Restitución 3D de la topografía de la antigua ciudad de Tarraco en un entorno SIG: propuestas metodológicas y primeros resultados

Durante los últimos años el Institut Català d’Arquelogia Clàssica, el Museu d’Història de Tarragona, contando con la colaboración de la Generalitat de Catalunya, han desarrallado el proyecto Planimetría Arqueológica de Tárraco, destinado a la elaboración de una planta arqueológica global en la cual se recogieran intervenciones y noticias referentes a los hallazgos arqueológicos existentes. Este trabajo fue publicado utilizando como plataforma de trabajo un SIG construido para tal fin (Macias et al. 2007). Sin embargo, un problema de difícil solución arqueológica venía dado por las transformaciones urbanísticas de la ciudad, sufridas en su mayor parte a lo largo de los siglos XIX y XX. Éstas habían provocado la pérdida irremediable de gran parte de la elevación que acogiera la ciudad romana, cambiando substancialmente su aspecto original. Ante esta situación y como proyecto paralelo a la realización de la Planimetría Arqueológica de Tarragona se plantearon formas de cubrir este vacío. Se presenta en esta comunicación una propuesta metodológica para la reconstrucción de los grandes «vacíos topográficos » originados por la evolución urbanística de Tarragona mediante la obtención e integración en un SIG de diversos tipos de información documental. En estas zonas rebajadas no resulta posible la obtención de información estratigráfica y arqueológica, por lo que es imprescindible la definición de vías metodológicas alternativas basadas en la extrapolación de datos extraídos de la cartografía histórica, panorámicas del XVI o fotografías tomadas en los siglos XIX y XX. Esta técnica permite aplicar los resultados obtenidos en los nuevos análisis interpretativos, complementando así la interpretación arqueológica de la topografía urbana de la ciudad romana. A partir de esta información, y aplicando funciones y técnicas de interpolación propias de un GIS, se propone aquí un modelo de relieve de la ciudad de Tarraco.

Quantitative modelling of transcription factor binding sites

Abstract One of the most important issues in molecular biology is to understand regulatory mechanisms that control gene expression. Gene expression is often regulated by proteins, called transcription factors which bind to short (5 to 20 base pairs),degenerate segments of DNA. Experimental efforts towards understanding the sequence specificity of transcription factors is laborious and expensive, but can be substantially accelerated with the use of computational predictions. This thesis describes the use of algorithms and resources for transcriptionfactor binding site analysis in addressing quantitative modelling, where probabilitic models are built to represent binding properties of a transcription factor and can be used to find new functional binding sites in genomes. Initially, an open-access database(HTPSELEX) was created, holding high quality binding sequences for two eukaryotic families of transcription factors namely CTF/NF1 and LEFT/TCF. The binding sequences were elucidated using a recently described experimental procedure called HTP-SELEX, that allows generation of large number (> 1000) of binding sites using mass sequencing technology. For each HTP-SELEX experiments we also provide accurate primary experimental information about the protein material used, details of the wet lab protocol, an archive of sequencing trace files, and assembled clone sequences of binding sequences. The database also offers reasonably large SELEX libraries obtained with conventional low-throughput protocols.The database is available at http://wwwisrec.isb-sib.ch/htpselex/ and and ftp://ftp.isrec.isb-sib.ch/pub/databases/htpselex. The Expectation-Maximisation(EM) algorithm is one the frequently used methods to estimate probabilistic models to represent the sequence specificity of transcription factors. We present computer simulations in order to estimate the precision of EM estimated models as a function of data set parameters(like length of initial sequences, number of initial sequences, percentage of nonbinding sequences). We observed a remarkable robustness of the EM algorithm with regard to length of training sequences and the degree of contamination. The HTPSELEX database and the benchmarked results of the EM algorithm formed part of the foundation for the subsequent project, where a statistical framework called hidden Markov model has been developed to represent sequence specificity of the transcription factors CTF/NF1 and LEF1/TCF using the HTP-SELEX experiment data. The hidden Markov model framework is capable of both predicting and classifying CTF/NF1 and LEF1/TCF binding sites. A covariance analysis of the binding sites revealed non-independent base preferences at different nucleotide positions, providing insight into the binding mechanism. We next tested the LEF1/TCF model by computing binding scores for a set of LEF1/TCF binding sequences for which relative affinities were determined experimentally using non-linear regression. The predicted and experimentally determined binding affinities were in good correlation.

