Data-Driven Motion Detection and Characterization in PET Brain Scans Using List Mode

Head motion during a Positron Emission Tomography (PET) brain scan can considerably degrade image quality. External motion-tracking devices have proven successful in minimizing this effect, but the associated time, maintenance, and workflow changes inhibit their widespread clinical use. List-mode PET acquisition allows for the retroactive analysis of coincidence events on any time scale throughout a scan, and therefore potentially offers a data-driven motion detection and characterization technique. An algorithm was developed to parse list-mode data, divide the full acquisition into short scan intervals, and calculate the line-of-response (LOR) midpoint average for each interval. These LOR midpoint averages, known as “radioactivity centroids,” were presumed to represent the center of the radioactivity distribution in the scanner, and it was thought that changes in this metric over time would correspond to intra-scan motion.

Several scans were taken of the 3D Hoffman brain phantom on a GE Discovery IQ PET/CT scanner to test the ability of the radioactivity to indicate intra-scan motion. Each scan incrementally surveyed motion in a different degree of freedom (2 translational and 2 rotational). The radioactivity centroids calculated from these scans correlated linearly to phantom positions/orientations. Centroid measurements over 1-second intervals performed on scans with ~1mCi of activity in the center of the field of view had standard deviations of 0.026 cm in the x- and y-dimensions and 0.020 cm in the z-dimension, which demonstrates high precision and repeatability in this metric. Radioactivity centroids are thus shown to successfully represent discrete motions on the submillimeter scale. It is also shown that while the radioactivity centroid can precisely indicate the amount of motion during an acquisition, it fails to distinguish what type of motion occurred.

Avaliação da qualidade de vida e da autopercepção corporal em mulheres com câncer de mama submetidas à reconstrução mamária

O câncer de mama compõe-se de 22% dos casos novos verificados a cada ano, configurando o segundo tipo de doença mais frequente entre as mulheres. O tratamento para esse tipo de enfermidade, bem como os sintomas apresentados, provocam alterações psicológicas nas mulheres, afetando a dimensão da auto-imagem do dado existencial do ser. Logo, a escolha pela reconstrução mamária tem mostrado uma adaptação da imagem que cada mulher produz de si, e isso concorre para restabelecer o equilíbrio psicológico que é afetado, diante do diagnóstico e da perda da mama. A fisioterapia é essencial tanto na preparação, quanto após a intervenção cirúrgica das pacientes, tendo como premissa a recuperação das suas funções e também, no restabelecimento da sua autoimagem corporal, podendo minimizar os efeitos adversos da reconstrução mamária. Nesse ínterim, em uma forma transversal prospectiva, este estudo teve como objetivo, avaliar a qualidade de vida e da autopercepção corporal em pacientes com câncer de mama submetidas à reconstrução mamária, relacionando a qualidade de vida com a realização ou não da fisioterapia, após o processo da intervenção cirúrgica. Como resultados, observou-se a existência de correlações entre a IC - Imagem Corporal e os domínios da qualidade de vida, com uma correlação moderada significativa apenas no domínio psicológico e que correspondeu à melhor imagem corporal da paciente. Quanto à imagem corporal, todas as pacientes demonstraram um índice satisfatório na escala corporal. Quando comparado à execução ou não da fisioterapia apresentaram igual comportamento para quem fez e para aquelas que não realizaram fisioterapia. Na verificação de quem fez ou não fisioterapia, a satisfação foi superior no grupo que fez, e a insatisfação foi menor nesse grupo do que naquele que não realizou fisioterapia.

Qualidade de imagem em mamografia: apresentação do músculo grande peitoral na incidência oblíqua médio-lateral

