IDELab MapstractionInteractive: API Universal y Políglota

Continuamente aparecen nuevas plataformas de gestión de cartografía web, con el inconveniente de que cada una de ellas utiliza un API propia. Dada la gran heterogeneidad de APIs de Mapas existente, sería conveniente disponer de una librería de mapas capaz de abstraer al desarrollador de las pequeñas diferencias entre ellas. Este es el objetivo de la librería Javascript de código abierto Mapstraction. Este tipo de API recibe el nombre de «API Universal y Políglota». Gracias a Mapstraction se pueden desarrollar aplicaciones en las que el usuario puede visualizar la información cartográfica con varios proveedores, pero presenta el inconveniente de no proporcionar mecanismos de creación y/o edición. En este documento se recogen las principales novedades que presenta la librería IDELab MapstractionInteractive, una extensión de Mapstraction que ofrece nueva funcionalidad para solventar las carencias de ésta. Las nuevas funcionalidades implementadas para los proveedores que se incluyen dentro de la librería brindan al usuario la posibilidad de poder editar y crear geometrías sobre el mapa (puntos, líneas y polígonos). Por otra parte, también se implementan dentro de la librería nuevos eventos para los mapas, de forma que el programador puede tener un mayor control de lo que el usuario hace sobre éstos

OpenSearch-geo: the simple standard for geographic web search engines

When publishing information on the web, one expects it to reach all the people that could be interested in. This is mainly achieved with general purpose indexing and search engines like Google which is the most used today. In the particular case of geographic information (GI) domain, exposing content to mainstream search engines is a complex task that needs specific actions. In many occasions it is convenient to provide a web site with a specially tailored search engine. Such is the case for on-line dictionaries (wikipedia, wordreference), stores (amazon, ebay), and generally all those holding thematic databases. Due to proliferation of these engines, A9.com proposed a standard interface called OpenSearch, used by modern web browsers to manage custom search engines. Geographic information can also benefit from the use of specific search engines. We can distinguish between two main approaches in GI retrieval information efforts: Classical OGC standardization on one hand (CSW, WFS filters), which are very complex for the mainstream user, and on the other hand the neogeographer’s approach, usually in the form of specific APIs lacking a common query interface and standard geographic formats. A draft ‘geo’ extension for OpenSearch has been proposed. It adds geographic filtering for queries and recommends a set of simple standard response geographic formats, such as KML, Atom and GeoRSS. This proposal enables standardization while keeping simplicity, thus covering a wide range of use cases, in both OGC and the neogeography paradigms. In this article we will analyze the OpenSearch geo extension in detail and its use cases, demonstrating its applicability to both the SDI and the geoweb. Open source implementations will be presented as well

Inference on microsatellite mutation processes in the invasive mite, Varroa destructor, using reversible jump Markov chain Monte Carlo

Varroa destructor is a parasitic mite of the Eastern honeybee Apis cerana. Fifty years ago, two distinct evolutionary lineages (Korean and Japanese) invaded the Western honeybee Apis mellifera. This haplo-diploid parasite species reproduces mainly through brother sister matings, a system which largely favors the fixation of new mutations. In a worldwide sample of 225 individuals from 21 locations collected on Western honeybees and analyzed at 19 microsatellite loci, a series of de novo mutations was observed. Using historical data concerning the invasion, this original biological system has been exploited to compare three mutation models with allele size constraints for microsatellite markers: stepwise (SMM) and generalized (GSM) mutation models, and a model with mutation rate increasing exponentially with microsatellite length (ESM). Posterior probabilities of the three models have been estimated for each locus individually using reversible jump Markov Chain Monte Carlo. The relative support of each model varies widely among loci, but the GSM is the only model that always receives at least 9% support, whatever the locus. The analysis also provides robust estimates of mutation parameters for each locus and of the divergence time of the two invasive lineages (67,000 generations with a 90% credibility interval of 35,000-174,000). With an average of 10 generations per year, this divergence time fits with the last post-glacial Korea Japan land separation. (c) 2005 Elsevier Inc. All rights reserved.