Laatudokumentoinnin kehittäminen selluteollisuuden koneiden ja painelaitteiden valmistuksessa

Diplomityön tavoitteena oli tuoda esiin ratkaisu dokumenttien hallintaan liittyviinongelmiin valmistavassa tuotannossa. Dokumentaation hallinnan perusongelmia valmistuksessa, johon liittyy lakien ja direktiivien asettamia asetuksia sekä vaatimuksia, on mm. paperisten ja sähköisten dokumenttien käytettävyys. Paperiversioiden allekirjoittaminen ja aitouden varmistaminen on helppoa, mutta sähköisen dokumentin allekirjoittaminen ja todentaminen on vielä kehityksen alla. Pitkäaikaisarkistointi sähköisen dokumentin osalta on myös vaativaa, koska pisimmät säilytysajat voivat olla 30 vuotta ja tietotekniikan kehitys tekee huimia harppauksia tässä ajassa. Tutkimusmenetelminä käytettiin kvalitatiivista ja kirjallisuustutkimusta selvittämään dokumentoinnin nykytilaa Savonlinna Works Oy:ssä ja muualla sekä kirjallisuudessa esitettyjä menetelmiä dokumentoinnin kehittämiseen. Työn tuloksena on esitetty dokumenttien hallinnan periaatteet yleisesti ja tuotteiden dokumentointiin liittyvät muutokset, jotka pohjautuvat tutkimustuloksiin. Lisäksi on esitelty kolme järjestelmävaihtoehtoa dokumenttien hallintaan, joiden ominaisuuksia on vertailu keskenään ja pohdittu käytettävyyttä Savonlinna Works Oy:n organisaatiossa.

Des cheminements sur la voie royale : une analyse sociologique des parcours de vie des normaliens-ne-s de Saint-Cloud, Fontenay-aux-Roses et Lyon (1981-1987)

Cette thèse est consacrée à l'analyse des parcours de vie d'un groupe d'anciens et anciennes élèves d'un établissement scolaire d'élite français (les Ecoles normales supérieures de Fontenay-aux-roses, Saint-Cloud et Lyon - promotions 1981-1987). A partir d'une approche longitudinale, son but est de montrer comment l'articulation entre la socialisation familiale, scolaire, professionnelle et conjugale participe à l'orientation progressive des parcours de vie des normalien-ne-s. Elle vise ainsi à remettre en question l'idée, largement répandue, selon laquelle l'intégration d'un cursus scolaire aussi sélectif et prestigieux que celui des ENS garantirait à Lou.te.s les élèves les mêmes chances d'accès aux positions dominantes de l'espace social. Alliant l'analyse de trois types de données (archives, questionnaires, entretiens), cette thèse met en évidence la manière dont inégalités relatives à l'origine sociale et au sexe se recomposent, une fois les portes de l'institution franchies. Elle montre que, dans un contexte socio-historique marqué par une forte expansion scolaire, il est plus que jamais nécessaire d'opérer une articulation systématique entre l'analyse des conditions sociales de réussite scolaire et l'analyse des conditions sociales d'exploitation des titres scolaires, afin de rendre compte des processus complexes de reproduction des inégalités et d'esquisser certaines de leur conditions de dépassement. Abstract: This thesis is dedicated to the life course analysis of alumni from one of the most prestigious French Grandes écoles (the Ecoles Normales Supérieures of Fontenay-aux- roses, Saint-Cloud and Lyon - classes of 1981.-1987). Through a longitudinal perspective, it aims to analyze how family, educational, professional and conjugal socialization processes combine to shape the life course of this particular group of graduates. The main goal of this research is to question the widespread belief that the French Grandes Ecoles guarantee automatic access to the very top of the professional and social hierarchy for all of their graduates. Based on a mixed methods research design (archive data, a questionnaire survey and semi-structured interviews), this thesis shows that, according to social origin and gender, ENS graduates actually adopt a diverse range of professional careers. It show how, in a socio-historical context characterized by a general increase in educational levels, any analysis of social inequalities should combine two levels of analysis: the social conditions of access to educational credentials, on the one hand, and the labor market value of formal qualifications, on the other hand. Our results suggest that the combined analysis of these two processes provide useful insight into the increasingly complex processes of social reproduction - and suggest fruitful perspectives for reducing some sources of inequality.

