coexisting species are responding to increases in atmospheric CO2 concentrations (Ca) and drought stress, and assessed the relationship among iWUE and growth during climatically contrasting years. All species increased their iWUE (ca. +15 to +21 %) between the 1970s and the 2000s. This increase was positively related to Ca for J. thurifera and to higher Ca and drought for Q. faginea and P. nigra. During climatically favourable years the study species either increased or maintained their growth at rising iWUE, suggesting a higher CO2 uptake. However, during unfavourable climatic years Q. faginea and especially P. nigra showed sharp declines in growth at enhanced iWUE, likely caused by a reduced stomatal conductance to save water under stressful dry conditions. In contrast, J. thurifera showed enhanced growth also during unfavourable years at increased iWUE, denoting a beneficial effect of Ca even under climatically harsh conditions. Our results reveal significant inter-specific differences in growth driven by alternative physiological responses to increasing drought stress. Thus, forest composition in the Mediterranean region might be altered due to contrasting capacities of coexisting tree species to withstand increasingly stressful conditions. © 2013 Springer-Verlag Berlin Heidelberg.

Estrutura de uma comunidade arbórea de floresta estacional semidecídua não pertubada no noroeste paulista em relação à outra comunidade com indicadores de perturbação

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Baetidae (Insecta, Ephemeroptera) em córregos do cerrado matogrossense sob diferentes níveis de preservação ambiental

O efeito dos diferentes níveis de preservação ambiental de córregos de 1ª a 4ª ordens sobre a riqueza, abundância, similaridade na composição de Baetidae (Ephemeroptera) e o potencial das espécies como bioindicadoras foram investigados em uma região de cerrado matogrossense. Um total de vinte espécies/morfoespécies foi catalogado dentre as 1752 ninfas amostradas, sendo reportado dois novos registros de espécies para o país. Os valores do Índice de Integridade de Hábitat (HII) obtidos foram categorizados para ambientes degradados, alterados e conservados. A riqueza de espécies foi diferente entre os locais, sendo maior em ambientes alterados. A abundância foi maior entre ambientes conservados e alterados, sendo significantemente diferente dos locais degradados. A análise NMDS indicou que locais conservados e alterados apresentam similaridade de composição de espécies, diferindo dos locais degradados. Quatro espécies demonstraram relação positiva com o aumento dos valores do HII. Baetidae apresentou espécies indicadoras de ambientes com diferentes níveis de preservação, sendo Zelusia principalis Lugo-Ortiz & McCafferty, 1998 e Baetodes sp. indicadoras de ambientes conservados e Aturbina nigra Salles, Boldrini & Shimano, 2011, Callibaetis sp. 2, Camelobaetidius aff. janae Dominique & Thomas, 2000, Paracloeodes binodulus Lugo-Ortiz & McCafferty, 1996, Waltzoyphius roberti Thomas & Peru, 2002 como indicadoras de ambientes alterados. O conhecimento da ecologia das espécies avança no sentido de fornecer subsídios ao biomonitoramento da bacia e uso de espécies indicadoras.

Evaluation of solvent effect on the extraction of phenolic compounds and antioxidant capacities from the berries: application of principal component analysis

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Classificação do grupo sucessional de espécies nativas por análise do processo de estiolamento de plântulas

As plantas apresentam moléculas que detectam a luz, entre elas estão os fitocromos que detectam mudanças na qualidade da luz nas regiões de vermelho (V) e vermelho-extremo (VE). O fitocromo age no crescimento das plantas possibilitando-as perceber o sombreamento por outras plantas, o que pode ocasionar no processo de estiolamento, ou seja, alongamento do caule. Assim, conforme aumenta o sombreamento, a razão V:VE diminui. Nas plantas de sol, quanto maior a proporção de VE, maior a taxa de estiolamento, enquanto que as plantas de sombra mostram pouca ou nenhuma redução na taxa de alongamento dos caules. Na sucessão florestal as plantas podem ser classificadas como pioneiras, sendo aquelas dependentes de luz e intolerantes à sombra, e as de transição ou clímax, que são tolerantes à sombra. Assim, este trabalho teve o intuito de analisar o processo de estiolamento de plântulas de espécies arbóreas nativas selecionadas, mantidas em condições de luz diferentes e correlacionar com a classe seral correspondente citada na literatura. As seguintes espécies foram analisadas: Bixa orellana, Caesalpinia peltophoroides, Dalbergia nigra, Erythrina speciosa, Eugenia uniflora, Hevea brasiliensis, Hymenaea courbaril, Licania tomentosa, Pachira aquatica, Piptadenia gonoacantha, Psidium guajava, Schizolobium parahyba. Todos os experimentos foram desenvolvidos no jardim experimental da UNESP de Rio Claro. As espécies foram expostas a seis condições luminosas diferentes, com razão V:VE de: 0,1; 0,19; 0,21; 0,35; 1,15 e 1,17. E radiação solar incidente de: 3,16UM; 44,78UM; 27,7UM; 73,54UM; 1987,00UM; 1453,00UM. Foram tiradas medidas do comprimento dos hipocótilos e epicótilos. Posteriormente foram realizadas análises estatísticas com nível de significância de 5%. As espécies consideradas pioneiras foram D. nigra e S. parahyba. E as espécies classificadas como não pioneiras foram:... (Resumo completo, clicar acesso eletrônico abaixo)

Microsatellite in Aeschynomene falcata (Leguminosae): diversity, cross-amplification, and chromosome localization

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)