A mamografia é, atualmente, o principal método de diagnóstico imagiológico da patologia mamária, sendo, por isso, essencial a produção consistente de imagens mamográficas de elevada qualidade. Assim, e uma vez que a mamografia visa a maximização da visualização do tecido mamário, o principal objetivo deste estudo consiste em investigar a apresentação mamográfica do músculo grande peitoral na incidência oblíqua médio-lateral (OML) da mama. Pretendeu-se relacionar os padrões técnicos de aquisição de imagem à forma de apresentação do referido músculo, avaliando-os de acordo com os atuais critérios de qualidade de imagem. As imagens mamográficas foram recolhidas a partir de duas instituições hospitalares de referência do Porto, sendo posteriormente efetuada uma análise e tratamento estatístico dos indicadores qualitativos e quantitativos de qualidade das mesmas. Numa análise global por instituição, e tendo por base estes indicadores, a instituição que utiliza uma angulação fixa do potter-bucky, independentemente do biótipo corporal da paciente, apresentou resultados melhores, indicando assim que a existência de falhas devido a erros de posicionamento é menor por comparação aos critérios de qualidade padrão. Constatou-se, portanto, que a angulação do potter-bucky tem um impacto relevante e estatisticamente significativo na qualidade das imagens mamográficas.

Optical micro-tomography “OPenT” allows the study of large toadfish Halobatrachus didactylus embryos and larvae

Batrachoidids, which include midshipman and toadfish are less known among embryologists, but are common in other fields. They are characteristic for their acoustic communication, and develop hearing and sound production while young juveniles. They lay large benthic eggs (>5mm) with a thick chorion and adhesive disk and slow development, which are particularly challenging for studying embryology. Here we took advantage of a classical tissue clearing technique and the OPenT open-source platform for optical tomography imaging, to image a series of embryos and larvae from 3 to 30mm in length, which allowed detailed 3D anatomical reconstructions non-destructively. We documented some of the developmental stages (early and late in development) and the anatomy of the delicate stato-acoustic organs, swimming bladder and associated sonic muscles. Compared to other techniques accessible to developmental biology labs, OPenT provided advantages in terms of image quality, cost of operation and data throughput, allowing identification and quantitative morphometrics of organs in larvae, earlier and with higher accuracy than is possible with other imaging techniques.

A non-contrast self-navigated 3-dimensional MR technique for aortic root and vascular access route assessment in the context of transcatheter aortic valve replacement: proof of concept.

OBJECTIVES: Due to the high prevalence of renal failure in transcatheter aortic valve replacement (TAVR) candidates, a non-contrast MR technique is desirable for pre-procedural planning. We sought to evaluate the feasibility of a novel, non-contrast, free-breathing, self-navigated three-dimensional (SN3D) MR sequence for imaging the aorta from its root to the iliofemoral run-off in comparison to non-contrast two-dimensional-balanced steady-state free-precession (2D-bSSFP) imaging. METHODS: SN3D [field of view (FOV), 220-370 mm(3); slice thickness, 1.15 mm; repetition/echo time (TR/TE), 3.1/1.5 ms; and flip angle, 115°] and 2D-bSSFP acquisitions (FOV, 340 mm; slice thickness, 6 mm; TR/TE, 2.3/1.1 ms; flip angle, 77°) were performed in 10 healthy subjects (all male; mean age, 30.3 ± 4.3 yrs) using a 1.5-T MRI system. Aortic root measurements and qualitative image ratings (four-point Likert-scale) were compared. RESULTS: The mean effective aortic annulus diameter was similar for 2D-bSSFP and SN3D (26.7 ± 0.7 vs. 26.1 ± 0.9 mm, p = 0.23). The mean image quality of 2D-bSSFP (4; IQR 3-4) was rated slightly higher (p = 0.03) than SN3D (3; IQR 2-4). The mean total acquisition time for SN3D imaging was 12.8 ± 2.4 min. CONCLUSIONS: Our results suggest that a novel SN3D sequence allows rapid, free-breathing assessment of the aortic root and the aortoiliofemoral system without administration of contrast medium. KEY POINTS: • The prevalence of renal failure is high among TAVR candidates. • Non-contrast 3D MR angiography allows for TAVR procedure planning. • The self-navigated sequence provides a significantly reduced scanning time.