The Application of 3D Reconstruction Techniques in the Analysis of Ancient Tarraco’s Urban Topography

The widespread implementation of GIS-based 3D topographical models has been a great aid in the development and testing of archaeological hypotheses. In this paper, a topographical reconstruction of the ancient city of Tarraco, the Roman capital of the Tarraconensis province, is presented. This model is based on topographical data obtained through archaeological excavations, old photographic documentation, georeferenced archive maps depicting the pre-modern city topography, modern detailed topographical maps and differential GPS measurements. The addition of the Roman urban architectural features to the model offers the possibility to test hypotheses concerning the ideological background manifested in the city shape. This is accomplished mainly through the use of 3D views from the main city accesses. These techniques ultimately demonstrate the ‘theatre-shaped’ layout of the city (to quote Vitrubius) as well as its southwest oriented architecture, whose monumental character was conceived to present a striking aspect to visitors, particularly those arriving from the sea.

Cycle: White under Black. Works from the imperceptible / 3. Freya Powell: I’ll smile and I’m not sad, and other past presents

The video installations of Freya Powell's first exhibition in Barcelona call for an analysis of the links between memory and the archive, between compilation, registration, and the traces of History. Powell's work establishes a fine link between the memory of those sentenced to death in the United States, the memory of the Second World War, the artist's own memory, and the different world maps produced by colonial history. This link forces us to take into account our own connection not only with the voices and words that have been archived, but also with those voices that we want to hear and register.

La documentació personal com a eina docent: ensenyar i aprendre amb els fons personals

L"objectiu de la contribució que presentem és força senzill d"entendre: hem volgut donar forma a una activitat viscuda per recordar-la i per aprofitar-la quan l"haguem de menester. Com ho hem fet?, doncs materialitzant uns fets, uns pensaments i unes idees en forma de document, el qual a hores d"ara ja forma part del nostre fons personal. La finalitat del document, però, va més enllà: volem donar a conèixer la vàlua dels fons personals com a recurs estratègic per a l"aprenentatge de l"Arxivística. Hem volgut compartir la nostra experiència en aquest canal de comunicació professional perquè pensem, modestament, que treballs com aquest poden ser noves formes d"avançar en el progrés teòric de l"Arxivística.

Omistajuus asiakasomisteisissa osuuskunnissa

Asiakasomisteiset osuuskunnat ovat menestyneet Suomessa erittäin hyvin. Niiden ymmärtäminen yritysmuotona on kuitenkin toistaiseksi perustunut lähinnä muilla kuin liiketaloustieteen oppialoilla tehdyille tutkimuksille. Johtaminen ja organisaatiot -oppialalla asiakasomisteista osuustoimintaa on tutkittu erittäin vähän. Tämä väitöskirja pyrkii vastaamaan osuustoiminnan liiketaloustieteellisen tutkimuksen kehittämisen haasteeseen keskittymällä omistajuuteen, yritystoiminnan erityispiirteiden ytimeen. Tutkimus osallistuu osuustoiminnallisesta omistajuudesta Suomessa käytävään akateemiseen keskusteluun esittelemällä viitekehyksen asiakasomisteisen osuuskunnan omistajuuden tulkitsemiseen. Tutkimuksessa pyritään ymmärtämään asiakasomistajuuden ulottuvuuksia, kuten ne rakentuvat osuustoiminnan asiantuntijoiden puheenvuoroissa. Asiakasomistajuutta ei siis analysoida "rivijäsenten" näkökulmasta, vaan tulkinta rajoittuu OP-ryhmän osuuspankkien ja S-ryhmän osuuskauppojen johtajien ja hallintohenkilöiden sekä tutkijoidentutkimusaineistossa esittämiin selontekoihin. Aineisto koostuu kaikkiaan kolmestakymmenestäviidestä haastattelusta sekä dokumenttiaineistosta. Tulkittavia tekstejä lähestytään siten, että niiden ajatellaan ylläpitävän ja aktiivisesti rakentavan asiakasomisteisten osuuskuntien omistajuutta. Väitöskirjassa rakentuva asiakasomistajuuden malli pitää sisällään sekä taloudellisrationaalisen että psykologisen omistajuuden niin yksittäisen asiakasomistajan kuin jäsenyhteisön näkökulmasta. Työn teoreettisena kontribuutiona on erityisesti asiakasomisteisen osuuskunnan omistajuuden psykologisen ulottuvuuden määrittely sekä sen liittäminen yhteisötasolla paikallisuuteen ja alueellisuuteen. Edellä mainittujen omistajuuden ulottuvuuksien ollessa kiinteästi sidoksissa asiakasomisteisten osuuskuntien rakenteeseen ja toimintatapaan, ne tarjoavat kehityspohjan kyseisten yritysten johtamista ja omistajaohjausta käsitteleville teorioille.

