Time and space: genetic structure of the common sea urchin paracentrotus lividus in the south-eastern iberian coast

Spatio-temporal variability in settlement and recruitment, high mortality during the first life-history stages, and selection may determine the genetic structure of cohorts of long-lived marine invertebrates at small scales. We conducted a spatial and temporal analysis of the common Mediterranean Sea urchin Paracentrotus lividus to determine the genetic structure of cohorts at different scales. In Tossa de Mar (NW Mediterranean), recruitment was followed over 5 consecutive springs (2006-2010). In spring 2008, recruits and two-year-old individuals were collected at 6 locations along East and South Iberian coasts separated from 200 to over 1,100 km. All cohorts presented a high genetic diversity based on a fragment of mtCOI. Our results showed a marked genetic homogeneity in the temporal monitoring and a low degree of spatial structure in 2006. In 2008, coupled with an abnormality in the usual circulation patterns in the area, the genetic structure of the southern populations studied changed markedly, with arrival of many private haplotypes. This fact highlights the importance of point events in renewing the genetic makeup of populations, which can only be detected through analysis of the cohort structure coupling temporal and spatial perspectives.

'Reflexos d'Apol·lo'. Educació i esport a la Mediterrània antiga

En ocasió dels XV Jocs de la Mediterrània celebrats a Almeria l"any 2005 es va organitzar una exposició, del 6 de juny al 28 d"agost, sota el títol de Reflexos d"Apol·lo, que després va viatjar a Tarragona on va romandre al Museu Nacional Arqueològic de Tarragona, del 22 de desembre de 2006 al 4 de febrer de 2007. Finalment, s"ha exposat a Barcelona, del 22 de febrer al 20 de maig de 2007, al Museu d"Arqueologia de Catalunya, exposició que vam visitar i que dóna peu a aquest comentari que presentem a manera de reflexió bibliogràfica1. Situats en aquest punt, assenyalem que ens trobem davant d"una exposició itinerant que ha permès gaudir d"una mostra de materials arqueològics (vasos, àmfores, estàtues, copes, ceràmiques, monedes, mosaics, etc.), procedents en bona part del Museo Arqueológico Nacional de Madrid (MAN), que gira entorn d"un tema, el de l"esport i la competició, però que no ha bandejat -ans al contrari- la presència de l"educació física en el món clàssic.

Las riberas de los rios mediterraneos y su calidad: el uso del indice QBR

Se ha aplicado el QBR (índice de calidad del bosque de ribera) a 157 estaciones de muestreo localizadas en ríos pertenecientes a 12 cuencas diferentes del ámbito mediterráneo español. Los resultados indican que más del 34 % de las estaciones muestran valores de calidad buenos y muy buenos (QBR > 75), mientras que el 45 % presenta valores de mala y pésima calidad (QBR < 50). Según una tipología previa establecida para clasificar las estaciones de muestreo, los valores de mayor calidad de QBR se dan en estaciones de cabecera de cuencas calcáreas y en las zonas de karst. Los tipos denominados temporales y ramblas presentan los valores más bajos de calidad, o no tiene representantes de máxima calidad. La ausencia o escasez de bosques de riberas de máxima calidad en las cuencas del sur peninsular puede explicarse por el gradiente de aridez que se establece desde el norte hacia el sur. Además existe un evidente deterioro de las riberas desde las cabeceras a las desembocaduras de los ríos, de manera que ambos factores influyen en el estado actual de las riberas de los ríos mediterráneos ibéricos. Finalmente se discute la utilidad y limitaciones del QBR en ríos sometidos a situaciones de estrés hídrico o ambiental.