Simulador radiográfico antropomórfico de mama humana

Mammography is a diagnostic imaging method in which interpretation depends on knowledge of radiological aspects as well as the clinical exam and pathophysiology of breast diseases. In this work a mammography phantom was developed to be used for training in the operation of mammographic x-ray equipment, image quality evaluation, self-examination and clinical examination of palpation. Polyurethane was used for the production of the phantoms for its physical and chemical properties and because it is one of the components normally used in prostheses. According to the range of flexibility of the polyurethane, it was possible to simulate breasts with higher or lower amount of adipose tissue. Pathologies such as areolar necrosis and tissue rejection due to surgery reconstruction after partial mastectomy were also simulated. Calcifications and nodules were simulated using the following materials: polyethylene, poly (methyl methacrylate), polyamide, polyurethane and poly (dimethyl silicone). Among these, polyethylene was able to simulate characteristics of calcification as well as breast nodules. The results from mammographic techniques used in this paper for the evaluation of the phantoms are in agreement with data found in the literature. The image analyses of four phantoms indicated significant similarities with the human skin texture and the female breast parenchyma. It was possible to detect in the radiographic images produced regions of high and low radiographic optical density, which are characteristic of breasts with regions of different amount of adipose tissue. The stiffnesses of breast phantoms were adjusted according to the formulation of the polyurethane which enabled the production of phantoms with distinct radiographic features and texture similar to human female breast parenchyma. Clinical palpation exam of the phantoms developed in this work indicated characteristics similar to human breast in skin texture, areolar region and parenchyma

Optimization of Pattern Matching Algorithms for Multi- and Many-Core Platforms

Image and video compression play a major role in the world today, allowing the storage and transmission of large multimedia content volumes. However, the processing of this information requires high computational resources, hence the improvement of the computational performance of these compression algorithms is very important. The Multidimensional Multiscale Parser (MMP) is a pattern-matching-based compression algorithm for multimedia contents, namely images, achieving high compression ratios, maintaining good image quality, Rodrigues et al. [2008]. However, in comparison with other existing algorithms, this algorithm takes some time to execute. Therefore, two parallel implementations for GPUs were proposed by Ribeiro [2016] and Silva [2015] in CUDA and OpenCL-GPU, respectively. In this dissertation, to complement the referred work, we propose two parallel versions that run the MMP algorithm in CPU: one resorting to OpenMP and another that converts the existing OpenCL-GPU into OpenCL-CPU. The proposed solutions are able to improve the computational performance of MMP by 3 and 2:7 , respectively. The High Efficiency Video Coding (HEVC/H.265) is the most recent standard for compression of image and video. Its impressive compression performance, makes it a target for many adaptations, particularly for holoscopic image/video processing (or light field). Some of the proposed modifications to encode this new multimedia content are based on geometry-based disparity compensations (SS), developed by Conti et al. [2014], and a Geometric Transformations (GT) module, proposed by Monteiro et al. [2015]. These compression algorithms for holoscopic images based on HEVC present an implementation of specific search for similar micro-images that is more efficient than the one performed by HEVC, but its implementation is considerably slower than HEVC. In order to enable better execution times, we choose to use the OpenCL API as the GPU enabling language in order to increase the module performance. With its most costly setting, we are able to reduce the GT module execution time from 6.9 days to less then 4 hours, effectively attaining a speedup of 45 .

A ansiedade em doentes submetidos a exame de ressonância magnética

A Ressonância Magnética (RM) é uma técnica capaz de obter informação relativa à anatomia, fisiologia e fisiopatologia de órgãos internos de um modo não invasivo, permitindo a deteção precoce e caracterização das doenças, contribuindo para a decisão terapêutica. As suas características podem causar ansiedade nos pacientes, levando a uma diminuição da qualidade das imagens radiológicas, resultados falaciosos/inconclusivos e desistência dos pacientes. Neste âmbito, foram realizados dois estudos. O primeiro para validar os instrumentos utilizados. O segundo, exploratório, procurou aprofundar conhecimento sobre a ansiedade associada à realização de RM, relacionando-a com variáveis como o número de vezes que o paciente realizou o exame, as diferentes categorias do exame e o conhecimento prévio do doente sobre este. No primeiro estudo, demonstrou-se a validade dos instrumentos aplicados. No segundo, corroboram-se algumas hipóteses e foi possível compreender o funcionamento das variáveis na presente amostra, demonstrando que são necessários estudos mais aprofundados sobre o tema; ABSTRACT: Magnetic Resonance Imaging (MRI) is a technique to obtain information about the anatomy, physiology and pathophysiology of internal organs of a noninvasively way, allowing the early detection and characterization of the diseases, contributing to the therapeutic decision. The characteristics of this exam may cause anxiety in patients, leading to a decrease in radiological images quality, fallacious/inconclusive results and patient withdrawal. In this context, two studies were conducted. The first to validate the instruments used. The second, exploratory, sought to deepen knowledge about the anxiety associated with MRI, relating it to variables such as the number of times the patient underwent the examination, the different categories of MRI, and previous knowledge about the MRI. In the first study, the validity of the applied instruments was demonstrated. In the second, some hypotheses were corroborated and allowed us to understand the functioning of the variables in the present sample, demonstrating the need for more in-depth studies on the subject.