L'avaluació, tria i eliminació de fons fotogràfics digitals. Estudi de cas del fons del fotògraf Efren Montoya a l'Arxiu Històric de Sabadell

Durant la última dècada hem viscut l’explosió de la fotografia digital. Les possibilitats de captar imatges s’ha multiplicat de manera gairebé infinita sense implicar costos afegits pel fotògraf. Això ens obliga a replantejar-nos la necessitat d’establir uns criteris ben definits per avaluar, triar i eliminar les fotografies que ingressen als nostres arxius. El treball que es presenta aquí té com a objectiu establir uns protocols per tal de poder aplicar aquests procediments al nous fons que passin a formar part del nostre patrimoni documental. Finalment, s’ha dut a terme l’experiència d’entregar al productor d’un fons part de la seva documentació per tal que ell l’avalués i després comparar els resultats amb l’avaluació duta a terme des de l’arxiu. Paraules clau: avaluació, tria, eliminació, fotografia born-digital, ingrés, metadades, arxiu digital, formats de preservació

Notarios catalanes en Roma: los notarios matriculados en el Archivo de la Curia (1508-1671)

[spa]Este artículo estudia la presencia en Roma de un colectivo de notarios catalanes durante los siglos XVI y XVII. Se trata de los notarios matriculados en el colegio de escritores del archivo de la curia, una institución que tenía la función de crear notarios. Todo notario extranjero que llegaba a Roma tenía que matricularse en este colegio. En los libros de matrícula se insertan diversos datos de cada uno de los notarios, además del signum. Se plantea también la hipótesis de que estos notarios trabajen en Roma ejerciendo el oficio notarial. Por ello se analiza la actividad de algunos de estos notarios en la ciudad de Roma a través de la documentación notarial conservada actualmente en los archivos romanos.

La documentació personal com a eina docent: ensenyar i aprendre amb els fons personals

L"objectiu de la contribució que presentem és força senzill d"entendre: hem volgut donar forma a una activitat viscuda per recordar-la i per aprofitar-la quan l"haguem de menester. Com ho hem fet?, doncs materialitzant uns fets, uns pensaments i unes idees en forma de document, el qual a hores d"ara ja forma part del nostre fons personal. La finalitat del document, però, va més enllà: volem donar a conèixer la vàlua dels fons personals com a recurs estratègic per a l"aprenentatge de l"Arxivística. Hem volgut compartir la nostra experiència en aquest canal de comunicació professional perquè pensem, modestament, que treballs com aquest poden ser noves formes d"avançar en el progrés teòric de l"Arxivística.

Refractory subretinal fluid in patients with neovascular age-related macular degeneration treated with intravitreal ranibizumab: visual acuity outcome.