Polymer-mediated disruption of drug crystallinity

Ibuprofen (IB), a BCS Class II compound, is a highly crystalline substance with poor solubility properties. Here we report on the disruption of this crystalline structure upon intimate contact with the polymeric carrier cross-linked polyvinylpyrrolidone (PVP-CL) facilitated by low energy simple mixing. Whilst strong molecular interactions between APIs and carriers within delivery systems would be expected on melting or through solvent depositions, this is not the case with less energetic mixing. Simple mixing of the two compounds resulted in a significant decrease in the differential scanning calorimetry (DSC) melting enthalpy for IB, indicating that approximately 30% of the crystalline content was disordered. This structural change was confirmed by broadening and intensity diminution of characteristic IB X-ray powder diffractometry (PXRD) peaks. Unexpectedly, the crystalline content of the drug continued to decrease upon storage under ambient conditions. The molecular environment of the mixture was further investigated using Fourier transform infrared (FT-IR) and Fourier transform Raman (FT-Raman) spectroscopy. These data suggest that the primary interaction between these components of the physical mix is hydrogen bonding, with a secondary mechanism involving electrostatic/hydrophobic interactions through the IB benzene ring. Such interactions and subsequent loss of crystallinity could confer a dissolution rate advantage for IB. (C) 2006 Elsevier B.V. All rights reserved.

A novel method for assessing risks to pollinators from plant protection products using honeybees as a model species

Pollination is one of the most important ecosystem services in agroecosystems and supports food production. Pollinators are potentially at risk being exposed to pesticides and the main route of exposure is direct contact, in some cases ingestion, of contaminated materials such as pollen, nectar, flowers and foliage. To date there are no suitable methods for predicting pesticide exposure for pollinators, therefore official procedures to assess pesticide risk are based on a Hazard Quotient. Here we develop a procedure to assess exposure and risk for pollinators based on the foraging behaviour of honeybees (Apis mellifera) and using this species as indicator representative of pollinating insects. The method was applied in 13 European field sites with different climatic, landscape and land use characteristics. The level of risk during the crop growing season was evaluated as a function of the active ingredients used and application regime. Risk levels were primarily determined by the agronomic practices employed (i.e. crop type, pest control method, pesticide use), and there was a clear temporal partitioning of risks through time. Generally the risk was higher in sites cultivated with permanent crops, such as vineyard and olive, than in annual crops, such as cereals and oil seed rape. The greatest level of risk is generally found at the beginning of the growing season for annual crops and later in June–July for permanent crops.

Pollination services in the UK: how important are honeybees?

Pollination services are known to provide substantial benefits to human populations and agriculture in particular. Although many species are known to provide pollination services, honeybees (Apis mellifera) are often assumed to provide the majority of these services to agriculture. Using data from a range of secondary sources, this study assesses the importance of insect pollinated crops at regional and national scales and investigates the capacity of honeybees to provide optimal pollination services to UK agriculture. The findings indicate that insect pollinated crops have become increasingly important in UK crop agriculture and, as of 2007, accounted for 20% of UK cropland and 19% of total farmgate crop value. Analysis of honeybee hive numbers indicates that current UK populations are only capable of supplying 34% of pollination service demands even under favourable assumptions, falling from 70% in 1984. In spite of this decline, insect pollinated crop yields have risen by an average of 54% since 1984, casting doubt on long held beliefs that honeybees provide the majority of pollination services. Future land use and crop production patterns may further increase the role of pollination services to UK agriculture, highlighting the importance of measures aimed at maintaining both wild and managed species.

Sublethal neonicotinoid insecticide exposure reduces solitary bee reproductive success

1. Pollinating insects provide crucial and economically important ecosystem services to crops and wild plants, but pollinators, particularly bees, are globally declining as a result of various driving factors, including the prevalent use of pesticides for crop protection. Sublethal pesticide exposure negatively impacts numerous pollinator lifehistory traits, but its influence on reproductive success remains largely unknown. Such information is pivotal, however, to our understanding of the long-term effects on population dynamics. 2 We investigated the influence of field-realistic trace residues of the routinely used neonicotinoid insecticides thiamethoxam and clothianidin in nectar substitutes on the entire life-time fitness performance of the red mason bee Osmia bicornis. 3 We show that chronic, dietary neonicotinoid exposure has severe detrimental effects on solitary bee reproductive output. Neonicotinoids did not affect adult bee mortality; however, monitoring of fully controlled experimental populations revealed that sublethal exposure resulted in almost 50% reduced total offspring production and a significantly male-biased offspring sex ratio. 4 Our data add to the accumulating evidence indicating that sublethal neonicotinoid effects on non-Apis pollinators are expressed most strongly in a rather complex, fitness-related context. Consequently, to fully mitigate long-term impacts on pollinator population dynamics, present pesticide risk assessments need to be expanded to include whole life-cycle fitness estimates, as demonstrated in the present study using O. bicornis as a model.