CO2-EVAR: An innovative approach to Automated Carbon Dioxide Angiography during Endovascular Abdominal Aortic Aneurysm repair

Objectives CO2-EVAR was proposed for treatment of AAA especially in patients with CKD. Issues regarding standardization, such as visualization of lowest renal artery (LoRA) and quality image in angiographies performed from pigtail or introducer-sheath, are still unsolved. Aim of the study was to analyze different steps of CO2-EVAR to create an operative protocol to standardize the procedure. Methods Patients undergoing CO2-EVAR were prospectively enrolled in 5 European centers (2018-2021). CO2-EVAR was performed using an automated injector. LoRA visualization and image quality (1-4) were analyzed and compared at different procedure steps: preoperative CO2-angiography from Pigtail/Introducer-sheath (1st Step), angiographies from Pigtail at 0%,50%,100% main body (MB) deployment (2nd Step), contralateral hypogastric artery (CHA) visualization with CO2 injection from femoral Introducer-sheath (3rd Step) and completion angiogram from Pigtail/Introducer-sheath (4th Step). Intra-/postoperative adverse events were evaluated. Results Sixty-five patients undergoing CO2-EVAR were enrolled, 55/65(84.5%) male, median age 75(11.5) years. Median ICM was 20(54)cc; 19/65(29.2%) procedures were performed with 0-iodine. 1st Step: median image quality was significantly higher with CO2 injected from femoral introducer [Pigtail2(3)vs.3(3)Introducer,p=.008]. 2nd Step: LoRA was more frequently detected at 50% (93%vs.73.2%, p=.002) and 100% (94.1%vs.78.4%, p=.01) of MB deployment compared with first angiography from Pigtail; image quality was significantly higher at 50% [3(3)vs.2(3),p=<.001] and 100% [4(3) vs.2(3),p=.001] of MB deployment. CHA was detected in 93% cases (3rd Step). Mean image quality was significantly higher when final angiogram (4th Step) was performed from introducer (Pigtail2.6±1.1vs.3.1±0.9Introducer,p=<.001). Rates of intra-/postoperative adverse events (pain,vomit,diarrhea) were 7.7% and 12.5%. Conclusions Preimplant CO2-angiography should be performed from Introducer-sheath. MB steric bulk during its deployment should be used to improve image quality and LoRA visualization with CO2. CHA can be satisfactorily visualized with CO2. Completion CO2-angiogram should be performed from femoral Introducer-sheath. This operative protocol allows to perform CO2-EVAR with minimal ICM and low rate of mild complications.

Experimental evaluation of the z-resolution in different clinical Digital Breast Tomosynthesis systems using commercial phantoms

Digital Breast Tomosynthesis (DBT) is an advanced mammography technique based on the reconstruction of a pseudo-volumetric image. To date, image quality represents the most deficient section of DBT quality control protocols. In fact, related tests are not yet characterized by either action levels or typical values. This thesis work focuses on the evaluation of one aspect of image quality: the z-resolution. The latter is studied in terms of Artifact Spread Function (ASF), a function that describes the signal spread of a detail along the reconstructed focal planes. To quantify the ASF numerically, its Full Width at Half Maximum (FWHM) is calculated and used as a representative index of z-resolution. Experimental measurements were acquired in 24 DBT systems, of 7 different models, currently in use in 20 hospital facilities in Italy. The analysis, performed on the clinical reconstructed images, of 5 different commercial phantoms, lead to the identification of characteristic FWHM values for each type of DBT system. The ASF clearly showed a dependence on the size of the detail, providing higher FWHM values for larger objects. The z-resolution was found to be positively influenced by the acquisition angle: Fujifilm sistematically showed wider ASF profiles in ST mode (15°) than in HR mode (40°). However, no clear relationship was found between angular range and ASF, among different DBT systems, due to the influence of the peculiarities of each reconstruction algorithm. The experimental approach shown in this thesis work can be proposed as a z-resolution quality control test procedure. Contextually, the values found could be used as a starting point for identifying typical values to be included in the test, in a DBT protocol. Clearly, a statistically significant number of images is needed to do this. The equipment involved in this work is located in hospitals and is not available for research purposes, so only a limited amount of data was acquired and processed.