PURPOSE: To investigate the functional outcome of eyes with neovascular AMD (nAMD) and subretinal fluid (SRF) refractory to treatment with ranibizumab. METHODS: Retrospective chart review of consecutive treatment-refractory SRF in nAMD despite monthly ranibizumab injections during 12 months or more. Data were evaluated for baseline characteristics, location of the refractory SRF, mean visual acuity (VA) change, number of injections, and timepoint of first complete disappearance of SRF. RESULTS: Forty-five eyes in 44 patients (mean age of 76 years) were included. The mean follow-up was 32.4 months (range 12-73 months). The mean number of injections was 11.6 in the first year and 27.5 over follow-up. The refractory SRF was located subfoveally in 66.7 %. In 12 eyes (26.7 %), complete absorption of SRF was found after a mean of 22.6 months (range, 13-41 months). Mean VA increased by 10.4, 8.2, and 8.6 letters by month 12, 24, and 36, respectively. CONCLUSIONS: Neovascular AMD with SRF refractory to monthly retreatment with ranibizumab may still allow good and maintained visual improvement, even if the fluid is located subfoveally. SRF may progressively absorb under continuous monthly treatment. The necessity to treat refractory SRF with monthly injections could be questioned and would need future investigations.

Ocular adnexal (orbital) solitary fibrous tumor: nuclear STAT6 expression and literature review.

PURPOSE: To report the clinico-pathological features of solitary fibrous tumor occurring in the ocular adnexa (OA) in a single center. To assess the presence of NAB2-STAT6 genes fusion in OA solitary fibrous tumor detected by nuclear overexpression of STAT6. METHODS: Retrospective study including orbital and OA solitary fibrous tumors treated between 2006 and 2014 in our center. The clinical, radiological, and histopathological findings were evaluated. STAT6 expression was assessed by immunohistochemistry. RESULTS: Five patients were identified and presented with a chronic OA mass. The tumors were radiologically well delimited, highly vascularized and without bone erosion. All the patients underwent complete surgical excision. Pathological examination confirmed solitary fibrous tumor in all cases. All tumors demonstrated a nuclear expression of STAT6. There were no recurrences, with a mean follow-up of 5 years after surgery. Our review demonstrated that proptosis was the most common presentation occurring in 60 % of the cases. In the ocular adnexa, adverse histological criteria were found in 19.7 % of the tumors, and recurrences were observed in 48 % of these cases. Thirty-six percent of patients presented at least one local recurrence, and metastastic spread was found in 2.4 % of the cases. Tumor-related death was described in two cases. CONCLUSION: Ocular adnexal SFT are rare and usually present as a chronic orbital mass with proptosis. In the OA, solitary fibrous tumor demonstrates STAT6 nuclear expression, as documented in other locations. Recurrences are unusual and metastasis exceptional. Initial surgical resection should be complete in order to avoid recurrence.

Addition of MR imaging features and genetic biomarkers strengthens glioblastoma survival prediction in TCGA patients.

PURPOSE: The purpose of our study was to assess whether a model combining clinical factors, MR imaging features, and genomics would better predict overall survival of patients with glioblastoma (GBM) than either individual data type. METHODS: The study was conducted leveraging The Cancer Genome Atlas (TCGA) effort supported by the National Institutes of Health. Six neuroradiologists reviewed MRI images from The Cancer Imaging Archive (http://cancerimagingarchive.net) of 102 GBM patients using the VASARI scoring system. The patients' clinical and genetic data were obtained from the TCGA website (http://www.cancergenome.nih.gov/). Patient outcome was measured in terms of overall survival time. The association between different categories of biomarkers and survival was evaluated using Cox analysis. RESULTS: The features that were significantly associated with survival were: (1) clinical factors: chemotherapy; (2) imaging: proportion of tumor contrast enhancement on MRI; and (3) genomics: HRAS copy number variation. The combination of these three biomarkers resulted in an incremental increase in the strength of prediction of survival, with the model that included clinical, imaging, and genetic variables having the highest predictive accuracy (area under the curve 0.679±0.068, Akaike's information criterion 566.7, P<0.001). CONCLUSION: A combination of clinical factors, imaging features, and HRAS copy number variation best predicts survival of patients with GBM.