The role of MAR elements in DNA recombination

The untargeted integration of foreign DNA into the mammalian cell genome, extensively used in gene therapy and biotechnology, remains an incompletely understood process. It is believed to be based on cellular DNA double strand break (DSB) repair machinery and to involve two major steps: i) the formation of long gene arrays (concatemers), and ii) recombination of the resulting concatemer with the genome. The main DSB repair pathways in eukaryotes include non-homologous end-joining (NHEJ), homologous recombination (HR), and microhomology-mediated end-joining (MMEJ). However, it is still not clear, which of these pathways are responsible for transgene integration. Here, we show that NHEJ is not the primary pathway used by mammalian cells in the transgene integration process, while the components of the HR pathway seem to be important for genomic integration but not concatemerization. Instead, concatemer formation appears to be mediated by a subset of the MMEJ pathway, termed synthesis-dependent MMEJ (SD-MMEJ). This mechanism also seems to be preferentially used for plasmid integration into the genome, as confirmed by the analysis of plasmid-to-genome junction sequences, which were found to display an SD-MMEJ pattern. Therefore, we propose the existence of two distinct SD-MMEJ subpathways, relying on different subsets of enzymes. One of these mechanisms appears to be responsible for concatemerization, while the other mechanism, partially dependent in HR enzymes, seems to mediate recombination with the genome. Previous studies performed by our group suggested that matrix attachment regions (MARs), which are epigenetic regulatory DNA elements that participate in the formation of chromatin boundaries and augment transcription, may mediate increased plasmid integration into the genome of CHO cells by stimulating DNA recombination. In the present work, we demonstrate that MAR-mediated plasmid integration results from the enhanced SD-MMEJ pathway. Analysis of transgene integration loci and junction DNA sequences validated the prevalent use of this pathway by the MAR elements to target plasmid DNA into gene-rich areas of the CHO genome. We propose that this finding should in the future help to engineer cells for improved recombinant protein production. In addition to investigating the process of transgene integration, we designed recombination assays to better characterize the components of the MMEJ and SD-MMEJ pathways. We also used CHO cells expressing cycle-sensitive reporter genes to demonstrate a potential role of HR proteins in the cell cycle regulation.

Genetic variation in the European hake, Merluccius merluccius. Description of protein loci and genetic divergence between Atlantic and Mediterranean populations = Anàlisi de la variabilitat genètica en el lluç europeu, Merluccius merluccius. Descripció dels loci electroforètics i divergència genètica entre les poblacions atlàntica i mediterrània

We examined the genetic population structure of the european hake (Merluccius merluccius) using electrophoretically detectable population markers in 35 protein loci. Samples were collected from 7 locations in the Atlantic Ocean and Mediterranean Sea. Six loci were polymorphic using the 0.05 criterion of polymorphism. Sample heterozigosities ranged from 0.052 to 0.072 and averaged 0.0625. In this study, significant allele frequency differences were detected between Atlantic and Mediterranean populations in three polymorphic loci: GAPDH-1*, GPI-2* and SOD-1*. Two major genetic groups were considered: a North-Atlantic stock and the Mediterranean stock. The Nei genetic distance, D, (based on 33 loci) between samples from these two groups ranged from 0.002 to 0.006. Genetic differenciation between these areas appears to reflect the barrier effect of Strait of Gibraltar. On average over loci, 96.92 % of the total gene diversity was contained within samples, 0.23 % expressed differences among locations within areas, and 2.64 % differences between regions. A review of morphological variation together with the genetic data presented here suggest that the populations of hake from these areas are subdivided into two different stocks: the North-Atlantic stock and the Mediterranean stock. The most conservative approach to the management of these stocks is to consider the Atlantic and Mediterranean stocks independently from oneanother

El medi marí del cap de Creus i el golf de Roses

El medi marí de cap de Creus i golf de Roses té unes característiques ecològiques, geològiques i oceanogràfiques excepcionals que han permès el desenvolupament turístic i pesquer de les viles costaneres adjacents, Aquest article sintetitza els principals valors ecològics i econòmics de l'àmbit marí d'aquests dos espais inclosos dins la candidatura de Patrimoni Mundial de la UNESCO

Entrevista a Mar Cruz Piñol

Mar Cruz Piñol es profesora titular de Lengua Española en la Facultad de Filología de la Universidad de Barcelona, donde desde 1995 ha impartido, entre otras, las asignaturas"Cuestiones del español como L2","Lingüística de corpus","Bases de datos para el estudio de la lengua española" y"Metodología de la investigación filológi- ca".