Characterization of a prototype for cone beam breast computed tomography

The project aims to experiment the Cone Beam Breast Computed Tomography technique using a standard digital mammography system. The work is focused on the definition of a protocol of quality measurements for the pre-clinical evaluation of the machine. The paper is developed in two parts. The first is specifically concerned with the methods used to define the image quality and dosimetry aspects specific for digital mammography devices. A complete characterization of the system has been performed according to the applicable IEC standards to assure the performances of the equipment and define the quality levels. Due to the lack of a quality control protocol dedicated to CBBCT mammography scanner, a new equivalent test procedure has been proposed. The second part of the paper is focused on the evaluation, through quantitative and visual analyzes, of the CBCT exam feasibility in the hardware and software conditions currently proposed by IMS Giotto. The prototype was in fact developed differing from the technical choices of competing companies and developed for a different intended use. The main difference with respect to the existing breast CT scanners is the possibility of performing on the same system the CBBCT scanning but also all the mammographic techniques. In this thesis, we aim to assess whether, in the current setup, considering a dosimetric range very close to that used in the clinic, the tests produce results that can be considered acceptable or at least indicative of the feasibility of the entire project from a commercial point of view. For this purpose, the final reconstruction images, obtained by two previously developed software, are analyzed.

Comparison of multispectral wide-field optical imaging modalities to maximize image contrast for objective discrimination of oral neoplasia

Multispectral widefield optical imaging has the potential to improve early detection of oral cancer. The appropriate selection of illumination and collection conditions is required to maximize diagnostic ability. The goals of this study were to (i) evaluate image contrast between oral cancer/precancer and non-neoplastic mucosa for a variety of imaging modalities and illumination/collection conditions, and (ii) use classification algorithms to evaluate and compare the diagnostic utility of these modalities to discriminate cancers and precancers from normal tissue. Narrowband reflectance, autofluorescence, and polarized reflectance images were obtained from 61 patients and 11 normal volunteers. Image contrast was compared to identify modalities and conditions yielding greatest contrast. Image features were extracted and used to train and evaluate classification algorithms to discriminate tissue as non-neoplastic, dysplastic, or cancer; results were compared to histologic diagnosis. Autofluorescence imaging at 405-nm excitation provided the greatest image contrast, and the ratio of red-to-green fluorescence intensity computed from these images provided the best classification of dysplasia/cancer versus non-neoplastic tissue. A sensitivity of 100% and a specificity of 85% were achieved in the validation set. Multispectral widefield images can accurately distinguish neoplastic and non-neoplastic tissue; however, the ability to separate precancerous lesions from cancers with this technique was limited. (C) 2010 Society of Photo-Optical Instrumentation Engineers. [DOI: 10.1117/1.3516593]

Image calibration to like-values in mapping shallow water quality from multitemporal data

The applicability of image calibration to like-values in mapping water quality parameters from multitemporal images is explored, Six sets of water samples were collected at satellite overpasses over Moreton Bay, Brisbane, Australia. Analysis of these samples reveals that waters in this shallow bay are mostly TSS-dominated, even though they are occasionally dominated by chlorophyll as well. Three of the images were calibrated to a reference image based on invariant targets. Predictive models constructed from the reference image were applied to estimating total suspended sediment (TSS) and Secchi depth from another image at a discrepancy of around 35 percent. Application of the predictive model for TSS concentration to another image acquired at a time of different water types resulted in a discrepancy of 152 percent. Therefore, image calibration to like-values could be used to reliably map certain water quality parameters from multitemporal TM images so long as the water type under study remains unchanged. This method is limited in that the mapped results could be rather inaccurate if the water type under study has changed considerably. Thus, the approach needs to be refined in shallow water from multitemporal satellite imagery.