Normas DRIS regionais e inter-regionais na avaliação nutricional de café Conilon

O objetivo deste trabalho foi avaliar o desempenho de normas de sistema integrado de diagnose e recomendação (DRIS) regionais e inter-regionais no diagnóstico nutricional de café Conilon (Coffea canephora). Dados foliares de N, P, K, Ca e Mg, referentes a 268 lavouras cafeeiras do Espírito Santo e de Rondônia, foram utilizados para a definição de quatro conjuntos de normas DRIS: três para condições específicas (normas regionais) e um para todas as condições testadas (normas inter-regionais). As lavouras apresentavam grandes diferenças quanto ao manejo e às condições ambientais. Após o estabelecimento das normas, os diagnósticos nutricionais obtidos a partir delas foram confrontados entre si. Todas as normas foram efetivas em proporcionar diagnósticos que distinguissem padrões nutricionais das lavouras, tanto no Espirito Santo como em Rondônia. Na norma DRIS inter-regional, as médias e os desvios-padrão das relações multivariadas entre os nutrientes apresentaram valores intermediários, em comparação aos obtidos nos conjuntos de normas regionais. Não foi constatada aleatoriedade no diagnóstico nutricional com uso das normas inter-regionais, o qual apresentou elevado grau de concordância com o das normas regionais. Normas específicas somente devem ser utilizadas nas condições em que foram geradas, enquanto normas genéricas apresentam aplicabilidade mais ampla sem prejuízo à acurácia dos diagnósticos.

Diagnostic interview for genetic studies (DIGS): inter-rater and test-retest reliability of alcohol and drug diagnoses

The semi-structured diagnostic interview for genetic studies (DIGS) was developed to assess major mood and psychotic disorders and their spectrum manifestations in genetic studies. Our research group developed a French version of the DIGS and tested its inter-rater and test-retest reliability in psychiatric patients. In this article, we present estimates of the reliability of substance use and antisocial personality disorders. High kappa coefficients for inter-rater reliability were found for drug and alcohol as well as antisocial personality diagnoses and slightly lower kappas for test-retest reliability. Combined with evidence of the reliability of major mood and psychotic disorders, these findings support the suitability of the DIGS for studies of familial aggregation and comorbidity of psychiatric disorders including substance use and antisocial personality disorders.

Multidisciplinary practice vs. inter-firm collaboration in professional services market

Yritysten välinen yhteistyö kasvaa asiantuntijamarkkinoilla. Suppean palvelutarjooman omaavat yritykset muodostavat laajempia palveluita yhdistämällä osaamisiaan kumppaneidensa kanssa. Näin muodostuvat yritysryhmittymät uhkaavat alaa hallitsevia monipuolisen palvelutarjooman omaavia kansainvälisiä moniosaajayrityksiä. Tämän diplomityön tavoitteena on selvittää minkälaisia hyötyjä moniosaajayritys voi saada näitä ryhmittymiä vastaan lisäämällä omaa yhteistyötään. Tavoitteeseen pääsemiseksi markkinoilla olevat yritysryhmittymät tunnistetaan ja selvitetään minkälaisia asioita asiakas pitää tärkeänä ostaessaan asiantuntijapalveluita. Toimialan trendit ja aikaisemmat tutkimukset yritysten välisestä yhteistyöstä sekä asiakkaan ostokäyttäytymisestä osoittavat, että yhteistyön avulla yrityksellä on mahdollisuus saavuttaa monia hyötyjä. Tietoa olemassa olevista yritysryhmittymistä ja asiakkaiden ostokäyttäytymisestä kerättiin haastattelemalla yhden kansainvälisen moniosaajayrityksen henkilöstöä sekä asiakkaita. Tuloksena löytyi yritysryhmittymiä, joista osa uhkaa moniosaajayrityksen kilpailuetua. Asiakkaiden ostokäyttäyminen suosi hieman enemmän asiantuntijapalveluiden hankkimista yritysryhmittymältä moniosaajayrityksen sijaan. Tekemällä yhteistyötä ja tarjoamalla tiettyjä palveluita yhdessä kumppanin kanssa, moniosaajayritys voi saavuttaa hyötyjä yritysryhmittymiä vastaan ja vaikuttaa positiivisesti asiakkaan ostokäyttäytymiseen.

Inter-limb coordination and energy cost in swimming.