Polyphenol intake and mortality risk: a re-analysis of the PREDIMED trial

Background: Polyphenols may lower the risk of cardiovascular disease (CVD) and other chronic diseases due to their antioxidant and anti-inflammatory properties, as well as their beneficial effects on blood pressure, lipids and insulin resistance. However, no previous epidemiological studies have evaluated the relationship between the intake of total polyphenols intake and polyphenol subclasses with overall mortality. Our aim was to evaluate whether polyphenol intake is associated with all-cause mortality in subjects at high cardiovascular risk. Methods: We used data from the PREDIMED study, a 7,447-participant, parallel-group, randomized, multicenter, controlled five-year feeding trial aimed at assessing the effects of the Mediterranean Diet in primary prevention of cardiovascular disease. Polyphenol intake was calculated by matching food consumption data from repeated food frequency questionnaires (FFQ) with the Phenol-Explorer database on the polyphenol content of each reported food. Hazard ratios (HR) and 95% confidence intervals (CI) between polyphenol intake and mortality were estimated using time-dependent Cox proportional hazard models. Results: Over an average of 4.8 years of follow-up, we observed 327 deaths. After multivariate adjustment, we found a 37% relative reduction in all-cause mortality comparing the highest versus the lowest quintiles of total polyphenol intake (hazard ratio (HR) = 0.63; 95% CI 0.41 to 0.97; P for trend = 0.12). Among the polyphenol subclasses, stilbenes and lignans were significantly associated with reduced all-cause mortality (HR =0.48; 95% CI 0.25 to 0.91; P for trend = 0.04 and HR = 0.60; 95% CI 0.37 to 0.97; P for trend = 0.03, respectively), with no significant associations apparent in the rest (flavonoids or phenolic acids). Conclusions: Among high-risk subjects, those who reported a high polyphenol intake, especially of stilbenes and lignans, showed a reduced risk of overall mortality compared to those with lower intakes. These results may be useful to determine optimal polyphenol intake or specific food sources of polyphenols that may reduce the risk of all-cause mortality.

Espectrofotometría de absorción atómica con tubo en la llama: aplicación en la determinación total de cadmio, plomo y zinc en aguas frescas, agua de mar y sedimentos marinos

Thermospray flame furnace Atomic Absorption Spectrometry (TS-FF-AAS) was used for the total determination of Cd, Pb and Zn in fresh water and seawater samples at µg L-1 levels, and in marine sediment samples at µg g-1 levels. Using a sample loop of 50 µL and a peristaltic pump the samples were transported into the metallic tube placed over an air/acetylene flame, through a ceramic capillary (o.d. = 3.2 mm) containing two parallel internal orifices (i.d = 0.5 mm). The detection limits determined for Cd, Pb and Zn using a synthetic water matrix (2.5% m/v NaCl, 0.5% m/v MgCl2 and 0.8% m/v CaCl2) were 0.32 µg L-1; 2.6 µg L-1 and 0.21 µg L-1 respectively. The methodology by TS-FF-AAS was validated by determination of Cd, Pb and Zn in certified reference materials of water and marine sediment, and the t-test for differences between means was applied. No statistically significant differences were established in fresh water and seawater (p>0.05), whereas differences became apparent in marine sediment (p<0.03).

Estimativa do fluxo de amônia na interface ar-mar na Baía de Guanabara: estudo preliminar

In the begining of April 2004, concentrations of NHx (NH3 + NH4+) were measured in surface waters of the Guanabara Bay. Concentrations varied from 2 to 143 mmol L-1. Ammonia exchange at the air-sea interface was quantified using a numerical model. No measurement of NH3 concentration in air (c air) was performed. Thus, calculations of NH3 flux were based on the assumptions of c air = 1 and 5 µg m-3. Fluxes were predominantly from the water to the atmosphere and varied from -20 to almost 3500 µg N m-2 h-1.

Informe d'Autors UOC a ISI Web of Knowledge. Març 2015

UOC

Navegar y rezar: devoción y piedad de las gentes de mar barcelonesas (siglos XIV y XV)

Sobre la devoció i la pietat religiosa de la gent de mar de Barcelona dels segles XIV i XV

Fluxos de óxido nitroso na interface ar-mar na Baía de Guanabara

In Surface water concentrations of N2O were measured at 37 stations in Guanabara Bay and fluxes estimated across the air-sea interface. Concentrations averaged 8.2 ± 2.2 nmol L-1 and 90% of the stations showed supersaturation averaging 33%. N2O fluxes were estimated using a two-film model which is given by the product of the concentration difference across the film and the gas transfer coefficient (k w). Two parametrizations of k w were used which provided average fluxes of 0.3 and 3.0 µg N m-2 h-1. Flux measurements using floating chambers (not reported here) seem to agree with the upper limit of these estimates.

Preconcentración y atomización con tubo en la llama para la determinación de Cadmio en agua de mar

A flow injection on-line pre-concentration system coupled to thermospray flame furnace atomic absorption spectrometry (TS-FF-AAS) for cadmium determination at sub μg L-1 levels in seawater samples was developed. The on-line system was evaluated by analysing cadmium containing in a synthetic seawater matrix (2.5% m/v NaCl, 0.5% m/v MgCl2 and 0.8% m/v CaCl2). A sample volume of 2 mL allows determining Cd with a detection limits of 30 ng L-1 (3* σblank/slope), pre-concentration factor of 34 and repeatability of 1,8% (calculated as RSD, N=8 and containing 200 ng L-1 of Cd ).