Superinfection exclusion and the long-term survival of honey bees in Varroa-infested colonies

Over the past 50 years, many millions of European honey bee (Apis mellifera) colonies have died as the ectoparasitic mite, Varroa destructor, has spread around the world. Subsequent studies have indicated that the mite's association with a group of RNA viral pathogens (Deformed Wing Virus, DWV) correlates with colony death. Here, we propose a phenomenon known as superinfection exclusion that provides an explanation of how certain A. mellifera populations have survived, despite Varroa infestation and high DWV loads. Next-generation sequencing has shown that a non-lethal DWV variant 'type B' has become established in these colonies and that the lethal 'type A' DWV variant fails to persist in the bee population. We propose that this novel stable host-pathogen relationship prevents the accumulation of lethal variants, suggesting that this interaction could be exploited for the development of an effective treatment that minimises colony losses in the future.The ISME Journal advance online publication, 27 October 2015; doi:10.1038/ismej.2015.186.

Descriptive Sensory Analysis and Acceptance of Stingless Bee Honey

Stingless bee honey samples were evaluated by sensory descriptive analysis using free choice profile methodology. Appearance, flavor, and aroma were described and the data were treated with Generalized Procrustes Analysis. Individual descriptive terms ranged from 8 to 20. Plotting the samples in a bidimensional plan indicated that appearance attributes (color and viscosity) and sweet, sour and acid flavor were strongly correlated with x axis (Dimension 1) while coconut, wood, acid, sour, and sweet flavor aroma attributes were correlated with y axis (Dimension 2). The affective test was also performed and with the exception of the Melipona scutellaris honey, all the other samples showed good acceptance. Honeys that were described as sweeter and less acid were preferred by nontrained assessors, indicating that the regular consumer recognizes honey produced by Apis mellifera bee as a standard.

A molecular phylogeny of the stingless bee genus Melipona (Hymenoptera: Apidae)

Stingless bees (Meliponini) constitute a diverse group of highly eusocial insects that occur throughout tropical regions around the world. The meliponine genus Melipona is restricted to the New World tropics and has over 50 described species. Melipona, like Apis, possesses the remarkable ability to use representational communication to indicate the location of foraging patches. Although Melipona has been the subject of numerous behavioral, ecological, and genetic studies, the evolutionary history of this genus remains largely unexplored. Here, we implement a multigene phylogenetic approach based on nuclear, mitochondrial, and ribosomal loci, coupled with molecular clock methods, to elucidate the phylogenetic relationships and antiquity of subgenera and species of Melipona. Our phylogenetic analysis resolves the relationship among subgenera and tends to agree with morphology-based classification hypotheses. Our molecular clock analysis indicates that the genus Melipona shared a most recent common ancestor at least similar to 14-17 million years (My) ago. These results provide the groundwork for future comparative analyses aimed at understanding the evolution of complex communication mechanisms in eusocial Apidae. (C) 2010 Elsevier Inc. All rights reserved.

Morphometrical, biochemical and molecular tools for assessing biodiversity. An example in Plebeia remota (Holmberg, 1903) (Apidae, Meliponini)

We see today many efforts to quantify biodiversity in different biomes. It is very important then to develop and to apply other methodologies that allow us to assess biodiversity. Here we present an example of application of three tools with this goal. We analyzed two populations of Plebeia remota from two distinct biomes that already showed several differences in morphology and behavior. Based on these differences, it has been suggested that the populations of Cunha and Prudentopolis do not represent a single species. In order to verify the existence or absence of gene flow between these two groups, we characterized the patterns of mtDNA through RFLP, the patterns of wing venation through geometric morphometry, and the cuticular hydrocarbons through gas chromatography-mass spectrometry. We used bees collected in these two locations and also from colonies which have being kept for around 9 years at Sao Paulo University. We found six different haplotypes in these specimens, of which three of them occurred exclusively in the population of Cunha and three only in the Prudentopolis population. The fact that the populations do not share haplotypes suggests no maternal gene flow between them. The two populations were differentiated by the pattern of the wing veins. They also had different mixtures of cuticle hydrocarbons. Furthermore it was shown that the colonies kept at the university did not hybridize. These two groups may constitute different species. We also show here the importance of using other methodologies than traditional taxonomy to assess and understand biodiversity, especially in bees.