OBJECTIVES: This study investigated the relationship between inter-arm coordination and the energy cost of locomotion in front crawl and breaststroke and explored swimmers' flexibility in adapting their motor organization away from their preferred movement pattern. DESIGN: Nine front-crawlers performed three 300-m in front crawl and 8 breaststrokers performed three 200-m in breaststroke at constant submaximal intensity and with 5-min rests. Each trial was performed randomly in a different coordination pattern: freely chosen, 'maximal glide' and 'minimal glide'. Two underwater cameras videotaped frontal and side views to analyze speed, stroke rate, stroke length and inter-limb coordination. METHODS: In front crawl, inter-arm coordination was quantified by the index of coordination (IdC) and the leg beat kicks were counted. In breaststroke, four time gaps quantified the arm to leg coordination (i.e., time between leg and arm propulsions; time between beginning, 90° flexion and end of arm and leg recoveries). The energy cost of locomotion was calculated from gas exchanges and blood lactate concentration. RESULTS: In both front crawl and breaststroke, the freely chosen coordination corresponded to glide pattern and showed the lowest energy cost (12.8 and 17.1Jkg(-1)m(-1), respectively). Both front-crawlers and breaststrokers were able to reach 'maximal glide' condition (respectively, +35% and +28%) but not 'minimal glide' condition for front crawl. CONCLUSIONS: The freely chosen pattern appeared more economic because more trained. When coordination was constrained, the swimmers had higher coordination flexibility in breaststroke than in front crawl, suggesting that breaststroke coordination was easier to regulate by changing glide time.

Projets de coopération universitaire : l'émergence de nouvelles structures de gouvernance

Depuis le début des années quatre-vingt-dix, le modèle classique de l'université est fortement remis en question: pénétration accrue des acteurs privés, attentes de la société civile, contractualisation et «horizontalisation» des relations, etc. L'université bouge et doit s'adapter à un environnement en mutation. En Suisse, les projets de coopération inter universités semblent être une des réponses privilégiées par les acteurs dominants du système pour faire face à ces changements. Toutefois, la mise en place de nouveaux arrangements institutionnels notamment sous la forme de réseaux d'enseignement et de recherche ne va pas sans soulever de nombreuses interrogations. Premièrement, et notamment du fait de bases légales peu développées, les collaborations institutionnalisées n'ont pas toutes la même configuration. Nous devons donc nous questionner sur les formes concrètes prises par ces réseaux d'enseignement et de recherche et sur les raisons qui ont conduit à l'adoption d'un type particulier de structure de coopération. Ensuite, comme ces structures ne viennent pas remplacer, mais plutôt se superposer à celles préexistantes, il convient de comprendre la redistribution du pouvoir au sein de formes institutionnelles complexes. Plus précisément, l'analyse de la nouvelle répartition des compétences entre les institutions hiérarchiques (les universités) et les coopérations (réseaux) en particulier sous l'angle de l'autonomie dont ces dernières disposent, se révèle être un angle d'approche fructueux. Finalement, la question de l'évaluation de ces nouvelles formes de gouvernance va se poser. Outre les formes prises par ces structures, une discussion doit être menée autour des limites démocratiques de cette nouvelle forme du secteur public. Ce working paper présente dans un premier temps quelques facteurs qui ont contraints les universités à une remise en cause de leurs structures de gouvernance. Il introduit ensuite quelques éléments théoriques faisant référence aux théories portant sur les réseaux et plus particulièrement à l'approche institutionnelle de ceux-ci. La troisième partie de ce papier présente brièvement les structures de gouvernance du système universitaire helvétique ainsi que les récentes pressions au changement ayant favorisé la mise en place de ces réseaux. Finalement, la quatrième partie étudie, au travers de six cas de coopérations inter-universitaires suisses, la forme prise par ces réseaux, essentiellement sous l'angle de leur degré d'autonomie.

Blind docking of 260 protein-ligand complexes with EADock 2.0.

Molecular docking softwares are one of the important tools of modern drug development pipelines. The promising achievements of the last 10 years emphasize the need for further improvement, as reflected by several recent publications (Leach et al., J Med Chem 2006, 49, 5851; Warren et al., J Med Chem 2006, 49, 5912). Our initial approach, EADock, showed a good performance in reproducing the experimental binding modes for a set of 37 different ligand-protein complexes (Grosdidier et al., Proteins 2007, 67, 1010). This article presents recent improvements regarding the scoring and sampling aspects over the initial implementation, as well as a new seeding procedure based on the detection of cavities, opening the door to blind docking with EADock. These enhancements were validated on 260 complexes taken from the high quality Ligand Protein Database [LPDB, (Roche et al., J Med Chem 2001, 44, 3592)]. Two issues were identified: first, the quality of the initial structures cannot be assumed and a manual inspection and/or a search in the literature are likely to be required to achieve the best performance. Second the description of interactions involving metal ions still has to be improved. Nonetheless, a remarkable success rate of 65% was achieved for a large scale blind docking assay, when considering only the top ranked binding mode and a success threshold of 2 A RMSD to the crystal structure. When looking at the five-top ranked binding modes, the success rate increases up to 76%. In a standard local docking assay, success rates of 75 and 83% were obtained, considering only the top ranked binding mode, or the five top binding modes, respectively.