A Harmonized Vocabulary For Water Quality

Interoperability of water quality data depends on the use of common models, schemas and vocabularies. However, terms are usually collected during different activities and projects in isolation of one another, resulting in vocabularies that have the same scope being represented with different terms, using different formats and formalisms, and published in various access methods. Significantly, most water quality vocabularies conflate multiple concepts in a single term, e.g. quantity kind, units of measure, substance or taxon, medium and procedure. This bundles information associated with separate elements from the OGC Observations and Measurements (O&M) model into a single slot. We have developed a water quality vocabulary, formalized using RDF, and published as Linked Data. The terms were extracted from existing water quality vocabularies. The observable property model is inspired by O&M but aligned with existing ontologies. The core is an OWL ontology that extends the QUDT ontology for Unit and QuantityKind definitions. We add classes to generalize the QuantityKind model, and properties for explicit description of the conflated concepts. The key elements are defined to be sub-classes or sub-properties of SKOS elements, which enables a SKOS view to be published through standard vocabulary APIs, alongside the full view. QUDT terms are re-used where possible, supplemented with additional Unit and QuantityKind entries required for water quality. Along with items from separate vocabularies developed for objects, media, and procedures, these are linked into definitions in the actual observable property vocabulary. Definitions of objects related to chemical substances are linked to items from the Chemical Entities of Biological Interest (ChEBI) ontology. Mappings to other vocabularies, such as DBPedia, are in separately maintained files. By formalizing the model for observable properties, and clearly labelling the separate concerns, water quality observations from different sources may be more easily merged and also transformed to O&M for cross-domain applications.

Ecologia da polinização de Passiflora suberosa Linnaeus (Passifloraceae)

Passiflora suberosa Linnaeus (Passifloraceae), uma espécie de maracujá nativa no Rio Grande do Sul, é estudada em relação à biologia reprodutiva e ao processo de polinização. As avaliações são realizadas em populações cultivadas de P. suberosa presentes em áreas urbanas no Munícipio de Porto Alegre, RS. Aspectos concernentes à biologia floral foram avaliadas em uma população do Campus do Vale(UFRGS). A observação e coleta dos visitantes florais foi realizada em um jardim residencial, no bairro Passo da Areia. Avalia-se o sistema reprodutivo de P. suberosa em condições de campo através de três tratamentos: xenogamia, autogamia espontânea e autogamia manual. Um grupo de flores é marcado e deixado em condições naturais(controle) para se observar a formação de frutos. O padrão de produção e o volume de néctor produzido foram observados em flores isoladas e amostradas a cada duas horas das 8 as 18 horas. O efeito provocado pela remoção intermitente de néctar foi avaliado nas mesmas flores. A quantidade diária de néctar produzida foi avaliada utilizando-se um novo conjunto de flores a cada amostragem Para verificar o padrão de disponibilização diária de pólen, amostrou-se flores isoladas a cada 30 minutos, das 7 às 14 horas. Similarmente, flores não isoladas foram avaliadas para determinar quanto tempo o pólen permanece disponível na presença dos visitantes florais.A receptividade do estigma foi testada in vivo, por meio de polinização manual em flores emasculadas, das 8 até às 18 horas. Os visitantes florais foram monitorados de dezembro de 2001 a novembro de 2002.Observações seguidas de coleta foram realizadas a cada quinze dias, no período entre as 8 e as 14 horas. Nessas ocasiões, as flores abertas foram contadas e registrava-se a posição das pétalas, anteras e estigmas. Os visitantes florais foram observados em relação a hora da visita, contato com anteras e/ou estigmas, partes do corpo que contava as estruturas reprodutivas, presença de pólen no corpo e taxa de visita Os grãos de pólen aderidos no dorso dos insetos foram montados em lâminas microscópicas e analisadas em laboratório. Os resotados indicam que P. suberosa é autocompatível, entretanto a autofecundação espontânea não parece ser freqüente devido a posição das anteras e estigmas na flor. O polén não é disponibilizado de forma gradual, devido ao fato das cinco anteras de uma mesma flor tornarem-se deiscentes em tempos diferentes, desde a abertura da flor até o final da manhã, período em que todo o pólen está disponível. O número de flores com estigmas receptivos na população variou durante o dia, sendo o período entre 10 e 15 horas aquele em que se observou o maior número de flores receptivas. As flores P. suberosa já abriram com algum néctar disponível e continuaram produzindo. As 10 horas observou-se o volume máximo de néctar produzido durante o dia. As folhas foram visitadas principalmente por Polybia ignobilis, Pachodynerus guadulpensis, Polistes versicolor, Polistes cavapytiformis (Vespidae), por Augochloropsis sp. e Augochlorella ephyra (halictidae) e por Apis mellifera(Apidae). Ainda que todos os visitantes florais amostrados possam polinizar as flores, Polybia ignobilis, dado os seus atributos morfológicos, padrão comportamental de forrageio e a grande quantidade de pólen amostrada sobre a região dorsal do tórax, foi aquela que efetivamente contribuiu para a polinização da população de P. suberosa estudada.