[Magnificentiores selectioresque Urbis Venetiarum prospectus quos olim Michael Marieschi, Venetus pictor et architectus in plerisque tabulis depinxit, nunc vero ab ipsomet acurate delineante, incidente, tyspisque mandante, iterum in sexdecim aereis tabulis in lucem aeduntur]. [3], Foscarorum ades ad levam, et e conspectu altera Balborum ambo praeter canalem magnum ; ubi etiam solemne nauticum certamen, et maxima prequentia cymbarum vel auro vel argento vel alio ornatu obductarum, fictasque formas exhibentium cernuntur, nec non lintres naviculariorum pro brabrio certantium. Inter easdem aedes exornata ad maiorem spectaculi dignitatm meta super acquas erigitur. : [estampe] / Mich.l Marieschi del.t et inci.t

Référence bibliographique : Toledano, Marieschi, 35d

Relation between sequence and structure of HIV-1 protease inhibitor complexes: a model system for the analysis of protein flexibility.

The flexibility of different regions of HIV-1 protease was examined by using a database consisting of 73 X-ray structures that differ in terms of sequence, ligands or both. The root-mean-square differences of the backbone for the set of structures were shown to have the same variation with residue number as those obtained from molecular dynamics simulations, normal mode analyses and X-ray B-factors. This supports the idea that observed structural changes provide a measure of the inherent flexibility of the protein, although specific interactions between the protease and the ligand play a secondary role. The results suggest that the potential energy surface of the HIV-1 protease is characterized by many local minima with small energetic differences, some of which are sampled by the different X-ray structures of the HIV-1 protease complexes. Interdomain correlated motions were calculated from the structural fluctuations and the results were also in agreement with molecular dynamics simulations and normal mode analyses. Implications of the results for the drug-resistance engendered by mutations are discussed briefly.

Reliability of the density functional approximation to describe the charge transfer and electrostatic complexes involved in the modeling of organic conducting polymers

Both the intermolecular interaction energies and the geometries for M ̄ thiophene, M ̄ pyrrole, M n+ ̄ thiophene, and M n+ ̄ pyrrole ͑with M = Li, Na, K, Ca, and Mg; and M n+ = Li+ , Na+ , K+ , Ca2+, and Mg2+͒ have been estimated using four commonly used density functional theory ͑DFT͒ methods: B3LYP, B3PW91, PBE, and MPW1PW91. Results have been compared to those provided by HF, MP2, and MP4 conventional ab initio methods. The PBE and MPW1PW91 are the only DFT methods able to provide a reasonable description of the M ̄ complexes. Regarding M n+ ̄ ␲ complexes, the four DFT methods have been proven to be adequate in the prediction of these electrostatically stabilized systems, even though they tend to overestimate the interaction energies.

Inter-relações genéticas entre espécies do gênero Spondias com base em marcadores AFLP

O objetivo deste trabalho foi construir um fenograma de trinta indivíduos de seis espécies de Spondias, amostradas em três diferentes locais, baseado em 120 marcadores AFLP das combinações de primers EcoR1/Mse1 para esclarecer as inter-relações entre as espécies, subsidiar a exploração das espécies como porta-enxerto e fornecer informações genômicas dessas espécies. O fenograma UPGMA do coeficiente de Jaccard apresentou boa definição, com valor co-fenético de 0,925 e localização externa de dois "outgroups" das espécies Mangifera indica e Schinopsis brasiliensis da família Anacardeaceae. Todos os indivíduos de S. cytherea, S. tuberosa e S. purpurea foram agrupados dentro de cada espécie, independentemente do local de amostragem, enquanto quatro dos seis indivíduos de Spondias sp (umbu-cajá) e S. mombin foram agrupadas, e outros dois indivíduos foram posicionados fora dos agrupamentos dessas espécies. Os dois indivíduos de Spondias sp (umbuguela) não se posicionaram próximos no fenograma. A posição do umbu-cajá e da umbuguela (PE) entre umbuzeiro e cajazeira, e similaridades entre 50% e 60% sugerem que as mesmas possam ser híbridas entre as duas espécies. O fenograma sugeriu que S. cytherea foi a espécie mais divergente das estudadas.