Abstrações para uma linguagem de programação visando aplicações móveis em um ambiente de Pervasive Computing

Computação Móvel é um termo genérico, ainda em definição, ao redor do qual se delineia um espectro de cenários possíveis, desde a Computação Pessoal, com o uso de computadores de mão, até a visão futurista da Computação Ubíqua. O foco do projeto ISAM (Infra-estrutura de Suporte às Aplicações Móveis Distribuída), em desenvolvimento no II/UFRGS, é a Pervasive Computing. Esta desenha um cenário onde o usuário é livre para se deslocar mantendo o acesso aos recursos da rede e ao seu ambiente computacional, todo tempo em qualquer lugar. Esse novo cenário apresenta muitos desafios para o projeto e execução de aplicações. Nesse escopo, esta tese aprofunda a discussão sobre questões relativas à adaptação ao contexto em um ambiente pervasivo sob a ótica de uma Linguagem de Programação, e define uma linguagem chamada ISAMadapt. A definição da linguagem ISAMadapt baseia-se em quatro abstrações: contexto, adaptadores, políticas e comandos de adaptação. Essas abstrações foram concretizadas em duas visões: (1) em tempo de programação, através de comandos da linguagem e arquivos de configuração, descritos com o auxílio do Ambiente de Desenvolvimento de Aplicações; (2) em tempo de execução, através de serviços e APIs fornecidos pelos componentes que integram o ambiente de execução pervasiva (ISAMpe). Deste, os principais componentes que implementam a semântica de execução da aplicação ISAMadapt são: o serviço de reconhecimento de contexto, ISAMcontextService, e a máquina de execução da adaptação dinâmica, ISAMadaptEngine.As principais contribuições desta tese são: (a) primeira linguagem para a codificação de aplicações pervasivas; (b) sintaxe e semântica de comandos para expressar sensibilidade ao contexto pervasivo; (c) fonte para o desenvolvimento de uma metodologia de projeto de aplicações pervasivas; (d) projeto ISAM e o projeto contextS (www.inf.ufrgs.br/~isam) que fornecem suporte para o ciclo de vida das aplicações, desde o desenvolvimento até a execução de aplicações pervasivas.

Polvo violonista : sistema multiagente para simulação de performances em violão

Este trabalho apresenta um sistema multiagente que permite simular execuções musicais em violão. Em uma execução musical no violão observam-se elementos distintos que, trabalhando em conjunto, produzem a sonoridade desejada pelo músico. Ou seja, as ações tomadas pelo violonista, através do sincronismo de suas mãos sobre o instrumento, influenciam diretamente na sonoridade obtida. A idéia básica deste trabalho é desenvolver uma comunidade de agentes que represente as entidades envolvidas em uma performance musical de violão. Quatro agentes foram identificados e modelados no contexto desta dissertação. São eles: Mão Esquerda (ME): Responsável pela execução dos acordes, ou seja, deve possuir o conhecimento de formação de acordes dada a afinação do instrumento bem como a interpretação das cifras que representam os acordes. Agente Mão Direita (MD): Responsável pelo ritmo impresso na música; Caixa de Som (CS): Permite que os usuários simplesmente escutem a composição, sem nenhuma (ou muito pouca) interferência na composição. Agente Solista (SL): Projetado somente para ler arquivos MIDI e enviar notas para o Agente Caixa de Som (CS). O conhecimento relativo ao reconhecimento das cifras, geração do acorde e posterior cálculo do desenho do acorde para um instrumento de corda foi encapsulado em duas bibliotecas que visam auxiliar no desenvolvimento de outros novos projetos que necessitem de funcionalidades similares. Ainda, são abordadas as questões da comunicação entre os agentes e componentes gráficos utilizados na captura de informações rítmicas. O material musical produzido pelo sistema está contido no CD-ROM em anexo, bem como a documentação das API’s.